2013 Publications

Amie, S. M., E. Noble, and B. Kim. 2013. Intracellular nucleotide levels and the control of retroviral infections. Virology 436:247-254.
Bellaousov, S., J. S. Reuter, M. G. Seetin, and D. H. Mathews. 2013. RNAstructure: web servers for RNA secondary structure prediction and analysis. Nucleic acids research.
Butts, A., L. DiDone, K. Koselny, B. K. Baxter, Y. Chabrier-Rosello, M. Wellington, and D. J. Krysan. 2013. A repurposing approach identifies off-patent drugs with fungicidal cryptococcal activity, a common structural chemotype, and pharmacological properties relevant to the treatment of cryptococcosis. Eukaryotic cell 12:278-287. .
Daddacha, W., E. Noble, L. A. Nguyen, E. M. Kennedy, and B. Kim. 2013. Effect of Ribonucleotides Embedded in a DNA Template on HIV-1 Reverse Transcription Kinetics and Fidelity. The Journal of biological chemistry 288:12522-12532.

Davidson, D. C., G. Schifitto, and S. B. Maggirwar. 2013. Valproic acid inhibits the release of soluble CD40L induced by non-nucleoside reverse transcriptase inhibitors in human immunodeficiency virus infected individuals. PloS one 8:e59950.
Dragin, L., L. A. Nguyen, H. Lahouassa, A. Sourisce, B. Kim, B. C. Ramirez, and F. Margottin-Goguet. 2013. Interferon block to HIV-1 transduction in macrophages despite SAMHD1 degradation and high deoxynucleoside triphosphates supply. Retrovirology 10:30.
Easterhoff, D., F. Ontiveros, L. R. Brooks, Y. Kim, B. Ross, J. N. Silva, J. S. Olsen, C. Feng, D. J. Hardy, P. M. Dunman, and S. Dewhurst. 2013. Semen-Derived Enhancer of Viral Infection (SEVI) Binds Bacteria, Enhances Bacterial Phagocytosis by Macrophages, and Can Protect against Vaginal Infection by a Sexually Transmitted Bacterial Pathogen. Antimicrobial agents and chemotherapy 57:2443-2450.
Goujon, C., T. Schaller, R. P. Galao, S. M. Amie, B. Kim, K. Olivieri, S. J. Neil, and M. H. Malim. 2013. Evidence for IFNalpha-induced, SAMHD1-independent inhibitors of early HIV-1 infection. Retrovirology 10:23.
Gramberg, T., T. Kahle, N. Bloch, S. Wittmann, E. Mullers, W. Daddacha, H. Hofmann, B. Kim, D. Lindemann, and N. R. Landau. 2013. Restriction of diverse retroviruses by SAMHD1. Retrovirology 10:26.
Jones, M. C., J. J. Kobie, and L. A. Delouise. 2013. Characterization of cell seeding and specific capture of B cells in microbubble well arrays. Biomedical microdevices.
Lu, N., J. Silva, Y. Gu, S. Gerber, H. Wu, H. Gelbard, S. Dewhurst, and H. Miao. 2013. Directional Histogram Ratio at Random Probes: A Local Thresholding Criterion for Capillary Images. Pattern recognition 46:1933-1948.
Luque, A. E., R. Corales, R. J. Fowler, J. Dimarco, A. van Keken, P. Winters, M. C. Keefer, and K. Fiscella. 2013. Bridging the Digital Divide in HIV Care: A Pilot Study of an iPod Personal Health Record. Journal of the International Association of Providers of AIDS Care 12:117-121.
McMahon, J. M., S. Tortu, E. R. Pouget, L. Torres, W. Rodriguez, and R. Hamid. 2013. Effectiveness of Couple-Based HIV Counseling and Testing for Women Substance Users and Their Primary Male Partners: A Randomized Trial. Advances in preventive medicine 2013:286207.
Pal, S., A. R. Yadav, M. A. Lifson, J. E. Baker, P. M. Fauchet, and B. L. Miller. 2013. Selective virus detection in complex sample matrices with photonic crystal optical cavities. Biosensors & bioelectronics 44:229-234. .
Sullivan, M. A., L. R. Brooks, P. Weidenborner, W. Domm, J. Mattiacio, Q. Xu, M. Tiberio, T. Wentworth, J. Kobie, P. Bryk, B. Zheng, M. Murphy, I. Sanz, and S. Dewhurst. 2013. Anti-Idiotypic Monobodies Derived from a Fibronectin Scaffold. Biochemistry.
Wang, J., D. Li, R. A. Bambara, H. Yang, and C. Dykes. 2013. L74V increases the reverse transcriptase content of HIV-1 virions with non-nucleoside reverse transcriptase drug-resistant mutations L100I+K103N and K101E+G190S, which results in increased fitness. The Journal of general virology.
White, T. E., A. Brandariz-Nunez, J. C. Valle-Casuso, S. Amie, L. Nguyen, B. Kim, J. Brojatsch, and F. Diaz-Griffero. 2013. Contribution of SAM and HD domains to retroviral restriction mediated by human SAMHD1. Virology 436:81-90.
White, T. E., A. Brandariz-Nunez, J. C. Valle-Casuso, S. Amie, L. A. Nguyen, B. Kim, M. Tuzova, and F. Diaz-Griffero. 2013. The Retroviral Restriction Ability of SAMHD1, but Not Its Deoxynucleotide Triphosphohydrolase Activity, Is Regulated by Phosphorylation. Cell host & microbe 13:441-451.
Xiao, Y., H. Miao, S. Tang, and H. Wu. 2013. Modeling antiretroviral drug responses for HIV-1 infected patients using differential equation models. Advanced drug delivery reviews.

Recent Events

2013 World AIDS Day

In honor of World AIDS Day the CFAR hosted a scientific symposium featuring talks from prestigious experts in the AIDS community and research posters from students and post doctoral associates training at the UR.

Congratulations to this year's poster award recipients!
*David Griffith, Departments of Internal Medicine/Pediatrics and Emergency Medicine
*Meera Singh, Department of Microbiology and Immunology
*John DiMaio, Department of Chemistry
*Katherine Thomas, Department of Psychiatry
*Christopher Nishimura, Department of Microbiology and Immunology