SNPs in the Human CArGome

Gene Name	Conserved CArG	Conserved CArG Coordinates	CArG Location	SNP	Position	UCSC Genome Browser Views
CYR61^a	CCTTTTA(T/C)AG	Chr1: 85822918 - 85822927	3' INTERGENIC	rs10158350	8	Zoom out	Zoom in
CYR61	CTTTTA(T/C)AGG	Chr1: 85822919 - 85822928	3' INTERGENIC	rs10158350	7	Zoom out	Zoom in
EPHA4	C(C/A)AAATTAGA	Chr2: 222141375 - 222141384	INTRONIC	rs10175097	2	Zoom out	Zoom in
GRK6	CCCTAA(T/C)TGG	Chr5: 176786011 - 176786020	5' PROMOTER	rs3763079	7	Zoom out	Zoom in
KLF6^c	(C/A)CTTATTTGG	Chr10: 3815334 - 3815343	INTRONIC	rs10795076	1	Zoom out	Zoom in
LDB3	GCTTAAAT(G/A)G	Chr10: 88420340 - 88420349	INTRONIC	rs12570315	9	Zoom out	Zoom in
PRPF40A	CCAAAATTT(G/C)	Chr2: 153281654 - 153281663	INTRONIC	rs4664604	10	Zoom out	Zoom in

ACTB	CCTTATATGG	Chr7: 5538183 - 5538192	5' PROMOTER	rs2966449	32	Zoom out	Zoom in
ANKMY2	CCAGATTTGG	Chr7: 16654023 - 16654032	INTRONIC	rs17620110	-35	Zoom out	Zoom in
ANKRD1	CTAATTATGG	Chr10: 92671459 - 92671468	5' PROMOTER	rs3824739	4	Zoom out	Zoom in
AOC3	CCATGTAAGG	Chr17: 38256644 - 38256653	5' PROMOTER	rs33918079	-14	Zoom out	Zoom in
BTG2	CCTAAAAAGG	Chr1: 201539541 - 201539550	5' PROMOTER	rs16851268	-16	Zoom out	Zoom in
CAP1	CCATCTATGG	Chr1: 40278262 - 40278271	5' PROMOTER	rs3806203	-4	Zoom out	Zoom in
CYR61	CCATGTATGG	Chr1: 85819924 - 85819933	INTRONIC	rs9658584	-25	Zoom out	Zoom in
DMPK	CCTTTTGTGG	Chr19: 50976000 - 50976009	INTRONIC	rs2854336	32	Zoom out	Zoom in
EPHA4	CCTTTTTAGA	Chr2: 222142004 - 222142013	INTRONIC	rs6748287	-10	Zoom out	Zoom in
FEN1	CCATTTATTG	Chr11: 61316054 - 61316063	INTRONIC	rs695865	-32	Zoom out	Zoom in
FYN	CCTATAAAGA	Chr6: 112302318 - 112302327	5' PROMOTER	rs1409837	14	Zoom out	Zoom in
GADD45G^b	CTATATAAGG	Chr9: 91409717 - 91409726	5' PROMOTER	rs3138499	15	Zoom out	Zoom in
GADD45G	CTATATAAGG	Chr9: 91409717 - 91409726	5' PROMOTER	rs3138497	-1	Zoom out	Zoom in
GADD45G	CCTTTTAAGG	Chr9: 91409480 - 91409489	5' PROMOTER	rs3138495	-16	Zoom out	Zoom in
GADD45G	CTATATAAGG	Chr9: 91409717 - 91409726	5' PROMOTER	rs3138498	9	Zoom out	Zoom in
GSN	CCTAAAATGG	Chr9: 123101069 - 123101078	INTRONIC	rs3761855	7	Zoom out	Zoom in
HBEGF	CTATATTTGG	Chr5: 139704884 - 139704893	INTRONIC	rs4150202	17	Zoom out	Zoom in
HOXD11	CCAATTTAGG	Chr2: 176681284 - 176681293	INTRONIC	rs847146	35	Zoom out	Zoom in
IGF1	CCTAAACAGG	Chr12: 101401250 - 101401259	5' PROMOTER	rs12579077	34	Zoom out	Zoom in
IL17RB	CCTAATTTGG	Chr3: 53857661 - 53857670	INTRONIC	rs2232333	31	Zoom out	Zoom in
IL17RB	CCTAATTTGG	Chr3: 53857661 - 53857670	INTRONIC	rs1025690	33	Zoom out	Zoom in
IL6	CTTAATAAGG	Chr7: 22733198 - 22733207	INTRONIC	rs1800795	-28	Zoom out	Zoom in
M6PR	CCTAATTTTG	Chr12: 8991974 - 8991983	INTRONIC	rs1805758	2	Zoom out	Zoom in
MAPRE2	CCTTTTTAGA	Chr18: 30872902 - 30872911	5' PROMOTER	rs3937008	-11	Zoom out	Zoom in
MCL1	CCTTTTATGG	Chr1: 148818797 - 148818806	5' PROMOTER	rs34468496	14	Zoom out	Zoom in
PCDH18	ACTTAAAAGG	Chr4: 138674329 - 138674338	5' PROMOTER	rs11939766	4	Zoom out	Zoom in
PRM1	CCATATATGG	Chr16: 11282800 - 11282809	5' PROMOTER	rs2301365	13	Zoom out	Zoom in
RING1	CCATAAAAGA	Chr6: 33281848 - 33281857	INTRONIC	rs439205	-28	Zoom out	Zoom in
TGFBR1	CCTTAAAAGG	Chr9: 100906075 - 100906084	5' PROMOTER	rs11568742	28	Zoom out	Zoom in
TJP1	CAAATATTGG	Chr15: 27899304 - 27899313	INTRONIC	rs45563136	19	Zoom out	Zoom in
TNNT2	CCAAGAAAGG	Chr1: 199611959 - 199611968	INTRONIC	rs947485	-7	Zoom out	Zoom in
TPM2	CTATATATGG	Chr9: 35677545 - 35677554	INTRONIC	rs3793537	-2	Zoom out	Zoom in

Each row represents a SNP (dbSNP 128) mapped within (top set) or near (bottom set) a conserved CArG. Conserved CArG Coordinates are based on Ensembl (Release 53), using the H.Sa Mar 2006 (HG 18) Assembly. Wild type and SNP alleles are shown in parentheses for SNPs within the CArG box. Position is the number of base pairs from the SNP to the CArG box (Negative is upstream from transcription start site (TSS); positive is downstream). CArG Location is with respect to the target gene.
^a SNP rs10158350 was found in two conserved CArGs for gene CYR61.
^b Three unique SNPs were found near the CArG ‘CTATATAAGG’ for gene GADD45G.
^c The CArG box near gene KLF6 is a consensus CArG box.