Hongyu Miao, Ph.D.

Hongyu Miao, Ph.D.

Contact Information

University of Rochester Medical Center
School of Medicine and Dentistry
601 Elmwood Ave, Box 630
Rochester, NY 14642

Office: (585) 275-0408
Fax: (585) 273-1031

Journal Articles

Showing all 28 journal articles available.

2015 Jul
Power D, Santoso N, Dieringer M, Yu J, Huang H, Simpson S, Seth I, Miao H, Zhu J. "IFI44 suppresses HIV-1 LTR promoter activity and facilitates its latency." Virology. 2015 Jul; 481:142-50. Epub 2015 Mar 14.
2015 May 1
Wu H, Miao H, Xue H, Topham DJ, Zand M. "Quantifying Immune Response to Influenza Virus Infection via Multivariate Nonlinear ODE Models with Partially Observed State Variables and Time-Varying Parameters." Statistics in biosciences. 2015 May 1; 7(1):147-166.
2015 May
Lu N, Li T, Pan J, Ren X, Feng Z, Miao H. "Structure constrained semi-nonnegative matrix factorization for EEG-based motor imagery classification." Computers in biology and medicine. 2015 May; 60:32-9. Epub 2015 Feb 24.
2014 Oct
Miao H, Wu H, Xue H. "Generalized Ordinary Differential Equation Models." Journal of the American Statistical Association. 2014 Oct; 109(508):1672-1682.
Sanchez-Lockhart M, Rojas AV, Fettis MM, Bauserman R, Higa TR, Miao H, Waugh RE, Miller J. "T cell receptor signaling can directly enhance the avidity of CD28 ligand binding." PloS one. 2014 9(2):e89263. Epub 2014 Feb 24.
Miao H, Sangster MY, Livingstone AM, Hilchey SP, Zhang L, Topham DJ, Mosmann TR, Holden-Wiltse J, Perelson AS, Wu H, Zand MS. "Modeling the dynamics and migratory pathways of virus-specific antibody-secreting cell populations in primary influenza infection." PloS one. 2014 9(8):e104781. Epub 2014 Aug 29.
Liu ZP, Wu H, Zhu J, Miao H. "Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection." BMC bioinformatics. 2014 15:336. Epub 2014 Oct 04.
2013 Oct
Seckler JM, Leioatts N, Miao H, Grossfield A. "The interplay of structure and dynamics: insights from a survey of HIV-1 reverse transcriptase crystal structures." Proteins. 2013 Oct; 81(10):1792-801. Epub 2013 Aug 16.
2013 Jul 1
Lu N, Silva J, Gu Y, Gerber S, Wu H, Gelbard H, Dewhurst S, Miao H. "Directional Histogram Ratio at Random Probes: A Local Thresholding Criterion for Capillary Images." Pattern recognition. 2013 Jul 1; 46(7):1933-1948. Epub 2013 Jan 18.
2013 Jun 30
Xiao Y, Miao H, Tang S, Wu H. "Modeling antiretroviral drug responses for HIV-1 infected patients using differential equation models." Advanced drug delivery reviews. 2013 Jun 30; 65(7):940-53. Epub 2013 Apr 17.
Wang J, Zhang L, Jing C, Ye G, Wu H, Miao H, Wu Y, Zhou X. "Multi-scale agent-based modeling on melanoma and its related angiogenesis analysis." Theoretical biology & medical modelling. 2013 10:41. Epub 2013 Jun 21.
2012 Jun 29
Li X, Miao H, Henn A, Topham DJ, Wu H, Zand MS, Mosmann TR. "Ki-67 expression reveals strong, transient influenza specific CD4 T cell responses after adult vaccination." Vaccine. 2012 Jun 29; 30(31):4581-4. Epub 2012 Apr 30.
2012 Feb
Miao H, Jin X, Perelson AS, Wu H. "Evaluation of multitype mathematical models for CFSE-labeling experiment data." Bulletin of mathematical biology. 2012 Feb; 74(2):300-26. Epub 2011 Jun 17.
Henn AD, Laski M, Yang H, Welle S, Qiu X, Miao H, Barry CT, Wu H, Zand MS. "Functionally Distinct Subpopulations of CpG-Activated Memory B Cells." Scientific reports. 2012 2:345. Epub 2012 Mar 30.
2011 Nov 1
Wu H, Kumar A, Miao H, Holden-Wiltse J, Mosmann TR, Livingstone AM, Belz GT, Perelson AS, Zand MS, Topham DJ. "Modeling of influenza-specific CD8+ T cells during the primary response indicates that the spleen is a major source of effectors." The Journal of immunology : official journal of the American Association of Immunologists. 2011 Nov 1; 187(9):4474-82. Epub 2011 Sep 23.
2011 Jan 1
Miao H, Xia X, Perelson AS, Wu H. "ON IDENTIFIABILITY OF NONLINEAR ODE MODELS AND APPLICATIONS IN VIRAL DYNAMICS." SIAM review. Society for Industrial and Applied Mathematics. 2011 Jan 1; 53(1):3-39.
Miao, H.; Xia, X.; Perelson, A.S.; and Wu H. "On identifiability of nonlinear ODE models with applications in viral dynamics". SIAM Review. 2011; 53(1): 3-39. Link
2010 Jul
Miao H, Hollenbaugh JA, Zand MS, Holden-Wiltse J, Mosmann TR, Perelson AS, Wu H, Topham DJ. "Quantifying the early immune response and adaptive immune response kinetics in mice infected with influenza A virus." Journal of virology. 2010 Jul; 84(13):6687-98. Epub 2010 Apr 21.
2010 Mar 1
2010 Jan 1
Xue H, Miao H, Wu H. "Sieve Estimation of Constant and Time-Varying Coefficients in Nonlinear Ordinary Differential Equation Models by Considering Both Numerical Error and Measurement Error." Annals of statistics. 2010 Jan 1; 38(4):2351-2387.
2009 Jul
Lee HY, Topham DJ, Park SY, Hollenbaugh J, Treanor J, Mosmann TR, Jin X, Ward B, Miao H, Holden-Wiltse J, Perelson AS, Zand M, Wu H. "Simulation and prediction of the adaptive immune response to influenza A virus infection." Journal of virology. 2009 Jul; 83(14):7151-65. Epub 2009 May 13.
2009 Mar
Miao H, Dykes C, Demeter LM, Wu H. "Differential equation modeling of HIV viral fitness experiments: model identification, model selection, and multimodel inference." Biometrics. 2009 Mar; 65(1):292-300. Epub 2008 May 28.
2008 Oct
Miao H, Gracewski SM, Dalecki D. "Ultrasonic excitation of a bubble inside a deformable tube: implications for ultrasonically induced hemorrhage." The Journal of the Acoustical Society of America. 2008 Oct; 124(4):2374-84.
2008 Aug
Miao H, Dykes C, Demeter LM, Cavenaugh J, Park SY, Perelson AS, Wu H. "Modeling and estimation of kinetic parameters and replicative fitness of HIV-1 from flow-cytometry-based growth competition experiments." Bulletin of mathematical biology. 2008 Aug; 70(6):1749-71. Epub 2008 Jul 22.
2008 Apr
Wu H, Zhu H, Miao H, Perelson AS. "Parameter identifiability and estimation of HIV/AIDS dynamic models." Bulletin of mathematical biology. 2008 Apr; 70(3):785-99. Epub 2008 Feb 05.
Miao, H.; Gracewski, S.M. "Coupled FEM and BEM code for simulating acoustically excited bubbles near deformable structures". Computational Mechanics. 2008; 42(1): 95-106.
2005 Mar
Gracewski SM, Miao H, Dalecki D. "Ultrasonic excitation of a bubble near a rigid or deformable sphere: implications for ultrasonically induced hemolysis." The Journal of the Acoustical Society of America. 2005 Mar; 117(3 Pt 1):1440-7.
Miao, H.; Gracewski, S.M. "Response of an ultrasonically excited bubble near a fixed rigid object". Acoustic Research Letters Online. 2005; 6(3): 144-150. Link