SNPs in the Human CArGome

Gene Name

Conserved CArG

Conserved CArG Coordinates

CArG Location

SNP

Position

UCSC Genome Browser Views

CYR61a

CCTTTTA(T/C)AG

Chr1: 85822918 - 85822927

3' INTERGENIC

rs10158350

8

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CYR61

CTTTTA(T/C)AGG

Chr1: 85822919 - 85822928

3' INTERGENIC

rs10158350

7

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EPHA4

C(C/A)AAATTAGA

Chr2: 222141375 - 222141384

INTRONIC

rs10175097

2

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GRK6

CCCTAA(T/C)TGG

Chr5: 176786011 - 176786020

5' PROMOTER

rs3763079

7

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KLF6c

(C/A)CTTATTTGG

Chr10: 3815334 - 3815343

INTRONIC

rs10795076

1

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LDB3

GCTTAAAT(G/A)G

Chr10: 88420340 - 88420349

INTRONIC

rs12570315

9

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PRPF40A

CCAAAATTT(G/C)

Chr2: 153281654 - 153281663

INTRONIC

rs4664604

10

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ACTB

CCTTATATGG

Chr7: 5538183 - 5538192

5' PROMOTER

rs2966449

32

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ANKMY2

CCAGATTTGG

Chr7: 16654023 - 16654032

INTRONIC

rs17620110

-35

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ANKRD1

CTAATTATGG

Chr10: 92671459 - 92671468

5' PROMOTER

rs3824739

4

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AOC3

CCATGTAAGG

Chr17: 38256644 - 38256653

5' PROMOTER

rs33918079

-14

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BTG2

CCTAAAAAGG

Chr1: 201539541 - 201539550

5' PROMOTER

rs16851268

-16

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CAP1

CCATCTATGG

Chr1: 40278262 - 40278271

5' PROMOTER

rs3806203

-4

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CYR61

CCATGTATGG

Chr1: 85819924 - 85819933

INTRONIC

rs9658584

-25

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DMPK

CCTTTTGTGG

Chr19: 50976000 - 50976009

INTRONIC

rs2854336

32

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EPHA4

CCTTTTTAGA

Chr2: 222142004 - 222142013

INTRONIC

rs6748287

-10

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FEN1

CCATTTATTG

Chr11: 61316054 - 61316063

INTRONIC

rs695865

-32

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FYN

CCTATAAAGA

Chr6: 112302318 - 112302327

5' PROMOTER

rs1409837

14

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GADD45Gb

CTATATAAGG

Chr9: 91409717 - 91409726

5' PROMOTER

rs3138499

15

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GADD45G

CTATATAAGG

Chr9: 91409717 - 91409726

5' PROMOTER

rs3138497

-1

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GADD45G

CCTTTTAAGG

Chr9: 91409480 - 91409489

5' PROMOTER

rs3138495

-16

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GADD45G

CTATATAAGG

Chr9: 91409717 - 91409726

5' PROMOTER

rs3138498

9

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GSN

CCTAAAATGG

Chr9: 123101069 - 123101078

INTRONIC

rs3761855

7

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HBEGF

CTATATTTGG

Chr5: 139704884 - 139704893

INTRONIC

rs4150202

17

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HOXD11

CCAATTTAGG

Chr2: 176681284 - 176681293

INTRONIC

rs847146

35

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IGF1

CCTAAACAGG

Chr12: 101401250 - 101401259

5' PROMOTER

rs12579077

34

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IL17RB

CCTAATTTGG

Chr3: 53857661 - 53857670

INTRONIC

rs2232333

31

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IL17RB

CCTAATTTGG

Chr3: 53857661 - 53857670

INTRONIC

rs1025690

33

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IL6

CTTAATAAGG

Chr7: 22733198 - 22733207

INTRONIC

rs1800795

-28

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M6PR

CCTAATTTTG

Chr12: 8991974 - 8991983

INTRONIC

rs1805758

2

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MAPRE2

CCTTTTTAGA

Chr18: 30872902 - 30872911

5' PROMOTER

rs3937008

-11

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MCL1

CCTTTTATGG

Chr1: 148818797 - 148818806

5' PROMOTER

rs34468496

14

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PCDH18

ACTTAAAAGG

Chr4: 138674329 - 138674338

5' PROMOTER

rs11939766

4

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PRM1

CCATATATGG

Chr16: 11282800 - 11282809

5' PROMOTER

rs2301365

13

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RING1

CCATAAAAGA

Chr6: 33281848 - 33281857

INTRONIC

rs439205

-28

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TGFBR1

CCTTAAAAGG

Chr9: 100906075 - 100906084

5' PROMOTER

rs11568742

28

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TJP1

CAAATATTGG

Chr15: 27899304 - 27899313

INTRONIC

rs45563136

19

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TNNT2

CCAAGAAAGG

Chr1: 199611959 - 199611968

INTRONIC

rs947485

-7

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TPM2

CTATATATGG

Chr9: 35677545 - 35677554

INTRONIC

rs3793537

-2

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Each row represents a SNP (dbSNP 128) mapped within (top set) or near (bottom set) a conserved CArG. Conserved CArG Coordinates are based on Ensembl (Release 53), using the H.Sa Mar 2006 (HG 18) Assembly. Wild type and SNP alleles are shown in parentheses for SNPs within the CArG box. Position is the number of base pairs from the SNP to the CArG box (Negative is upstream from transcription start site (TSS); positive is downstream). CArG Location is with respect to the target gene.
a SNP rs10158350 was found in two conserved CArGs for gene CYR61.
b Three unique SNPs were found near the CArG ‘CTATATAAGG’ for gene GADD45G.
c The CArG box near gene KLF6 is a consensus CArG box.