URMC / New York Influenza Center of Excellence / Publications / 2016 Publications 2016 Publications 2020 | 2019 | 2018 | 2017 | 2016 | Archived 2016, December McCarthy CE, Duffney PF, Gelein R, Thatcher TH, Elder A, Phipps RP, Sime PJ Dung biomass smoke activates inflammatory signaling pathways in human small airway epithelial cells. PMID: 27836898 McCarthy CE, Duffney PF, Gelein R, Thatcher TH, Elder A, Phipps RP, Sime PJ Dung biomass smoke activates inflammatory signaling pathways in human small airway epithelial cells. PMID: 27836898 Nogales A, Martínez-Sobrido L Reverse Genetics Approaches for the Development of Influenza Vaccines. PMID: 28025504 Millet JK, Whittaker GR Murine Leukemia Virus (MLV)-based Coronavirus Spike-pseudotyped Particle Production and Infection. PMID: 28018942 Lee J, Boutz DR, Chromikova V, Joyce MG, Vollmers C, Leung K, Horton AP, DeKosky BJ, Lee CH, Lavinder JJ, Murrin EM, Chrysostomou C, Hoi KH, Tsybovsky Y, Thomas PV, Druz A, Zhang B, Zhang Y, Wang L, Kong WP, Park D, Popova LI, Dekker CL, Davis MM, Carter CE, Ross TM, Ellington AD, Wilson PC, Marcotte EM, Mascola JR, Ippolito GC, Krammer F, Quake SR, Kwong PD, Georgiou G Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination. PMID: 27820605 2016, November Hermann T Small molecules targeting viral RNA. PMID: 27307213 2016, October Lenartowicz E, Nogales A, Kierzek E, Kierzek R, Martínez-Sobrido L, Turner DH Antisense Oligonucleotides Targeting Influenza A Segment 8 Genomic RNA Inhibit Viral Replication. PMID: 27463680 Lenartowicz E, Nogales A, Kierzek E, Kierzek R, Martínez-Sobrido L, Turner DH Antisense Oligonucleotides Targeting Influenza A Segment 8 Genomic RNA Inhibit Viral Replication. PMID: 27463680 Neu KE, Henry Dunand CJ, Wilson PC Heads, stalks and everything else: how can antibodies eradicate influenza as a human disease? PMID: 27268395 He W, Tan GS, Mullarkey CE, Lee AJ, Lam MM, Krammer F, Henry C, Wilson PC, Ashkar AA, Palese P, Miller MS Epitope specificity plays a critical role in regulating antibody-dependent cell-mediated cytotoxicity against influenza A virus. PMID: 27698132 Hsu HL, Millet JK, Costello DA, Whittaker GR, Daniel S. Viral fusion efficacy of specific H3N2 influenza virus reassortant combinations at single-particle level. PMID: 27752100 Romero-Beltran L, Baker SF, Puerto-Solís M, González-Losa R, Conde-Ferraez L, Alvarez-Sánchez LC, Martínez-Sobrido L, Ayora-Talavera G Mutations at highly conserved residues in influenza A(H1N1)pdm09 virus affect neuraminidase activity. PMID: 27596738 Millet JK, Goldstein ME, Labitt RN, Hsu HL, Daniel S, Whittaker GR A camel-derived MERS-CoV with a variant spike protein cleavage site and distinct fusion activation properties. PMID: 27999426 2016, September Millet JK, Séron K, Labitt RN, Danneels A, Palmer KE, Whittaker GR, Dubuisson J, Belouzard S Middle East respiratory syndrome coronavirus infection is inhibited by griffithsin. PMID: 27424494 Sun X, Hu F, Wu S, Qiu X, Linel P, Wu H Controllability and stability analysis of large transcriptomic dynamic systems for host response to influenza infection in human. PMID: 29928721 Carey M, Wu S, Gan G, Wu H Correlation-based iterative clustering methods for time course data: The identification of temporal gene response modules for influenza infection in humans. PMID: 29928719 2016, August Wang K, Langevin S, O'Hern CS, Shattuck MD, Ogle S, Forero A, Morrison J, Slayden R, Katze MG, Kirby M Anomaly Detection in Host Signaling Pathways for the Early Prognosis of Acute Infection. PMID: 27532264 DeDiego ML, Nogales A, Lambert-Emo K, Martinez-Sobrido L, Topham DJ An NS1 protein mutation (I64T) affects interferon responses and virulence of circulation H3N2 human influenza A viruses PMID: 27535054 Anderson CS, DeDiego ML, Thakar J, Topham DJ. Novel Sequence-Based Mapping of Recently Emerging H5NX Influenza Viruses Reveals Pandemic Vaccine Candidates. PMID: 27494186 2016, July Hayashi T, Chaimayo C, McGuinness J, Takimoto T Critical Role of the PA-X C-Terminal Domain of Influenza A Virus in Its Subcellular Localization and Shutoff Activity. PMID: 27226377 2016, June DeDiego ML, Anderson CS, Yang H, Holden-Wiltse J, Fitzgerald T, Treanor JJ, Topham DJ Directed selection of influenza virus produces antigenic variants that match circulating human virus isolates and escape from vaccine-mediated immune protection. PMID: 26854888 Henry Dunand CJ, Leon PE, Huang M, Choi A, Chromikova V, Ho IY, Tan GS, Cruz J, Hirsh A, Zheng NY, Mullarkey CE, Ennis FA, Terajima M, Treanor JJ, Topham DJ, Subbarao K, Palese P, Krammer F, Wilson PC. Both Neutralizing and Non-Neutralizing Human H7N9 Influenza Vaccine-Induced Monoclonal Antibodies Confer Protection. PMID: 27281570 Jiang T, Nogales A, Baker SF, Martinez-Sobrido L, Turner DH Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell Culture. PMID: 27272307 Jiang T, Nogales A, Baker SF, Martinez-Sobrido L, Turner DH Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell Culture. PMID: 27272307 Nogales A, DeDiego ML, Topham DJ, Martínez-Sobrido L Rearrangement of Influenza Virus Spliced Segments for the Development of Live-Attenuated Vaccines. PMID: 27122587 Breen M, Nogales A, Baker SF, Martínez-Sobrido L Replication-Competent Influenza A Viruses Expressing Reporter Genes. PMID: 27347991 DiPiazza A, Richards K, Batarse F, Lockard L, Zeng H, García-Sastre A, Albrecht RA, Sant AJ. Flow Cytometric and Cytokine ELISpot Approaches to Characterize the Cell-mediated Immune Response in Ferrets Following Influenza Virus Infection. PMID: 27356897 Knowlden ZA, Sant AJ. CD4 T cell epitope specificity determines follicular versus non-follicular helper differentiation in the polyclonal response to influenza infection or vaccination. PMID: 27329272 2016, March Rappazzo CG, Watkins HC, Guarino CM, Chau A, Lopez JL, DeLisa MP, Leifer CA, Whittaker GR, Putnam D Recombinant M2e outer membrane vesicle vaccines protect against lethal influenza A challenge in BALB/c mice. PMID: 26827663 White JM, Whittaker GR. Fusion of Enveloped Viruses in Endosomes. PMID: 26935856 2016, February Roldán JS, Martínez MG, Forlenza MB, Whittaker GR, Candurra NA Human transferrin receptor triggers an alternative Tacaribe virus internalization pathway. PMID: 26559962 Anderson CS, DeDiego ML, Topham DJ, Thakar J. Boolean modeling of Cellular and Molecular pathways involved in Influenza Infection. PMID: 26981147 Tisoncik-Go J, Gasper DJ, Kyle JE, Eisfeld AJ, Selinger C, Hatta M, Morrison J, Korth MJ, Zink EM, Kim YM, Schepmoes AA, Nicora CD, Purvine SO, Weitz KK, Peng X, Green RR, Tilton SC, Webb-Robertson BJ, Waters KM, Metz TO, Smith RD, Kawaoka Y, Suresh M, Josset L, Katze MG. Integrated omics analysis of host responses during pandemic H1N1 influenza infection. PMID: 26867183 Nogales A, Rodríguez-Sánchez I, Monte K, Lenschow DJ, Perez DR, Martínez-Sobrido L Replication-competent fluorescent-expressing influenza B virus. PMID: 26590325 DeDiego ML, Anderson CS, Yang H, Holden-Wiltse J, Fitzgerald T, Treanor JJ, Topham DJ. Directed selection of influenza virus produces antigenic variants that match circulating human virus isolates and escape from vaccine mediated immune protection. PMID: 26854888 2016, January Breen M, Nogales A, Baker SF, Perez DR, Martínez-Sobrido L Replication-Competent Influenza A and B Viruses Expressing a Fluorescent Dynamic Timer Protein for In Vitro and In Vivo Studies. PMID: 26809059 DiPiazza A, Richards KA, Knowlden ZA, Nayak JL, Sant AJ. The Role of CD4 T Cell Memory in Generating Protective Immunity to Novel and Potentially Pandemic Strains of Influenza. PMID: 26834750