2016 Oct
Misra RS, Bhattacharya S, Huyck HL, Wang JE, Slaunwhite CG, Slaunwhite SL, Wightman TR, Secor-Socha S, Misra SK, Bushnell TP, Reynolds AM, Ryan RM, Quataert SA, Pryhuber GS, Mariani TJ. "Flow-based sorting of neonatal lymphocyte populations for transcriptomics analysis." Journal of immunological methods. 2016 Oct; 437:13-20. Epub 2016 Jul 18.
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2016 Jul
Solleti SK, Srisuma S, Bhattacharya S, Rangel-Moreno J, Bijli KM, Randall TD, Rahman A, Mariani TJ. "Serpine2 deficiency results in lung lymphocyte accumulation and bronchus-associated lymphoid tissue formation." FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2016 Jul; 30(7):2615-26. Epub 2016 Apr 08.
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2016 Jun
Ahmad A, Bhattacharya S, Sridhar A, Iqbal AM, Mariani TJ. "Recurrent copy number variants associated with bronchopulmonary dysplasia." Pediatric research. 2016 Jun; 79(6):940-5. Epub 2016 Mar 14.
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2015 Aug 1
Solleti SK, Simon DM, Srisuma S, Arikan MC, Bhattacharya S, Rangasamy T, Bijli KM, Rahman A, Crossno JT, Shapiro SD, Mariani TJ. "Airway epithelial cell PPAR? modulates cigarette smoke-induced chemokine expression and emphysema susceptibility in mice." American journal of physiology. Lung cellular and molecular physiology. 2015 Aug 1; 309(3):L293-304. Epub 2015 May 29.
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2015 Jul
Cuna A, Halloran B, Faye-Petersen O, Kelly D, Crossman DK, Cui X, Pandit K, Kaminski N, Bhattacharya S, Ahmad A, Mariani TJ, Ambalavanan N. "Alterations in gene expression and DNA methylation during murine and human lung alveolar septation." American journal of respiratory cell and molecular biology. 2015 Jul; 53(1):60-73.
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2015 Mar
Ambalavanan N, Cotten CM, Page GP, Carlo WA, Murray JC, Bhattacharya S, Mariani TJ, Cuna AC, Faye-Petersen OM, Kelly D, Higgins RD, . "Integrated genomic analyses in bronchopulmonary dysplasia." The Journal of pediatrics. 2015 Mar; 166(3):531-7.e13. Epub 2014 Nov 06.
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2014 Oct 1
Bhattacharya S, Zhou Z, Yee M, Chu CY, Lopez AM, Lunger VA, Solleti SK, Resseguie E, Buczynski BW, Mariani TJ, O'Reilly MA. "The genome-wide transcriptional response to neonatal hyperoxia identifies Ahr as a key regulator." American journal of physiology. Lung cellular and molecular physiology. 2014 Oct 1; 307(7):L516-23. Epub 2014 Aug 22.
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2013 Apr
Bhattacharya S, Mariani TJ. "Systems biology approaches to identify developmental bases for lung diseases." Pediatric research. 2013 Apr; 73(4 Pt 2):514-22. Epub 2013 Jan 11.
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2012 Aug 15
Bhattacharya S, Go D, Krenitsky DL, Huyck HL, Solleti SK, Lunger VA, Metlay L, Srisuma S, Wert SE, Mariani TJ, Pryhuber GS. "Genome-wide transcriptional profiling reveals connective tissue mast cell accumulation in bronchopulmonary dysplasia." American journal of respiratory and critical care medicine. 2012 Aug 15; 186(4):349-58. Epub 2012 Jun 21.
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2011 Jun 1
Hersh CP, Silverman EK, Gascon J, Bhattacharya S, Klanderman BJ, Litonjua AA, Lefebvre V, Sparrow D, Reilly JJ, Anderson WH, Lomas DA, Mariani TJ, . "SOX5 is a candidate gene for chronic obstructive pulmonary disease susceptibility and is necessary for lung development." American journal of respiratory and critical care medicine. 2011 Jun 1; 183(11):1482-9. Epub 2011 Feb 17.
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2011
Bhattacharya S, Tyagi S, Srisuma S, Demeo DL, Shapiro SD, Bueno R, Silverman EK, Reilly JJ, Mariani TJ. "Peripheral blood gene expression profiles in COPD subjects." Journal of clinical bioinformatics. 2011 1(1):12. Epub 2011 Apr 24.
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2011
Brehm JM, Hagiwara K, Tesfaigzi Y, Bruse S, Mariani TJ, Bhattacharya S, Boutaoui N, Ziniti JP, Soto-Quiros ME, Avila L, Cho MH, Himes B, Litonjua AA, Jacobson F, Bakke P, Gulsvik A, Anderson WH, Lomas DA, Forno E, Datta S, Silverman EK, Celedón JC. "Identification of FGF7 as a novel susceptibility locus for chronic obstructive pulmonary disease." Thorax. 2011 66(12):1085-90. Epub 2011 Sep 15.
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2010 Apr 15
Srisuma S, Bhattacharya S, Simon DM, Solleti SK, Tyagi S, Starcher B, Mariani TJ. "Fibroblast growth factor receptors control epithelial-mesenchymal interactions necessary for alveolar elastogenesis." American journal of respiratory and critical care medicine. 2010 Apr 15; 181(8):838-50. Epub 2010 Jan 21.
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2010 Jan 1
Kho AT, Bhattacharya S, Tantisira KG, Carey VJ, Gaedigk R, Leeder JS, Kohane IS, Weiss ST, Mariani TJ. "Transcriptomic analysis of human lung development." American journal of respiratory and critical care medicine. 2010 Jan 1; 181(1):54-63. Epub 2009 Oct 08.
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2009 Oct
DeMeo DL, Mariani T, Bhattacharya S, Srisuma S, Lange C, Litonjua A, Bueno R, Pillai SG, Lomas DA, Sparrow D, Shapiro SD, Criner GJ, Kim HP, Chen Z, Choi AM, Reilly J, Silverman EK. "Integration of genomic and genetic approaches implicates IREB2 as a COPD susceptibility gene." American journal of human genetics. 2009 Oct; 85(4):493-502.
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2009 Aug
Bhattacharya S, Mariani TJ. "Array of hope: expression profiling identifies disease biomarkers and mechanism." Biochemical Society transactions. 2009 Aug; 37(Pt 4):855-62.
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2009 Mar
Bhattacharya S, Srisuma S, Demeo DL, Shapiro SD, Bueno R, Silverman EK, Reilly JJ, Mariani TJ. "Molecular biomarkers for quantitative and discrete COPD phenotypes." American journal of respiratory cell and molecular biology. 2009 Mar; 40(3):359-67. Epub 2008 Oct 10.
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2009 Jan
Kho AT, Bhattacharya S, Mecham BH, Hong J, Kohane IS, Mariani TJ. "Expression profiles of the mouse lung identify a molecular signature of time-to-birth." American journal of respiratory cell and molecular biology. 2009 Jan; 40(1):47-57. Epub 2008 Jul 29.
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2009
Du R, Tantisira K, Carey V, Bhattacharya S, Metje S, Kho AT, Klanderman BJ, Gaedigk R, Lazarus R, Mariani TJ, Leeder JS, Weiss ST. "Platform dependence of inference on gene-wise and gene-set involvement in human lung development." BMC bioinformatics. 2009 10:189. Epub 2009 Jun 19.
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2007 Sep
Craig FE, Johnson LR, Harvey SA, Nalesnik MA, Luo JH, Bhattacharya SD, Swerdlow SH. "Gene expression profiling of Epstein-Barr virus-positive and -negative monomorphic B-cell posttransplant lymphoproliferative disorders." Diagnostic molecular pathology : the American journal of surgical pathology, part B. 2007 Sep; 16(3):158-68.
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2007
MacDonald TJ, Pollack IF, Okada H, Bhattacharya S, Lyons-Weiler J. "Progression-associated genes in astrocytoma identified by novel microarray gene expression data reanalysis." Methods in molecular biology. 2007 377:203-22.
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2006 Aug
Bhattacharya S, Srisuma S, Demeo DL, Reilly JJ, Bueno R, Silverman EK, Mariani TJ. "Microarray data-based prioritization of chronic obstructive pulmonary disease susceptibility genes." Proceedings of the American Thoracic Society. 2006 Aug; 3(6):472.
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2006 Aug
Simon DM, Arikan MC, Srisuma S, Bhattacharya S, Andalcio T, Shapiro SD, Mariani TJ. "Epithelial cell PPARgamma is an endogenous regulator of normal lung maturation and maintenance." Proceedings of the American Thoracic Society. 2006 Aug; 3(6):510-1.
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2006 Jul
Simon DM, Arikan MC, Srisuma S, Bhattacharya S, Tsai LW, Ingenito EP, Gonzalez F, Shapiro SD, Mariani TJ. "Epithelial cell PPAR[gamma] contributes to normal lung maturation." FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2006 Jul; 20(9):1507-9. Epub 2006 May 23.
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2005
Bhattacharya S, Mariani TJ. "Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling." Nucleic acids research. 2005 33(18):e157. Epub 2005 Oct 13.
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2003 Mar
Lyons-Weiler J, Patel S, Bhattacharya S. "A classification-based machine learning approach for the analysis of genome-wide expression data." Genome research. 2003 Mar; 13(3):503-12.
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2003
Bhattacharya S, Long D, Lyons-Weiler J. "Overcoming confounded controls in the analysis of gene expression data from microarray experiments." Applied bioinformatics. 2003 2(4):197-208.
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