Publications
Showing all 30 journal articles & 1 books available
Journal Articles
5/2017
Du Y, Kitzmiller JA, Sridharan A, Perl AK, Bridges JP, Misra RS, Pryhuber GS, Mariani TJ, Bhattacharya S, Guo M, Potter SS, Dexheimer P, Aronow B, Jobe AH, Whitsett JA, Xu Y. "Lung Gene Expression Analysis (LGEA): an integrative web portal for comprehensive gene expression data analysis in lung development." Thorax.. 2017 May 0; 72(5):481-484. Epub 2017 Jan 09.
4/24/2017
Solleti SK, Bhattacharya S, Ahmad A, Wang Q, Mereness J, Rangasamy T, Mariani TJ. "MicroRNA expression profiling defines the impact of electronic cigarettes on human airway epithelial cells." Scientific reports.. 2017 Apr 24; 7(1):1081. Epub 2017 Apr 24.
10/2016
Misra RS, Bhattacharya S, Huyck HL, Wang JE, Slaunwhite CG, Slaunwhite SL, Wightman TR, Secor-Socha S, Misra SK, Bushnell TP, Reynolds AM, Ryan RM, Quataert SA, Pryhuber GS, Mariani TJ. "Flow-based sorting of neonatal lymphocyte populations for transcriptomics analysis." Journal of immunological methods.. 2016 Oct 0; 437:13-20. Epub 2016 Jul 18.
9/23/2016
Chu CY, Qiu X, Wang L, Bhattacharya S, Lofthus G, Corbett A, Holden-Wiltse J, Grier A, Tesini B, Gill SR, Falsey AR, Caserta MT, Walsh EE, Mariani TJ. "The Healthy Infant Nasal Transcriptome: A Benchmark Study." Scientific reports.. 2016 Sep 23; 6:33994. Epub 2016 Sep 23.
7/2016
Solleti SK, Srisuma S, Bhattacharya S, Rangel-Moreno J, Bijli KM, Randall TD, Rahman A, Mariani TJ. "Serpine2 deficiency results in lung lymphocyte accumulation and bronchus-associated lymphoid tissue formation." FASEB journal : official publication of the Federation of American Societies for Experimental Biology.. 2016 Jul 0; 30(7):2615-26. Epub 2016 Apr 08.
6/2016
Ahmad A, Bhattacharya S, Sridhar A, Iqbal AM, Mariani TJ. "Recurrent copy number variants associated with bronchopulmonary dysplasia." Pediatric research.. 2016 Jun 0; 79(6):940-5. Epub 2016 Mar 14.
8/1/2015
Solleti SK, Simon DM, Srisuma S, Arikan MC, Bhattacharya S, Rangasamy T, Bijli KM, Rahman A, Crossno JT, Shapiro SD, Mariani TJ. "Airway epithelial cell PPAR? modulates cigarette smoke-induced chemokine expression and emphysema susceptibility in mice." American journal of physiology. Lung cellular and molecular physiology.. 2015 Aug 1; 309(3):L293-304. Epub 2015 May 29.
7/2015
Cuna A, Halloran B, Faye-Petersen O, Kelly D, Crossman DK, Cui X, Pandit K, Kaminski N, Bhattacharya S, Ahmad A, Mariani TJ, Ambalavanan N. "Alterations in gene expression and DNA methylation during murine and human lung alveolar septation." American journal of respiratory cell and molecular biology.. 2015 Jul 0; 53(1):60-73.
3/2015
Ambalavanan N, Cotten CM, Page GP, Carlo WA, Murray JC, Bhattacharya S, Mariani TJ, Cuna AC, Faye-Petersen OM, Kelly D, Higgins RD, . "Integrated genomic analyses in bronchopulmonary dysplasia." The Journal of pediatrics.. 2015 Mar 0; 166(3):531-7.e13. Epub 2014 Nov 06.
10/1/2014
Bhattacharya S, Zhou Z, Yee M, Chu CY, Lopez AM, Lunger VA, Solleti SK, Resseguie E, Buczynski BW, Mariani TJ, O'Reilly MA. "The genome-wide transcriptional response to neonatal hyperoxia identifies Ahr as a key regulator." American journal of physiology. Lung cellular and molecular physiology.. 2014 Oct 1; 307(7):L516-23. Epub 2014 Aug 22.
4/2013
Bhattacharya S, Mariani TJ. "Systems biology approaches to identify developmental bases for lung diseases." Pediatric research.. 2013 Apr 0; 73(4 Pt 2):514-22. Epub 2013 Jan 11.
8/15/2012
Bhattacharya S, Go D, Krenitsky DL, Huyck HL, Solleti SK, Lunger VA, Metlay L, Srisuma S, Wert SE, Mariani TJ, Pryhuber GS. "Genome-wide transcriptional profiling reveals connective tissue mast cell accumulation in bronchopulmonary dysplasia." American journal of respiratory and critical care medicine.. 2012 Aug 15; 186(4):349-58. Epub 2012 Jun 21.
12/2011
Brehm JM, Hagiwara K, Tesfaigzi Y, Bruse S, Mariani TJ, Bhattacharya S, Boutaoui N, Ziniti JP, Soto-Quiros ME, Avila L, Cho MH, Himes B, Litonjua AA, Jacobson F, Bakke P, Gulsvik A, Anderson WH, Lomas DA, Forno E, Datta S, Silverman EK, Celedón JC. "Identification of FGF7 as a novel susceptibility locus for chronic obstructive pulmonary disease." Thorax.. 2011 Dec 0; 66(12):1085-90. Epub 2011 Sep 15.
6/1/2011
Hersh CP, Silverman EK, Gascon J, Bhattacharya S, Klanderman BJ, Litonjua AA, Lefebvre V, Sparrow D, Reilly JJ, Anderson WH, Lomas DA, Mariani TJ, . "SOX5 is a candidate gene for chronic obstructive pulmonary disease susceptibility and is necessary for lung development." American journal of respiratory and critical care medicine.. 2011 Jun 1; 183(11):1482-9. Epub 2011 Feb 17.
4/24/2011
Bhattacharya S, Tyagi S, Srisuma S, Demeo DL, Shapiro SD, Bueno R, Silverman EK, Reilly JJ, Mariani TJ. "Peripheral blood gene expression profiles in COPD subjects." Journal of clinical bioinformatics. 2011 Apr 24; 1(1):12. Epub 2011 Apr 24.
4/15/2010
Srisuma S, Bhattacharya S, Simon DM, Solleti SK, Tyagi S, Starcher B, Mariani TJ. "Fibroblast growth factor receptors control epithelial-mesenchymal interactions necessary for alveolar elastogenesis." American journal of respiratory and critical care medicine.. 2010 Apr 15; 181(8):838-50. Epub 2010 Jan 21.
1/1/2010
Kho AT, Bhattacharya S, Tantisira KG, Carey VJ, Gaedigk R, Leeder JS, Kohane IS, Weiss ST, Mariani TJ. "Transcriptomic analysis of human lung development." American journal of respiratory and critical care medicine.. 2010 Jan 1; 181(1):54-63. Epub 2009 Oct 08.
10/2009
DeMeo DL, Mariani T, Bhattacharya S, Srisuma S, Lange C, Litonjua A, Bueno R, Pillai SG, Lomas DA, Sparrow D, Shapiro SD, Criner GJ, Kim HP, Chen Z, Choi AM, Reilly J, Silverman EK. "Integration of genomic and genetic approaches implicates IREB2 as a COPD susceptibility gene." American journal of human genetics.. 2009 Oct 0; 85(4):493-502.
8/2009
Bhattacharya S, Mariani TJ. "Array of hope: expression profiling identifies disease biomarkers and mechanism." Biochemical Society transactions.. 2009 Aug 0; 37(Pt 4):855-62.
6/19/2009
Du R, Tantisira K, Carey V, Bhattacharya S, Metje S, Kho AT, Klanderman BJ, Gaedigk R, Lazarus R, Mariani TJ, Leeder JS, Weiss ST. "Platform dependence of inference on gene-wise and gene-set involvement in human lung development." BMC bioinformatics. 2009 Jun 19; 10:189. Epub 2009 Jun 19.
3/2009
Bhattacharya S, Srisuma S, Demeo DL, Shapiro SD, Bueno R, Silverman EK, Reilly JJ, Mariani TJ. "Molecular biomarkers for quantitative and discrete COPD phenotypes." American journal of respiratory cell and molecular biology.. 2009 Mar 0; 40(3):359-67. Epub 2008 Oct 10.
1/2009
Kho AT, Bhattacharya S, Mecham BH, Hong J, Kohane IS, Mariani TJ. "Expression profiles of the mouse lung identify a molecular signature of time-to-birth." American journal of respiratory cell and molecular biology.. 2009 Jan 0; 40(1):47-57. Epub 2008 Jul 29.
9/2007
Craig FE, Johnson LR, Harvey SA, Nalesnik MA, Luo JH, Bhattacharya SD, Swerdlow SH. "Gene expression profiling of Epstein-Barr virus-positive and -negative monomorphic B-cell posttransplant lymphoproliferative disorders." Diagnostic molecular pathology : the American journal of surgical pathology, part B.. 2007 Sep 0; 16(3):158-68.
2007
MacDonald TJ, Pollack IF, Okada H, Bhattacharya S, Lyons-Weiler J. "Progression-associated genes in astrocytoma identified by novel microarray gene expression data reanalysis." Methods in molecular biology.. 2007 377:203-22.
8/2006
Bhattacharya S, Srisuma S, Demeo DL, Reilly JJ, Bueno R, Silverman EK, Mariani TJ. "Microarray data-based prioritization of chronic obstructive pulmonary disease susceptibility genes." Proceedings of the American Thoracic Society. 2006 Aug 0; 3(6):472.
8/2006
Simon DM, Arikan MC, Srisuma S, Bhattacharya S, Andalcio T, Shapiro SD, Mariani TJ. "Epithelial cell PPARgamma is an endogenous regulator of normal lung maturation and maintenance." Proceedings of the American Thoracic Society. 2006 Aug 0; 3(6):510-1.
7/2006
Simon DM, Arikan MC, Srisuma S, Bhattacharya S, Tsai LW, Ingenito EP, Gonzalez F, Shapiro SD, Mariani TJ. "Epithelial cell PPAR[gamma] contributes to normal lung maturation." FASEB journal : official publication of the Federation of American Societies for Experimental Biology.. 2006 Jul 0; 20(9):1507-9. Epub 2006 May 23.
10/13/2005
Bhattacharya S, Mariani TJ. "Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling." Nucleic acids research.. 2005 Oct 13; 33(18):e157. Epub 2005 Oct 13.
3/2003
Lyons-Weiler J, Patel S, Bhattacharya S. "A classification-based machine learning approach for the analysis of genome-wide expression data." Genome research.. 2003 Mar 0; 13(3):503-12.
2003
Bhattacharya S, Long D, Lyons-Weiler J. "Overcoming confounded controls in the analysis of gene expression data from microarray experiments." Applied bioinformatics. 2003 2(4):197-208.