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Dmitri N. Ermolenko, Ph.D.

Publications

Showing all 32 journal articles & 0 books available

Journal Articles

12/6/2016
Ling C, Ermolenko DN. "Caught on Camera: Intermediates of Ribosome Recycling." Structure.. 2016 Dec 6; 24(12):2035-2036.

9/2016
Ling C, Ermolenko DN. "Structural insights into ribosome translocation." Wiley interdisciplinary reviews. RNA.. 2016 Sep 0; 7(5):620-36. Epub 2016 Apr 27.

5/22/2016
Salsi E, Farah E, Ermolenko DN. "EF-G Activation by Phosphate Analogs." Journal of molecular biology.. 2016 May 22; 428(10 Pt B):2248-58. Epub 2016 Apr 08.

3/8/2016
Agrawal AA, Salsi E, Chatrikhi R, Henderson S, Jenkins JL, Green MR, Ermolenko DN, Kielkopf CL. "An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal." Nature communications. 2016 Mar 8; 7:10950. Epub 2016 Mar 08.

12/29/2015
Ling C, Ermolenko DN. "Initiation factor 2 stabilizes the ribosome in a semirotated conformation." Proceedings of the National Academy of Sciences of the United States of America.. 2015 Dec 29; 112(52):15874-9. Epub 2015 Dec 14.

6/2/2015
Ling C, Ermolenko DN. "Ribosome subunit joining frozen in time." Structure.. 2015 Jun 2; 23(6):977-8.

1/30/2015
Salsi E, Farah E, Netter Z, Dann J, Ermolenko DN. "Movement of elongation factor G between compact and extended conformations." Journal of molecular biology.. 2015 Jan 30; 427(2):454-67. Epub 2014 Nov 15.

10/21/2014
Salsi E, Farah E, Dann J, Ermolenko DN. "Following movement of domain IV of elongation factor G during ribosomal translocation." Proceedings of the National Academy of Sciences of the United States of America.. 2014 Oct 21; 111(42):15060-5. Epub 2014 Oct 06.

9/1/2014
Kurosaki T, Li W, Hoque M, Popp MW, Ermolenko DN, Tian B, Maquat LE. "A post-translational regulatory switch on UPF1 controls targeted mRNA degradation." Genes & development.. 2014 Sep 1; 28(17):1900-16.

12/24/2013
Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N. "Structure of the ribosome with elongation factor G trapped in the pretranslocation state." Proceedings of the National Academy of Sciences of the United States of America.. 2013 Dec 24; 110(52):20994-9. Epub 2013 Dec 09.

10/22/2013
Azpurua J, Ke Z, Chen IX, Zhang Q, Ermolenko DN, Zhang ZD, Gorbunova V, Seluanov A. "Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage." Proceedings of the National Academy of Sciences of the United States of America.. 2013 Oct 22; 110(43):17350-5. Epub 2013 Sep 30.

7/23/2013
Svidritskiy E, Ling C, Ermolenko DN, Korostelev AA. "Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome." Proceedings of the National Academy of Sciences of the United States of America.. 2013 Jul 23; 110(30):12283-8. Epub 2013 Jul 03.

2/2013
Ermolenko DN, Cornish PV, Ha T, Noller HF. "Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation." RNA.. 2013 Feb 0; 19(2):158-66. Epub 2012 Dec 17.

11/15/2011
Rudenko MI, Holmes MR, Ermolenko DN, Lunt EJ, Gerhardt S, Noller HF, Deamer DW, Hawkins A, Schmidt H. "Controlled gating and electrical detection of single 50S ribosomal subunits through a solid-state nanopore in a microfluidic chip." Biosensors & bioelectronics.. 2011 Nov 15; 29(1):34-9. Epub 2011 Aug 05.

4/2011
Ermolenko DN, Noller HF. "mRNA translocation occurs during the second step of ribosomal intersubunit rotation." Nature structural & molecular biology.. 2011 Apr 0; 18(4):457-62. Epub 2011 Mar 13.

2/24/2009
Cornish PV, Ermolenko DN, Staple DW, Hoang L, Hickerson RP, Noller HF, Ha T. "Following movement of the L1 stalk between three functional states in single ribosomes." Proceedings of the National Academy of Sciences of the United States of America.. 2009 Feb 24; 106(8):2571-6. Epub 2009 Feb 03.

12/2008
Korostelev A, Ermolenko DN, Noller HF. "Structural dynamics of the ribosome." Current opinion in chemical biology. 2008 Dec 0; 12(6):674-83. Epub 2008 Oct 09.

6/6/2008
Cornish PV, Ermolenko DN, Noller HF, Ha T. "Spontaneous intersubunit rotation in single ribosomes." Molecular cell.. 2008 Jun 6; 30(5):578-88.

9/2007
Spiegel PC, Ermolenko DN, Noller HF. "Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome." RNA.. 2007 Sep 0; 13(9):1473-82. Epub 2007 Jul 13.

7/13/2007
Ermolenko DN, Majumdar ZK, Hickerson RP, Spiegel PC, Clegg RM, Noller HF. "Observation of intersubunit movement of the ribosome in solution using FRET." Journal of molecular biology.. 2007 Jul 13; 370(3):530-40. Epub 2007 Apr 20.

6/2007
Ermolenko DN, Spiegel PC, Majumdar ZK, Hickerson RP, Clegg RM, Noller HF. "The antibiotic viomycin traps the ribosome in an intermediate state of translocation." Nature structural & molecular biology.. 2007 Jun 0; 14(6):493-7. Epub 2007 May 21.

3/2007
Ermolenko DN, Dangi B, Gvritishvili A, Gronenborn AM, Makhatadze GI. "Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences." Biophysical chemistry. 2007 Mar 0; 126(1-3):25-35. Epub 2006 Apr 05.

10/2005
Ermolenko DN, Zherdev AV, Dzantiev BB. "Horseradish peroxidase renaturation is less efficient at lower protein concentrations." Protein and peptide letters.. 2005 Oct 0; 12(7):639-43.

11/2004
Ermolenko DN, Zherdev AV, Dzantiev BB. "Antibodies as specific chaperones." Biochemistry. Biokhimii?a?.. 2004 Nov 0; 69(11):1233-8.

6/2003
Ermolenko DN, Richardson JM, Makhatadze GI. "Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity." Protein science : a publication of the Protein Society.. 2003 Jun 0; 12(6):1169-76.

4/11/2003
Makhatadze GI, Loladze VV, Ermolenko DN, Chen X, Thomas ST. "Contribution of surface salt bridges to protein stability: guidelines for protein engineering." Journal of molecular biology.. 2003 Apr 11; 327(5):1135-48.

2003
Bezsudnova EIu, Zherdev AV, Ermolenko DN, Iakovleva IV, Sviridov VV, Popov VO, Dzantiev BB. "[Peroxidase refolding in the presence of specific antibodies]." Prikladnaia biokhimiia i mikrobiologiia. 2003 39(5):509-17.

11/2002
Ermolenko DN, Makhatadze GI. "Bacterial cold-shock proteins." Cellular and molecular life sciences : CMLS.. 2002 Nov 0; 59(11):1902-13.

9/6/2002
Ermolenko DN, Thomas ST, Aurora R, Gronenborn AM, Makhatadze GI. "Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices." Journal of molecular biology.. 2002 Sep 6; 322(1):123-35.

7/5/2002
Loladze VV, Ermolenko DN, Makhatadze GI. "Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior." Journal of molecular biology.. 2002 Jul 5; 320(2):343-57.

3/8/2002
Ermolenko DN, Zherdev AV, Dzantiev BB, Popov VO. "Antiperoxidase antibodies enhance refolding of horseradish peroxidase." Biochemical and biophysical research communications.. 2002 Mar 8; 291(4):959-65.

7/2001
Loladze VV, Ermolenko DN, Makhatadze GI. "Heat capacity changes upon burial of polar and nonpolar groups in proteins." Protein science : a publication of the Protein Society.. 2001 Jul 0; 10(7):1343-52.