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Computational Tools

GRSS severity score app - https://rprc.urmc.rochester.edu/app/AsPIRES/RSV-GRSS/
Caserta MT, Qiu X, Tessini B, Wang L, Murphy A, Corbett A, Falsey AR, Holden-Wiltse J, Walsh EE. Development of a Global Respiratory Severity Score (GRSS) for Respiratory Syncytial Virus Infection in Infants. J Infect Dis. 2016: PMC388274

High-Dimensional Linear State Space Models for Dynamic Microbial Interaction Networkshttps://github.com/ygu427/HDSSM 
Chen, I., Kelkar, Y., Zhou, J., Gu, Y., Qiu*, X., and Wu*, H. (2017) High-Dimensional Linear State Space Models for Dynamic Microbial Interaction Networks. PloS One, Under revision.

FUNctioNal ELastic-net Regression in time-course Gene Set Enrichment Analysishttps://github.com/yunzhang813/FUNNEL-GSEA-R-Package​
Zhang, Y., Topham, J.D., Thakar*, J., and Qiu*, X. (2017) FUNNEL-GSEA: FUNctioNal ELastic-net Regression in time-course Gene Set Enrichment Analysis. Bioinformatics, 33(13): 1944-1952. PMID: 28334094.

Super-delta: A new approach that combines gene expression data normalization and differential expression test https://github.com/fhlsjs/Super-delta
Liu, Y., Zhang*, J., and Qiu*, X. (2017) Super-delta: A new approach that combines gene expression data normalization and differential expression test. BMC Bioinformatics, Under revision.