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RPRC Publications

2016 Dec
Caserta MT, Qiu X, Tesini B, Wang L, Murphy A, Corbett A, Falsey AR, Holden-Wiltse J, Walsh EE
Development of a Global Respiratory Severity Score (GRSS) for Respiratory Syncytial Virus Infection in Infants.
J Infect Dis. 2016 Dec 23. pii: jiw624. doi: 10.1093/infdis/jiw624. PMID: 28011907

2016 Dec
Caserta MT, Yang H, Gill SR, Holden-Wiltse J, Pryhuber G
Viral Respiratory Infections in Preterm Infants during and after Hospitalization
J Pediatr. 2016 Dec 30. pii: S0022-3476(16)31385-3. doi: 10.1016/j.jpeds.2016.11.077. PMID: 28041669

2016 Dec
Katanic D, Khan A, Thakar J
PathCellNet: Cell-type specific pathogen-response network explorer.
J Immunol Methods. 2016 Dec;439:15-22. doi: 10.1016/j.jim.2016.09.005. PMID: 27659011

2016 Nov
Li H, Qiu X
Moments of Distance from a Vertex to a Uniformly Distributed Random Point within Arbitrary Triangles
Mathematical Problems in Engineering, vol. 2016, Article ID 8371750

2016 Oct
Sun X, Hu F, Wu S, Qiu X, Linel P, Wu H
Controllability and Stability Analysis of Large Transcriptomic Dynamic Systems for Host Response to Influenza Infection in Human
Infectious Disease Modelling, Volume 1, Issue 1, October 2016, Pages 52–70

2016 Sept
Chu CY, Qiu X, Wang L, Bhattacharya S, Lofthus G, Corbett A, Holden-Wiltse J, Grier A, Tesini B, Gill SR, Falsey AR, Caserta MT, Walsh EE, Mariani TJ.
The Healthy Infant Nasal Transcriptome: A Benchmark Study.
Sci Rep. 2016 Sep 23;6:33994. doi: 10.1038/srep33994. PMID: 27658638

2016 Apr
Branche AR, Walsh EE, Jadhav N, Karmally R, Baran A, Peterson DR, Falsey AR.
Provider Decisions to Treat Respiratory Illnesses with Antibiotics: Insights from a Randomized Controlled Trial.
PLoS One. 2016 Apr 4;11(4):e0152986. doi: 10.1371/journal.pone.0152986.. PMID: 27043012

2016 Jan
Burton RL, Geno KA, Saad JS, Nahm MH.
Pneumococcus with the "6E" cps Locus Produces Serotype 6B Capsular Polysaccharide.
J Clin Microbiol. 2016 Apr;54(4):967-71. doi: 10.1128/JCM.03194-15. Epub 2016 Jan 27. PMID: 26818670

2015 Nov
Cattelan N,Dubey P,Arnal L,Yantorno OM,Deora R.
Bordetella biofilms: a lifestyle leading to persistent infections.
Pathog Dis. 2016 Feb;74(1):ftv108. doi: 10.1093/femspd/ftv108. Epub 2015 Nov 19. PMID: 26586694

2015 Oct
Eby JC, Hoffman CL, Gonyar LA, Hewlett EL.
Review of the neutrophil response to Bordetella pertussis infection.
Pathog Dis. 2015 Dec;73(9):ftv081. doi: 10.1093/femspd/ftv081. Epub 2015 Oct 2.PMID: 26432818

2015 Oct
Pryhuber GS
Postnatal Infections and Immunology Affecting Chronic Lung Disease of Prematurity.
Clin Perinatol. 2015 Dec;42(4):697-718. doi: 10.1016/j.clp.2015.08.002. Epub 2015 Oct 1.PMID: 26593074

2015 Aug
Domm W, Misra RS, O'Reilly MA.
Affect of Early Life Oxygen Exposure on Proper Lung Development and Response to Respiratory Viral Infections.
Front Med (Lausanne). 2015 Aug 10;2:55. doi: 10.3389/fmed.2015.00055. eCollection 2015. PMID: 26322310

2015 Aug
Bucukovski J, Latorre-Margalef N, Stallknecht DE, Miller BL
A Multiplex Label-Free Approach to Avian Influenza Surveillance and Serology.
PLoS One. 2015 Aug 4;10(8):e0134484. doi: 10.1371/journal.pone.0134484. eCollection 2015. PMID: 26241048

2015 Aug
Domm W, Misra RS, O'Reilly MA.
Affect of Early-Life Oxygen Exposure on Proper Lung Development and Response to Respiratory Viral Infection.
Front Med (Lausanne). 2015 Aug 10;2:55. doi: 10.3389/fmed.2015.00055. eCollection 2015. PMID: 26322310

2015 Aug
Hsiao C,Liu M,Stanton R,McGee M,Qian Y, Scheuermann RH.
Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure
Cytometry A. 2016 Jan;89(1):71-88. doi: 10.1002/cyto.a.22735. Epub 2015 Aug 14. PMID:26274018

2015 Jul
Scheible KM, Emo J, Yang H, Holden-Wiltse J, Straw A, Huyck H, Misra S, Topham DJ, Ryan RM, Reynolds, AM, Mariani TJ and Pryhuber GS
Developmentally determined reduction in CD31 during gestation is associated with CD8+ T cell effector differentiation in preterm infants.
Clin Immunol. 2015 Jul 29. pii: S1521-6616(15)30007-3. doi: 10.1016/j.clim.2015.07.003. PMID: 26232733

2015 Jul
Qian Y, Kim H, Purawat S, Wang J, Stanton R, Lee A, Xu W, Altintas I, Sinkovits R, Scheuermann RH
FlowGate: Towards Extensible and Scalable Web-based Flow Cytometry Data Analysis
Proceedings of the 4th Annual XSEDE (Extreme Science and Engineering Discovery Environment) Conference, St. Louis, MO, July 26-30, 2015, ACM Press.

2015 Jul
Geno KA, Gilbert GL, Song JY, Skovsted IC, Klugman KP, Jones C, Konradsen HB, Nahm MH.
Pneumococcal Capsules and Their Types: Past, Present, and Future.
Clin Microbiol Rev. 2015 Jul;28(3):871-99. doi: 10.1128/CMR.00024-15. PMID: 26085553

2015 Jul
Leddon SA, Richards KA, Treanor JJ, Sant AJ.
Abundance and specificity of influenza reactive circulating memory Tfh and non-Tfh CD4 T cells in healthy adults.
Immunology. 2015 Sep;146(1):157-62. doi: 10.1111/imm.12491. Epub 2015 Jul 14 PMID: 26094691

2015 May
Misra RS, Shah S, Fowell DJ, Wang H, Scheible K, Misra SK, Huyck H, Wyman CP, Ryan RM, Reynolds AM, Mariani TJ, Katzman PJ, Pryhuber GS.
Preterm cord blood CD4T cells exhibit increased IL-6 production in chorioamnionitis and decreased CD4T cells in bronchopulmonary dysplasia.
Hum Immunol. 2015 May;76(5):329-38. doi: 10.1016/j.humimm.2015.03.007. Epub 2015 Mar 20. PMID: 25797206

2015 May
Terajima M, Co MD, Cruz J, Ennis FA
High Antibody-Dependent Cellular Cytotoxicity Antibody Titers to H5N1 and H7N9 Avian Influenza A Viruses in Healthy US Adults and Older Children.
J Infect Dis. 2015 Mar 20. pii: jiv181. PMID: 25795791

2015 May
Wu H, Miao H, Xue H, Topham DJ, Zand M
Quantifying Immune Response to Influenza Virus Infection via Multivariate Nonlinear ODE Models with Partially Observed State Variables and Time-Varying Parameters.
Stat Biosci. 2015 May 1;7(1):147-166 PMID: 26085850

2015 May
Henkle E, Hedberg K, Schafer S, Novosad AS, Winthrop KL
Population-based incidence of pulmonary nontuberculous mycobacterial disease in Oregon 2007-2012.
Ann Am Thorac Soc. 2015 May;12(5):642-7. doi: 10.1513/AnnalsATS.201412-559OC PMID: 25692495

2015 Apr
Pryhuber GS, Maitre, NL, Ballard RA, Cifelli D, Davis SD, Ellenberg JH, Greenberg JM, Kemp J, Mariani TJ, Panitch H, Ren C, Shaw P, Taussig LM, Hamvas, A
Prematurity and Respiratory Outcomes Program. Prematurity and Respiratory Outcome Program (PROP): Study Protocol of a Prospective Multicenter Study Of Respiratory Outcomes of Preterm Infants in the United States.
BMC Pediatr. 2015 Apr 10;15:37. doi: 10.1186/s12887-015-0346-3 PMID: 25886363

2015 Apr
Halliley JL, Khurana S, Krammer F, Fitzgerald T, Coyle EM, Chung KY, Baker SF, Yang H, Martínez-Sobrido L, Treanor JJ, Subbarao K, Golding H, Topham DJ, Sangster MY
High-Affinity H7 Head and Stalk Domain-Specific Antibody Responses to an Inactivated Influenza H7N7 Vaccine After Priming With Live Attenuated Influenza Vaccine.
J Infect Dis. 2015 Apr 2. pii: jiv210 PMID: 25838266

2015 Apr
Angela R. Branche, Edward E. Walsh, Roberto Vargas, Barbara Hulbert, Maria A. Formica,  Andrea Baran, Derick R. Peterson, and Ann R. Falsey
Serum Prolactonin Measurement and Viral Testing to Guide Antibiotic Use for Respiratory Infections in Hospitalized Adults: A Randomized Controlled Trial.
J Infect Dis. 2015 Apr 24. pii: jiv252 PMID: 25910632

2015 Mar
Misra RS, Shah S, Fowell DJ, Wang H, Scheible K, Misra SK, Huyck H, Wyman CP, Ryan RM, Reynolds AM, Mariani TJ, Katzman PJ, Pryhuber GS
Preterm cord blood CD4(+) T cells exhibit increased IL-6 production in chorioamnionitis and decreased CD4(+) T cells in bronchopulmonary dysplasia.
Hum Immunol. 2015 May;76(5):329-38. doi: 10.1016/j.humimm.2015.03.007. PMID: 25797206

2015 Mar
Maitre NL, Ballard RA, Ellenberg JH, Davis SD, Greenberg JM, Hamvas A, Pryhuber GS
Respiratory consequences of prematurity: evolution of a diagnosis and development of a comprehensive approach.
J Perinatol. 2015 May;35(5):313-21. doi: 10.1038/jp.2015.19. PMID: 25811285

2015 Mar
Lee AJ, Das SR, Wang W, Fitzgerald T, Pickett BE, Aevermann BD, Topham DJ, Falsey AR, Scheuermann RH. Diversifying selection analysis predicts antigenic evolution of 2009 pandemic H1N1 influenza A virus in humans.
J Virol. 2015 May;89(10):5427-40. doi: 10.1128/JVI.03636-14. PMID: 25741011

2014 Dec
Henkle E, Winthrop KL.
Nontuberculous mycobacteria infections in immunosuppressed hosts.
Clin Chest Med. 2015 Mar;36(1):91-9. doi: 10.1016/j.ccm.2014.11.002.PMID: 25676522

2014 Dec
Richards KA, Nayak J, Chaves FA, DiPiazza A, Knowlden ZA, Alam S, Treanor JJ, Sant AJ
Seasonal Influenza Can Poise Hosts for CD4 T-Cell Immunity to H7N9 Avian Influenza.
J Infect Dis. 2015 Jul 1;212(1):86-94. doi: 10.1093/infdis/jiu662. PMID: 25492919

2014 Nov
Misra RS.
A Review of the CD4+ T Cell Contribution to Lung Infection, Inflammation and Repair with a Focus on Wheeze and Asthma in the Pediatric Population.
EC Microbiol. 2014;1(1):4-14. PMID:26280024

2014 Jul 23
Branche AR, Walsh EE, Formica MA, Falsey AR.
Detection of Respiratory Viruses in Sputum from Adults Using Automated Multiplex Polymerase Chain Reaction (PCR).
J Clin Microbiol. 2014 Oct;52(10):3590-6. doi: 10.1128/JCM.01523-14. PMID: 25056335

2013 Oct 30
Brady A, Spencer B, Falsey AR, Nahm MH.
Blood collection tubes influence serum ficolin-5 1 and ficolin-2 levels.
Clin Vaccine Immunol. 2014 Jan;21(1):51-5. doi: 10.1128/CVI.00607-13.PMID:24173025

2013 Oct 23
Alam S, Knowlden ZA, Sangster MY, Sant AJ
CD4 T cell help is limiting and selective during the primary B cell response to influenza virus infection.
J Virol. 2014 Jan;88(1):314-24. doi: 10.1128/JVI.02077-13. PMID: 24155379

2013 Jul 15
Tung J, Sant AJ
Orchestration of CD4 T cell epitope preferences after multipeptide immunization.
J Immunol. 2013 Jul 15;191(2):764-72. doi: 10.4049/jimmunol.1300312. PMID:23772029

2012 Oct 15
Leddon SA, Sant AJ.
The Peptide specificity of the endogenous T follicular helper cell repertoire generated after protein immunization.
PLoS One. 7(10):e46952. PMCID: PMC3471970

Related Publications

2012 Aug 15
Bhattacharya S, Go D, Krenitsky DL, Huyck HL, Solleti SK, Lunger VA, Metlay L, Srisuma S, Wert SE, Mariani TJ, Pryhuber GS.
Genome-wide transcriptional profiling reveals connective tissue mast cell accumulation in bronchopulmonary dysplasia.
Am J Respir Crit Care Med. 186(4):349-58. PMCID: PMC3443810

2012 Jul 30
Sant AJ and McMichael A.
Revealing the role of CD4 T cells in anti-viral immunity.
J Exp Med. 209:1391. PMCID: PMC3420330

2012 Jan
Falsey AR, Formica MA, Walsh EE.
Yield of Sputum for Viral Detection by Reverse Transcriptase by PCR in Adults Hospitalized with Respiratory Illness.
J Clin Micro. 60 (1):21. PMCID: PMC3256730

2010 Jan 1
Kho AT, Bhattacharya S, Tantisira KG, Carey VJ, Gaedigk R, Leeder JS, Kohane IS, Weiss ST, Mariani TJ.
Transcriptomic analysis of human lung development.
Am J Respir Crit Care Med. 181(1):54-63. PMCID: PMC2797628

2008 Dec 8
Walsh EE, Petersen DR, Falsey AR.
Another Piece of the Puzzle: Human Metapneumovirus Infection in Adults.
Arch Int Med. 168:2489-96. PMCID: PMC2783624

2007 Feb 26
Falsey AR, Murata Y, Walsh EE.
Impact of Rapid Diagnosis on Management of Adults Hospitalized with Influenza.
Arch Internal Med. 167:354-60. PMID:17242309

2006 Mar 15
Falsey AR, Formica MA, Hennessey PA, Criddle MC, Sullender WM, Walsh EE.
Detection of Respiratory Syncytial Virus in Adults with Chronic Obstructive Pulmonary Disease.
Am J Respir Crit Care Med. 173(6):639-43. PMCID: PMC2662947

2005 Apr 28
Falsey AR, Hennessey PA, Formica MA, Cox C, Walsh EE.
Respiratory Syncytial Virus in Elderly and High-risk Adults.
NEJM. 352(17):1749-59. PMID:15858184. PMID:15216475

2004 Jul 15
Walsh E, Falsey AR.
Humoral and Mucosal Immunity in Protection from Natural Respiratory Syncytial Virus Infection in Adults.
J Infect Dis. 190(2):373-8. PMID:15216475

2003 Sep
Falsey AR, Formica MA, Treanor JJ, Walsh EE.
Comparison of quantitative reverse transcription-PCR to viral culture for assessment of respiratory syncytial virus shedding.
J Clinic Microbiol. 41(9):4160-65. PMCID: PMC193781