Principal Investigator

Dmitri N. Ermolenko, Ph.D. University of Rochester work Rochester NY Dmitri_Ermolenko@urmc.rochester.edu

Recent Publications

The following list was auto-generated 1 week ago.

1. Ermolenko DN
2. Cornish PV
3. Ha T
4. Noller HF
(2013 Feb 01). Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation. RNA. 19, 158-66.
1. Rudenko MI
2. Holmes MR
3. Ermolenko DN
4. Lunt EJ
5. Gerhardt S
6. Noller HF
7. Deamer DW
8. Hawkins A
9. Schmidt H
(2011 Nov 15). Controlled gating and electrical detection of single 50S ribosomal subunits through a solid-state nanopore in a microfluidic chip. Biosens Bioelectron. 29, 34-9.
1. Ermolenko DN
2. Noller HF
(2011 Apr 01). mRNA translocation occurs during the second step of ribosomal intersubunit rotation. Nat Struct Mol Biol. 18, 457-62.
1. Cornish PV
2. Ermolenko DN
3. Staple DW
4. Hoang L
5. Hickerson RP
6. Noller HF
7. Ha T
(2009 Feb 24). Following movement of the L1 stalk between three functional states in single ribosomes. Proc Natl Acad Sci U S A. 106, 2571-6.
1. Korostelev A
2. Ermolenko DN
3. Noller HF
(2008 Dec 01). Structural dynamics of the ribosome. Curr Opin Chem Biol. 12, 674-83.
1. Cornish PV
2. Ermolenko DN
3. Noller HF
4. Ha T
(2008 Jun 06). Spontaneous intersubunit rotation in single ribosomes. Mol Cell. 30, 578-88.
1. Spiegel PC
2. Ermolenko DN
3. Noller HF
(2007 Sep 01). Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome. RNA. 13, 1473-82.
1. Ermolenko DN
2. Majumdar ZK
3. Hickerson RP
4. Spiegel PC
5. Clegg RM
6. Noller HF
(2007 Jul 13). Observation of intersubunit movement of the ribosome in solution using FRET. J Mol Biol. 370, 530-40.
1. Ermolenko DN
2. Spiegel PC
3. Majumdar ZK
4. Hickerson RP
5. Clegg RM
6. Noller HF
(2007 Jun 01). The antibiotic viomycin traps the ribosome in an intermediate state of translocation. Nat Struct Mol Biol. 14, 493-7.
1. Ermolenko DN
2. Dangi B
3. Gvritishvili A
4. Gronenborn AM
5. Makhatadze GI
(2007 Mar 01). Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences. Biophys Chem. 126, 25-35.
1. Ermolenko DN
2. Zherdev AV
3. Dzantiev BB
(2005 Oct 01). Horseradish peroxidase renaturation is less efficient at lower protein concentrations. Protein Pept Lett. 12, 639-43.
1. Ermolenko DN
2. Zherdev AV
3. Dzantiev BB
(2004 Nov 01). Antibodies as specific chaperones. Biochemistry (Mosc). 69, 1233-8.
1. Bezsudnova EIu
2. Zherdev AV
3. Ermolenko DN
4. Iakovleva IV
5. Sviridov VV
6. Popov VO
7. Dzantiev BB
(2003 Nov 03). [Peroxidase refolding in the presence of specific antibodies]. Prikl Biokhim Mikrobiol. 39, 509-17.
1. Ermolenko DN
2. Richardson JM
3. Makhatadze GI
(2003 Jun 01). Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity. Protein Sci. 12, 1169-76.
1. Makhatadze GI
2. Loladze VV
3. Ermolenko DN
4. Chen X
5. Thomas ST
(2003 Apr 11). Contribution of surface salt bridges to protein stability: guidelines for protein engineering. J Mol Biol. 327, 1135-48.
1. Ermolenko DN
2. Makhatadze GI
(2002 Nov 01). Bacterial cold-shock proteins. Cell Mol Life Sci. 59, 1902-13.
1. Ermolenko DN
2. Thomas ST
3. Aurora R
4. Gronenborn AM
5. Makhatadze GI
(2002 Sep 06). Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices. J Mol Biol. 322, 123-35.
1. Loladze VV
2. Ermolenko DN
3. Makhatadze GI
(2002 Jul 05). Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior. J Mol Biol. 320, 343-57.
1. Ermolenko DN
2. Zherdev AV
3. Dzantiev BB
4. Popov VO
(2002 Mar 08). Antiperoxidase antibodies enhance refolding of horseradish peroxidase. Biochem Biophys Res Commun. 291, 959-65.
1. Loladze VV
2. Ermolenko DN
3. Makhatadze GI
(2001 Jul 01). Heat capacity changes upon burial of polar and nonpolar groups in proteins. Protein Sci. 10, 1343-52.