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Recent Publications

The following list was auto-generated 1 week ago.

• 1. Gloor JW
  2. Balakrishnan L
  3. Campbell JL
  4. Bambara RA
  (2012 May 07). Biochemical analyses indicate that binding and cleavage specificities define the ordered processing of human Okazaki fragments by Dna2 and FEN1. Nucleic Acids Res. In press.
• 1. Huang C
  2. Wu G
  3. Yu YT
  (2012 Apr 01). Inducing nonsense suppression by targeted pseudouridylation. Nat Protoc. 7, 789-800.
• 1. Finn R
  2. Kovács AD
  3. Pearce DA
  (2012 Feb 01). Altered glutamate receptor function in the cerebellum of the Ppt1(-/-) mouse, a murine model of infantile neuronal ceroid lipofuscinosis. J Neurosci Res. 90, 367-75.
• 1. McArdle J
  2. Moorman NJ
  3. Munger J
  (2012 Jan 01). HCMV targets the metabolic stress response through activation of AMPK whose activity is important for viral replication. PLoS Pathog. 8, e1002502.
• 1. Wu G
  2. Yu AT
  3. Kantartzis A
  4. Yu YT
  (2011 Sep 29). Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation. Wiley Interdiscip Rev RNA. 2, 571-81.
• 1. Shen W
  2. Gorelick RJ
  3. Bambara RA
  (2011 Aug 26). HIV-1 nucleocapsid protein increases strand transfer recombination by promoting dimeric G-quartet formation. J Biol Chem. 286, 29838-47.
• 1. Jagannathan I
  2. Pepenella S
  3. Hayes JJ
  (2011 May 20). Activity of FEN1 endonuclease on nucleosome substrates is dependent upon DNA sequence but not flap orientation. J Biol Chem. 286, 17521-9.
• 1. Fromm G
  2. Cadiz-Rivera B
  3. de Vries C
  4. Getman M
  5. McGrath KE
  6. Kingsley PD
  7. Fields J
  8. Fiering S
  9. Bulger M
  (2011 May 12). An embryonic stage-specific enhancer within the murine β-globin locus mediates domain-wide histone hyperacetylation. Blood. 117, 5207-14.
• 1. Finn R
  2. Kovács AD
  3. Pearce DA
  (2011 May 01). Altered sensitivity of cerebellar granule cells to glutamate receptor overactivation in the Cln3(Δex7/8)-knock-in mouse model of juvenile neuronal ceroid lipofuscinosis. Neurochem Int. 58, 648-55.
• 1. Gong C
  2. Maquat LE
  (2011 Feb 10). lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements. Nature. 470, 284-8.
• 1. Liu N
  2. Balliano A
  3. Hayes JJ
  (2011 Jan 24). Mechanism(s) of SWI/SNF-induced nucleosome mobilization. Chembiochem. 12, 196-204.
• 1. Wu G
  2. Xiao M
  3. Yang C
  4. Yu YT
  (2011 Jan 05). U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. EMBO J. 30, 79-89.
• 1. McArdle J
  2. Schafer XL
  3. Munger J
  (2011 Jan 01). Inhibition of calmodulin-dependent kinase kinase blocks human cytomegalovirus-induced glycolytic activation and severely attenuates production of viral progeny. J Virol. 85, 705-14.
• 1. Letzring DP
  2. Dean KM
  3. Grayhack EJ
  (2010 Dec 01). Control of translation efficiency in yeast by codon-anticodon interactions. RNA. 16, 2516-28.
• 1. Gloor JW
  2. Balakrishnan L
  3. Bambara RA
  (2010 Nov 05). Flap endonuclease 1 mechanism analysis indicates flap base binding prior to threading. J Biol Chem. 285, 34922-31.
• 1. Finn R
  2. Kovács AD
  3. Pearce DA
  (2010 Sep 01). Altered sensitivity to excitotoxic cell death and glutamate receptor expression between two commonly studied mouse strains. J Neurosci Res. 88, 2648-60.
• 1. Balakrishnan L
  2. Gloor JW
  3. Bambara RA
  (2010 Jul 01). Reconstitution of eukaryotic lagging strand DNA replication. Methods. 51, 347-57.
• 1. Karijolich J
  2. Kantartzis A
  3. Yu YT
  (2010 Jan 01). Quantitative analysis of RNA modifications. Methods Mol Biol. 629, 21-32.
• 1. Karijolich J
  2. Kantartzis A
  3. Yu YT
  (2010 Jan 01). RNA modifications: a mechanism that modulates gene expression. Methods Mol Biol. 629, 1-19.
• 1. Shen W
  2. Gao L
  3. Balakrishnan M
  4. Bambara RA
  (2009 Dec 04). A recombination hot spot in HIV-1 contains guanosine runs that can form a G-quartet structure and promote strand transfer in vitro. J Biol Chem. 284, 33883-93.
• 1. Maquat LE
  2. Gong C
  (2009 Dec 01). Gene expression networks: competing mRNA decay pathways in mammalian cells. Biochem Soc Trans. 37, 1287-92.
• 1. Seluanov A
  2. Hine C
  3. Azpurua J
  4. Feigenson M
  5. Bozzella M
  6. Mao Z
  7. Catania KC
  8. Gorbunova V
  (2009 Nov 17). Hypersensitivity to contact inhibition provides a clue to cancer resistance of naked mole-rat. Proc Natl Acad Sci U S A. 106, 19352-7.
• 1. Lu ZJ
  2. Gloor JW
  3. Mathews DH
  (2009 Oct 01). Improved RNA secondary structure prediction by maximizing expected pair accuracy. RNA. 15, 1805-13.
• 1. Gong C
  2. Kim YK
  3. Woeller CF
  4. Tang Y
  5. Maquat LE
  (2009 Jan 01). SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs. Genes Dev. 23, 54-66.
• 1. Stewart JA
  2. Miller AS
  3. Campbell JL
  4. Bambara RA
  (2008 Nov 14). Dynamic removal of replication protein A by Dna2 facilitates primer cleavage during Okazaki fragment processing in Saccharomyces cerevisiae. J Biol Chem. 283, 31356-65.
• 1. Wakabayashi H
  2. Varfaj F
  3. Deangelis J
  4. Fay PJ
  (2008 Oct 01). Generation of enhanced stability factor VIII variants by replacement of charged residues at the A2 domain interface. Blood. 112, 2761-9.