Benjamin L. Miller, Ph.D.

Benjamin L. Miller, Ph.D.

Contact Information

University of Rochester Medical Center
School of Medicine and Dentistry
601 Elmwood Ave, Box 697
Rochester, NY 14642

Office: (585) 275-9805
Lab: (585) 273-1566
Administrative: (585) 275-3871
Fax: (585) 273-1346

Research Bio

Research in the Miller group focuses on two fundamental areas: the control of biomolecular interactions through the synthesis of new small-molecule probes, and the observation of biomolecular interactions through the development of novel optical sensing technologies. In the area of control, we are particularly interested in the sequence-selective recognition of RNA. New RNA sequences with important functions in basic biology and human health and disease are being discovered at an ever-increasing rate, and yet our ability to target these sequences specifically is still at a rudimentary stage. To address this gap, we are applying techniques of molecular design and a novel combinatorial method of small-molecule evolution called Dynamic Combinatorial Chemistry, which allows us to rapidly "prototype"

sequence-selective RNA binding molecules. Thus far we have used this methodology to RNA targets important in Myotonic Dystrophy and HIV. Protein-targeted small-molecule discovery projects are also of interest, and current projects include the mechanism of tight junction formation and the transport of beta-amyloid across the blood-brain barrier. To the end of achieving better methods of observing biomolecular interactions, our group has a longstanding program in the use of the optical properties of nanostructured materials as the basis for new biosensors and diagnostic tools. Two examples of current efforts include Arrayed Imaging Reflectometry (AIR) and sensors based on two-dimensional photonic crystals (2-D PhC). AIR relies on the creation of a near-perfect antireflection coating on the surface of a silicon chip; binding of a biomolecular target destroys this antireflective condition and is visible by a change in reflected light. This allows for highly multiplexed (10's to 1000's of targets) and quantitative detection. Photonic crystal sensors, on the other hand, offer the possibility of ultrasensitive detection: for example, a major long-term goal of our work is the production of sensors that can effectively detect one virus in a blood sample.

Awards & Honors

Rochester Business Journal Health Care Achievement Award | Rochester Business Journal 2009
Camille Dreyfus Teacher-Scholar Award | Dreyfus Foundation 2001 - 2006
Research Corporation Research Innovation Award | Research Corporation 1998 - 2000
NIH Postdoctoral Fellowship | NIH | Harvard University 1994 - 1996
W. R. Grace Graduate Fellow Award | W. R. Grace Corporation | Stanford University 1991 - 1993

Recent Journal Articles

Showing the 5 most recent journal articles. 88 available »

2013 Jun 15
Pal S, Yadav AR, Lifson MA, Baker JE, Fauchet PM, Miller BL. "Selective virus detection in complex sample matrices with photonic crystal optical cavities." Biosensors & bioelectronics. 2013 Jun 15; 44:229-34. Epub 2013 Jan 15.
2012 Nov 6
Pal S, Fauchet PM, Miller BL. "1-D and 2-D photonic crystals as optical methods for amplifying biomolecular recognition." Analytical chemistry. 2012 Nov 6; 84(21):8900-8. Epub 2012 Sep 21.
2012 Jul
Ofori LO, Hoskins J, Nakamori M, Thornton CA, Miller BL. "From dynamic combinatorial 'hit' to lead: in vitro and in vivo activity of compounds targeting the pathogenic RNAs that cause myotonic dystrophy." Nucleic acids research. 2012 Jul 0; 40(13):6380-90. Epub 2012 Apr 06.
2012 Apr 2
Deane R, Singh I, Sagare AP, Bell RD, Ross NT, Larue B, Love R, Perry S, Paquette N, Deane RJ, Meenakshisundaram T, Zarcone T, Fritz G, Friedman AE, Miller BL, Zlokovic BV. "A multimodal RAGE-specific inhibitor reduces amyloid ?-mediated brain disorder in a mouse model of Alzheimer disease." The Journal of clinical investigation. 2012 Apr 2; 122(4):1377-92. Epub 2012 Mar 12.
2012 Mar 21
Peng HI, Strohsahl CM, Miller BL. "Microfluidic nanoplasmonic-enabled device for multiplex DNA detection." Lab on a chip. 2012 Mar 21; 12(6):1089-93. Epub 2012 Feb 02.

Current Appointments

Professor - Department of Dermatology (SMD) - Primary
Professor - Department of Biochemistry and Biophysics (SMD)

Education

PhD | Organic Chemistry | Stanford University1994
BS, Chemistry; B.A. Mathematics; B.A. German | Miami University1988

Post-Doctoral Training & Residency

NIH Postdoctoral Fellow, Department of Chemistry, Harvard University: Professor Stuart L. Schreiber, advisor. Design, synthesis, and evaluation of structure-based, nonpeptide combinatorial libraries for binding to Src homology 3 (SH3) domains. 1996
Head Teaching Assistant, Advanced Organic Chemistry, Paul A. Wender, Professor. 1993
Head Teaching Assistant, Advanced Organic Chemistry, Paul A. Wender, Professor. 1993
Research Assistant, Department of Chemistry, Stanford University: Professor Paul A. Wender, Advisor. Synthesis of calphostin C and related perylenequinone natural products; molecular modeling of the interactions of dynemicin A with DNA; identification, synthesis, overexpression, analysis, and tertiary structure determination of phorbol ester-binding polypeptides related to protein kinase C. 1994
Teaching Assistant, Department of Chemistry, Stanford University. Undergraduate Organic Synthesis Laboratory and Lecture. 1989
Research Intern, Department of Chemistry, The Ohio State University: Professor Leo A. Paquette, Advisor. Synthesis of transition metal coordination complexes of spirocyclic isodicyclopentadienes. 1987
Research Assistant, Department of Chemistry, Miami University: Professor James Hershberger, advisor. Synthesis, analysis, and applications of polystyrene-bound trialkyltin hydrides. 1988