Dmitri N. Ermolenko, Ph.D.

Dmitri N. Ermolenko, Ph.D.

Contact Information

University of Rochester Medical Center
School of Medicine and Dentistry
601 Elmwood Ave, Box 712
Rochester, NY 14642

Fax: (585) 271-2683
Office: (585) 275-3704

Journal Articles

Showing all 24 journal articles available.

2014 Nov 15
Salsi E, Farah E, Netter Z, Dann J, Ermolenko DN. "Movement of Elongation Factor G between Compact and Extended Conformations." Journal of molecular biology. 2014 Nov 15; Epub 2014 Nov 15.
2014 Oct 21
Salsi E, Farah E, Dann J, Ermolenko DN. "Following movement of domain IV of elongation factor G during ribosomal translocation." Proceedings of the National Academy of Sciences of the United States of America. 2014 Oct 21; 111(42):15060-5. Epub 2014 Oct 06.
2014 Sep 1
Kurosaki T, Li W, Hoque M, Popp MW, Ermolenko DN, Tian B, Maquat LE. "A post-translational regulatory switch on UPF1 controls targeted mRNA degradation." Genes & development. 2014 Sep 1; 28(17):1900-16.
2013 Jul 23
Svidritskiy E, Ling C, Ermolenko DN, Korostelev AA. "Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome." Proceedings of the National Academy of Sciences of the United States of America. 2013 Jul 23; 110(30):12283-8. Epub 2013 Jul 03.
2013 Feb
Ermolenko DN, Cornish PV, Ha T, Noller HF. "Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation." RNA. 2013 Feb; 19(2):158-66. Epub 2012 Dec 17.
2013
Brilot AF, Korostelev AA, Ermolenko DN, Grigorieff N. "Structure of the ribosome with elongation factor G trapped in the pretranslocation state." Proceedings of the National Academy of Sciences of the United States of America. 2013 110(52):20994-9. Epub 2013 Dec 09.
2011 Apr
Ermolenko DN, Noller HF. "mRNA translocation occurs during the second step of ribosomal intersubunit rotation." Nature structural & molecular biology. 2011 Apr; 18(4):457-62. Epub 2011 Mar 13.
2009 Feb 24
Cornish PV, Ermolenko DN, Staple DW, Hoang L, Hickerson RP, Noller HF, Ha T. "Following movement of the L1 stalk between three functional states in single ribosomes." Proceedings of the National Academy of Sciences of the United States of America. 2009 Feb 24; 106(8):2571-6. Epub 2009 Feb 03.
2008 Jun 6
Cornish PV, Ermolenko DN, Noller HF, Ha T. "Spontaneous intersubunit rotation in single ribosomes." Molecular cell. 2008 Jun 6; 30(5):578-88.
2008
Korostelev A, Ermolenko DN, Noller HF. "Structural dynamics of the ribosome." Current opinion in chemical biology. 2008 12(6):674-83. Epub 2008 Oct 09.
2007 Sep
Spiegel PC, Ermolenko DN, Noller HF. "Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome." RNA. 2007 Sep; 13(9):1473-82. Epub 2007 Jul 13.
2007 Jul 13
Ermolenko DN, Majumdar ZK, Hickerson RP, Spiegel PC, Clegg RM, Noller HF. "Observation of intersubunit movement of the ribosome in solution using FRET." Journal of molecular biology. 2007 Jul 13; 370(3):530-40. Epub 2007 Apr 20.
2007 Jun
Ermolenko DN, Spiegel PC, Majumdar ZK, Hickerson RP, Clegg RM, Noller HF. "The antibiotic viomycin traps the ribosome in an intermediate state of translocation." Nature structural & molecular biology. 2007 Jun; 14(6):493-7. Epub 2007 May 21.
2007 Mar
Ermolenko DN, Dangi B, Gvritishvili A, Gronenborn AM, Makhatadze GI. "Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences." Biophysical chemistry. 2007 Mar; 126(1-3):25-35. Epub 2006 Apr 05.
2005 Oct
Ermolenko DN, Zherdev AV, Dzantiev BB. "Horseradish peroxidase renaturation is less efficient at lower protein concentrations." Protein and peptide letters. 2005 Oct; 12(7):639-43.
2004 Nov
Ermolenko DN, Zherdev AV, Dzantiev BB. "Antibodies as specific chaperones." Biochemistry. Biokhimii?a. 2004 Nov; 69(11):1233-8.
2003 Jun
Ermolenko DN, Richardson JM, Makhatadze GI. "Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity." Protein science : a publication of the Protein Society. 2003 Jun; 12(6):1169-76.
2003 Apr 11
Makhatadze GI, Loladze VV, Ermolenko DN, Chen X, Thomas ST. "Contribution of surface salt bridges to protein stability: guidelines for protein engineering." Journal of molecular biology. 2003 Apr 11; 327(5):1135-48.
2003
Bezsudnova EIu, Zherdev AV, Ermolenko DN, Iakovleva IV, Sviridov VV, Popov VO, Dzantiev BB. "[Peroxidase refolding in the presence of specific antibodies]." Prikladnaia biokhimiia i mikrobiologiia. 2003 39(5):509-17.
2002 Nov
Ermolenko DN, Makhatadze GI. "Bacterial cold-shock proteins." Cellular and molecular life sciences : CMLS. 2002 Nov; 59(11):1902-13.
2002 Sep 6
Ermolenko DN, Thomas ST, Aurora R, Gronenborn AM, Makhatadze GI. "Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices." Journal of molecular biology. 2002 Sep 6; 322(1):123-35.
2002 Jul 5
Loladze VV, Ermolenko DN, Makhatadze GI. "Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior." Journal of molecular biology. 2002 Jul 5; 320(2):343-57.
2002 Mar 8
Ermolenko DN, Zherdev AV, Dzantiev BB, Popov VO. "Antiperoxidase antibodies enhance refolding of horseradish peroxidase." Biochemical and biophysical research communications. 2002 Mar 8; 291(4):959-65.
2001 Jul
Loladze VV, Ermolenko DN, Makhatadze GI. "Heat capacity changes upon burial of polar and nonpolar groups in proteins." Protein science : a publication of the Protein Society. 2001 Jul; 10(7):1343-52.