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Seong-Hwan Jun, Ph.D.

Contact

Call Center (585) 276-3000

About Me

Faculty Appointments

Assistant Professor - Department of Biostatistics and Computational Biology (SMD)

Publications

Journal Articles

miRglmm: a generalized linear mixed model of isomiR-level counts improves estimation of miRNA-level differential expression and uncovers variable differential expression between isomiRs.

Baran AM, Patil AH, Aparicio-Puerta E, Jun SH, Halushka MK, McCall MN

Genome biology.. 2025 April 2226 (1):102. Epub 04/22/2025.

ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets.

Zheng Y, Caron DP, Kim JY, Jun SH, Tian Y, Florian M, Stuart KD, Sims PA, Gottardo R

Research square.. 2024 July 8 Epub 07/08/2024.

Scuphr: A probabilistic framework for cell lineage tree reconstruction.

Koptagel H, Jun SH, Hård J, Lagergren J

PLoS computational biology.. 2024 May 20 (5):e1012094. Epub 05/09/2024.

Distinct immune responses associated with vaccination status and protection outcomes after malaria challenge.

Oyong DA, Duffy FJ, Neal ML, Du Y, Carnes J, Schwedhelm KV, Hertoghs N, Jun SH, Miller H, Aitchison JD, De Rosa SC, Newell EW, McElrath MJ, McDermott SM, Stuart KD

PLoS pathogens.. 2023 May 19 (5):e1011051. Epub 05/17/2023.

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.

Jun SH, Toosi H, Mold J, Engblom C, Chen X, O'Flanagan C, Hagemann-Jensen M, Sandberg R, Aparicio S, Hartman J, Roth A, Lagergren J

Nature communications.. 2023 February 2214 (1):982. Epub 02/22/2023.

Infer- ring tumor progression in large datasets.

Mohaghegh Neyshabouri, M; Jun, S-H; Lagergren, J.

PLoS Computational Biology. 2020; 16(10): e1008183.