Xing Qiu, Ph.D.

Xing Qiu, Ph.D.

Contact Information

University of Rochester Medical Center
School of Medicine and Dentistry
601 Elmwood Ave, Box 630
Rochester, NY 14642

Journal Articles

Showing all 43 journal articles available.

2016 Nov
Maceroli M, Nikkel LE, Mahmood B, Ketz JP, Qiu X, Ciminelli J, Messing S, Elfar JC. "Total Hip Arthroplasty for Femoral Neck Fractures: Improved Outcomes With Higher Hospital Volumes." Journal of orthopaedic trauma. 2016 Nov; 30(11):597-604.
2016 Sep 23
Chu CY, Qiu X, Wang L, Bhattacharya S, Lofthus G, Corbett A, Holden-Wiltse J, Grier A, Tesini B, Gill SR, Falsey AR, Caserta MT, Walsh EE, Mariani TJ. "The Healthy Infant Nasal Transcriptome: A Benchmark Study." Scientific reports. 2016 Sep 23; 6:33994. Epub 2016 Sep 23.
2016 Mar 21
Liu B, Qiu X, Zhu T, Tian W, Hu R, Ekholm S, Schifitto G, Zhong J. "Improved spatial regression analysis of diffusion tensor imaging for lesion detection during longitudinal progression of multiple sclerosis in individual subjects." Physics in medicine and biology. 2016 Mar 21; 61(6):2497-513. Epub 2016 Mar 07.
2016 Feb 5
Shen S, Li J, Hilchey S, Shen X, Tu C, Qiu X, Ng A, Ghaemmaghami S, Wu H, ZAnd M, Qu J. "Ion-Current-Based Temporal Proteomic Profiling of Influenza-A-Virus-Infected Mouse Lungs Revealed Underlying Mechanisms of Altered Integrity of the Lung Microvascular Barrier." Journal of proteome research. 2016 Feb 5; 15(2):540-53. Epub 2016 Jan 08.
Liu B, Qiu X, Zhu T, Tian W, Hu R, Ekholm S, Schifitto G, Zhong J. "Spatial regression analysis of serial DTI for subject-specific longitudinal changes of neurodegenerative disease." NeuroImage. Clinical. 2016 11:291-301. Epub 2016 Feb 21.
2015 Sep
Barrett ES, Velez M, Qiu X, Chen SR. "Reducing Prenatal Phthalate Exposure Through Maternal Dietary Changes: Results from a Pilot Study." Maternal and child health journal. 2015 Sep; 19(9):1936-42.
Kiebala M, Singh MV, Piepenbrink MS, Qiu X, Kobie JJ, Maggirwar SB. "Platelet Activation in Human Immunodeficiency Virus Type-1 Patients Is Not Altered with Cocaine Abuse." PloS one. 2015 10(6):e0130061. Epub 2015 Jun 15.
Qiu X, Wu S, Hilchey SP, Thakar J, Liu ZP, Welle SL, Henn AD, Wu H, Zand MS. "Diversity in Compartmental Dynamics of Gene Regulatory Networks: The Immune Response in Primary Influenza A Infection in Mice." PloS one. 2015 10(9):e0138110. Epub 2015 Sep 28.
2014 Sep 1
Smolock EM, Burke RM, Wang C, Thomas T, Batchu SN, Qiu X, Zettel M, Fujiwara K, Berk BC, Korshunov VA. "Intima modifier locus 2 controls endothelial cell activation and vascular permeability." Physiological genomics. 2014 Sep 1; 46(17):624-33. Epub 2014 Jul 01.
2014 Jul 8
Heo KS, Cushman HJ, Akaike M, Woo CH, Wang X, Qiu X, Fujiwara K, Abe J. "ERK5 activation in macrophages promotes efferocytosis and inhibits atherosclerosis." Circulation. 2014 Jul 8; 130(2):180-91. Epub 2014 Apr 28.
Wu S, Liu ZP, Qiu X, Wu H. "Modeling genome-wide dynamic regulatory network in mouse lungs with influenza infection using high-dimensional ordinary differential equations." PloS one. 2014 9(5):e95276. Epub 2014 May 06.
2013 Dec
Zhu T, Hu R, Tian W, Ekholm S, Schifitto G, Qiu X, Zhong J. "SPatial REgression Analysis of Diffusion tensor imaging (SPREAD) for longitudinal progression of neurodegenerative disease in individual subjects." Magnetic resonance imaging. 2013 Dec; 31(10):1657-67. Epub 2013 Oct 05.
2013 Apr 11
Qiu X, Wu H, Hu R. "The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis." BMC bioinformatics. 2013 Apr 11; 14:124. Epub 2013 Apr 11.
38. Hu, R.; Qiu, X. "A Geometric Illustration of Differential Gene Association Analysis for Microarray Data". Journal of Unified Statistical Techniques. 2013; 1(1).
Qiu X, Klebanov L. "Gene selection with the ?-sequence method." Methods in molecular biology. 2013 972:57-71.
Henn AD, Wu S, Qiu X, Ruda M, Stover M, Yang H, Liu Z, Welle SL, Holden-Wiltse J, Wu H, Zand MS. "High-resolution temporal response patterns to influenza vaccine reveal a distinct human plasma cell gene signature." Scientific reports. 2013 3:2327.
2012 Nov 13
Smolock EM, Korshunov VA, Glazko G, Qiu X, Gerloff J, Berk B. "Ribosomal protein L17, RpL17, is an inhibitor of vascular smooth muscle growth and carotid intima formation." Circulation. 2012 Nov 13; 126(20):2418-27. Epub 2012 Oct 12.
2012 Jul
Liu X, Tian W, Qiu X, Li J, Thomson S, Li L, Wang HZ. "Correlation analysis of quantitative diffusion parameters in ipsilateral cerebral peduncle during Wallerian degeneration with motor function outcome after cerebral ischemic stroke." Journal of neuroimaging : official journal of the American Society of Neuroimaging. 2012 Jul; 22(3):255-60. Epub 2011 Jun 23.
2012 Feb
Liu X, Tian W, Li L, Kolar B, Qiu X, Chen F, Dogra VS. "Hyperintensity on diffusion weighted image along ipsilateral cortical spinal tract after cerebral ischemic stroke: a diffusion tensor analysis." European journal of radiology. 2012 Feb; 81(2):292-7. Epub 2011 Jan 17.
Henn AD, Laski M, Yang H, Welle S, Qiu X, Miao H, Barry CT, Wu H, Zand MS. "Functionally Distinct Subpopulations of CpG-Activated Memory B Cells." Scientific reports. 2012 2:345. Epub 2012 Mar 30.
2011 Nov
Groom L, Muldoon SM, Tang ZZ, Brandom BW, Bayarsaikhan M, Bina S, Lee HS, Qiu X, Sambuughin N, Dirksen RT. "Identical de novo mutation in the type 1 ryanodine receptor gene associated with fatal, stress-induced malignant hyperthermia in two unrelated families." Anesthesiology. 2011 Nov; 115(5):938-45.
2011 Sep 21
Needham M, Hu R, Dwarkadas S, Qiu X. "Hierarchical parallelization of gene differential association analysis." BMC bioinformatics. 2011 Sep 21; 12:374. Epub 2011 Sep 21.
2011 Jul
Hu Y, Bandla S, Godfrey TE, Tan D, Luketich JD, Pennathur A, Qiu X, Hicks DG, Peters JH, Zhou Z. "HER2 amplification, overexpression and score criteria in esophageal adenocarcinoma." Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2011 Jul; 24(7):899-907. Epub 2011 Apr 01.
2011 Jun 1
Zhu T, Hu R, Qiu X, Taylor M, Tso Y, Yiannoutsos C, Navia B, Mori S, Ekholm S, Schifitto G, Zhong J. "Quantification of accuracy and precision of multi-center DTI measurements: a diffusion phantom and human brain study." NeuroImage. 2011 Jun 1; 56(3):1398-411. Epub 2011 Feb 18.
2011 Jun 1
Sanders JO, Howell J, Qiu X. "Comparison of the Paley method using chronological age with use of skeletal maturity for predicting mature limb length in children." The Journal of bone and joint surgery. American volume. 2011 Jun 1; 93(11):1051-6.
2011 Apr
Liu X, Tian W, Kolar B, Yeaney GA, Qiu X, Johnson MD, Ekholm S. "MR diffusion tensor and perfusion-weighted imaging in preoperative grading of supratentorial nonenhancing gliomas." Neuro-oncology. 2011 Apr; 13(4):447-55. Epub 2011 Feb 04.
2010 Apr
Sepesi B, Watson TJ, Zhou D, Polomsky M, Litle VR, Jones CE, Raymond DP, Hu R, Qiu X, Peters JH. "Are endoscopic therapies appropriate for superficial submucosal esophageal adenocarcinoma? An analysis of esophagectomy specimens." Journal of the American College of Surgeons. 2010 Apr; 210(4):418-27.
2010 Feb 1
Hu R, Qiu X, Glazko G. "A new gene selection procedure based on the covariance distance." Bioinformatics. 2010 Feb 1; 26(3):348-54. Epub 2009 Dec 08.
2009 Dec 1
Will RE, Stokes IA, Qiu X, Walker MR, Sanders JO. "Cobb angle progression in adolescent scoliosis begins at the intervertebral disc." Spine. 2009 Dec 1; 34(25):2782-6.
2009 Dec
Sepesi B, Raymond DP, Polomsky M, Watson TJ, Litle VR, Jones CE, Hu R, Qiu X, Peters JH. "Does the value of PET-CT extend beyond pretreatment staging? An analysis of survival in surgical patients with esophageal cancer." Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract. 2009 Dec; 13(12):2121-7. Epub 2009 Oct 01.
2009 May 29
Nott SL, Huang Y, Li X, Fluharty BR, Qiu X, Welshons WV, Yeh S, Muyan M. "Genomic responses from the estrogen-responsive element-dependent signaling pathway mediated by estrogen receptor alpha are required to elicit cellular alterations." The Journal of biological chemistry. 2009 May 29; 284(22):15277-88. Epub 2009 Mar 24.
2009 Jan 15
Hu R, Qiu X, Glazko G, Klebanov L, Yakovlev A. "Detecting intergene correlation changes in microarray analysis: a new approach to gene selection." BMC bioinformatics. 2009 Jan 15; 10:20. Epub 2009 Jan 15.
2008 May
Li X, Nott SL, Huang Y, Hilf R, Bambara RA, Qiu X, Yakovlev A, Welle S, Muyan M. "Gene expression profiling reveals that the regulation of estrogen-responsive element-independent genes by 17 beta-estradiol-estrogen receptor beta is uncoupled from the induction of phenotypic changes in cell models." Journal of molecular endocrinology. 2008 May; 40(5):211-29.
2008 Apr
Klebanov L, Qiu X, Yakovlev A. "Testing differential expression in nonoverlapping gene pairs: a new perspective for the empirical Bayes method." Journal of bioinformatics and computational biology. 2008 Apr; 6(2):301-16.
2008 Mar
Wuertzer CA, Sullivan MA, Qiu X, Federoff HJ. "CNS delivery of vectored prion-specific single-chain antibodies delays disease onset." Molecular therapy : the journal of the American Society of Gene Therapy. 2008 Mar; 16(3):481-6. Epub 2008 Jan 08.
2007 Aug
Qiu X, Yakovlev A. "Comments on probabilistic models behind the concept of false discovery rate." Journal of bioinformatics and computational biology. 2007 Aug; 5(4):963-75.
2007 Jan
Klebanov L, Qiu X, Welle S, Yakovlev A. "Statistical methods and microarray data." Nature biotechnology. 2007 Jan; 25(1):25-6; author reply 26-7.
2006 Oct
Qiu X, Yakovlev A. "Some comments on instability of false discovery rate estimation." Journal of bioinformatics and computational biology. 2006 Oct; 4(5):1057-68.
2006 Jul
Almudevar A, Klebanov LB, Qiu X, Salzman P, Yakovlev AY. "Utility of correlation measures in analysis of gene expression." NeuroRx : the journal of the American Society for Experimental NeuroTherapeutics. 2006 Jul; 3(3):384-95.
2006 Feb 1
Qiu X, Xiao Y, Gordon A, Yakovlev A. "Assessing stability of gene selection in microarray data analysis." BMC bioinformatics. 2006 Feb 1; 7:50. Epub 2006 Feb 01.
2005 May 16
Qiu X, Brooks AI, Klebanov L, Yakovlev N. "The effects of normalization on the correlation structure of microarray data." BMC bioinformatics. 2005 May 16; 6:120. Epub 2005 May 16.
Qiu X, Klebanov L, Yakovlev A. "Correlation between gene expression levels and limitations of the empirical bayes methodology for finding differentially expressed genes." Statistical applications in genetics and molecular biology. 2005 4:Article34. Epub 2005 Nov 22.
Qiu, X.; Hong, Y.; Shen, Y. "An Improvement on the concentration-compactness principle". Mathematicae Applicatae Sinica. 2001; 17: 60-67.


Wu, S.; Liu, Z. P.; Qiu, X.; Wu, H.. "High-Dimensional Ordinary Differential Equation Models for Reconstructing Genome-Wide Dynamic Regulatory Networks". Topics in Applied Statistics. New York: Springer, 2013. 173-190
Xing Qiu and Lev Klebanov. "Gene selection with the delta-sequence method". Statistical Methods for Microarray Data Analysis. : Humana Press, 2012.