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Patrick J. Murphy, Ph.D.

Publications

Showing all 14 journal articles & 1 books available

Journal Articles

10/8/2020
Murphy KE, Meng FW, Makowski CE, Murphy PJ. "Genome-wide chromatin accessibility is restricted by ANP32E." Nature communications.. 2020 Oct 8; 11(1):5063. Epub 2020 Oct 08.

10/2020
Whiteland H, Crusco A, Bloemberg LW, Tibble-Howlings J, Forde-Thomas J, Coghlan A, Murphy PJ, Hoffmann KF. "Quorum sensing N-Acyl homoserine lactones are a new class of anti-schistosomal." PLoS neglected tropical diseases.. 2020 Oct 0; 14(10):e0008630. Epub 2020 Oct 19.

6/10/2020
Murphy PJ, Guo J, Jenkins TG, James ER, Hoidal JR, Huecksteadt T, Broberg DS, Hotaling JM, Alonso DF, Carrell DT, Cairns BR, Aston KI. "NRF2 loss recapitulates heritable impacts of paternal cigarette smoke exposure." PLoS genetics.. 2020 Jun 10; 16(6):e1008756. Epub 2020 Jun 10.

9/30/2019
Rougeot J, Chrispijn ND, Aben M, Elurbe DM, Andralojc KM, Murphy PJ, Jansen PWTC, Vermeulen M, Cairns BR, Kamminga LM. "Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan." Development.. 2019 Sep 30; 146(19)Epub 2019 Sep 30.

2/22/2018
Murphy PJ, Wu SF, James CR, Wike CL, Cairns BR. "Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming." Cell.. 2018 Feb 22; 172(5):993-1006.e13. Epub 2018 Feb 15.

11/2017
Jenkins TG, James ER, Alonso DF, Hoidal JR, Murphy PJ, Hotaling JM, Cairns BR, Carrell DT, Aston KI. "Cigarette smoking significantly alters sperm DNA methylation patterns." Andrology.. 2017 Nov 0; 5(6):1089-1099. Epub 2017 Sep 26.

10/5/2017
Guo J, Grow EJ, Yi C, Mlcochova H, Maher GJ, Lindskog C, Murphy PJ, Wike CL, Carrell DT, Goriely A, Hotaling JM, Cairns BR. "Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development." Cell stem cell.. 2017 Oct 5; 21(4):533-546.e6.

2016
Murphy PJ, Cairns BR. "Genome-wide DNA methylation profiling in zebrafish." Methods in cell biology.. 2016 135:345-59. Epub 2016 Jun 21.

5/7/2013
Murphy PJ, Cipriany BR, Wallin CB, Ju CY, Szeto K, Hagarman JA, Benitez JJ, Craighead HG, Soloway PD. "Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells." Proceedings of the National Academy of Sciences of the United States of America.. 2013 May 7; 110(19):7772-7. Epub 2013 Apr 22.

11/21/2012
Benítez JJ, Topolancik J, Tian HC, Wallin CB, Latulippe DR, Szeto K, Murphy PJ, Cipriany BR, Levy SL, Soloway PD, Craighead HG. "Microfluidic extraction, stretching and analysis of human chromosomal DNA from single cells." Lab on a chip.. 2012 Nov 21; 12(22):4848-54.

5/29/2012
Cipriany BR, Murphy PJ, Hagarman JA, Cerf A, Latulippe D, Levy SL, Benítez JJ, Tan CP, Topolancik J, Soloway PD, Craighead HG. "Real-time analysis and selection of methylated DNA by fluorescence-activated single molecule sorting in a nanofluidic channel." Proceedings of the National Academy of Sciences of the United States of America.. 2012 May 29; 109(22):8477-82. Epub 2012 May 14.

2012
Park YJ, Herman H, Gao Y, Lindroth AM, Hu BY, Murphy PJ, Putnam JR, Soloway PD. "Sequences sufficient for programming imprinted germline DNA methylation defined." PloS one.. 2012 7(3):e33024. Epub 2012 Mar 05.

5/13/2011
Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, Gotoh K, Hiura H, Arima T, Fujiyama A, Sado T, Shibata T, Nakano T, Lin H, Ichiyanagi K, Soloway PD, Sasaki H. "Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus." Science.. 2011 May 13; 332(6031):848-52.

3/15/2010
Cipriany BR, Zhao R, Murphy PJ, Levy SL, Tan CP, Craighead HG, Soloway PD. "Single molecule epigenetic analysis in a nanofluidic channel." Analytical chemistry.. 2010 Mar 15; 82(6):2480-7.

Books & Chapters

2014
Chapter Title: Epigenetic Changes in the Paternal Germline
Book Title: Transgenerational Epigenetics : Evidence and Debate
Author List: Murphy KE, Murphy PJ, and Carrell DT
Edited By: T. Tollefsbol
Published By: Oxford: Academic Press2014