Recent Publications

• 1. Walker EJ
  2. Bettinger JQ
  3. Welle KA
  4. Hryhorenko JR
  5. Molina Vargas AM
  6. O'Connell MR
  7. Ghaemmaghami S
  Protein folding stabilities are a major determinant of oxidation rates for buried methionine residues.; The Journal of biological chemistry. 2022 Mar 25.
• 1. Chandrasekar EK
  2. Ali MK
  3. Wei J
  4. Narayan KV
  5. Owens-Gary MD
  6. Bullard KM
  Trends in depression by glycemic status: Serial cross-sectional analyses of the National Health and Nutrition Examination Surveys, 2005-2016.; Primary care diabetes. 2022 Mar 07.
• 1. Schroeder GM
  2. Cavender CE
  3. Blau ME
  4. Jenkins JL
  5. Mathews DH
  6. Wedekind JE
  A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control.; Nature communications; Vol 13(1). 2022 Jan 11.
• 1. Horvath S
  2. Haghani A
  3. Macoretta N
  4. Ablaeva J
  5. Zoller JA
  6. Li CZ
  7. Zhang J
  8. Takasugi M
  9. Zhao Y
  10. Rydkina E
  11. Zhang Z
  12. Emmrich S
  13. Raj K
  14. Seluanov A
  15. Faulkes CG
  16. Gorbunova V
  DNA methylation clocks tick in naked mole rats but queens age more slowly than nonbreeders.; Nature aging; Vol 2(1). 2022 Jan.
• 1. Ruff GL
  2. Murphy KE
  3. Smith ZR
  4. Vertino PM
  5. Murphy PJ
  Subtype-Independent ANP32E Reduction During Breast Cancer Progression in Accordance with Chromatin Relaxation.; BMC cancer; Vol 21(1). 2021 Dec 18.
• 1. Galindo RJ
  2. Ali MK
  3. Funni SA
  4. Dodge AB
  5. Kurani SS
  6. Shah ND
  7. Umpierrez GE
  8. McCoy RG
  Hypoglycemic and Hyperglycemic Crises Among U.S. Adults With Diabetes and End-stage Kidney Disease: Population-Based Study, 2013-2017.; Diabetes care. 2021 Nov 05.
• 1. Lei X
  2. Mudiyanselage TB
  3. Zhang Y
  4. Bian C
  5. Lan W
  6. Yu N
  7. Pan Y
  A comprehensive survey on computational methods of non-coding RNA and disease association prediction.; Briefings in bioinformatics; Vol 22(4). 2021 Jul 20.
• 1. Asantewaa G
  2. Harris IS
  Glutathione and its precursors in cancer.; Current opinion in biotechnology; Vol 68. 2021 Apr.
• 1. Srivastava Y
  2. Bonn-Breach R
  3. Chavali SS
  4. Lippa GM
  5. Jenkins JL
  6. Wedekind JE
  Affinity and Structural Analysis of the U1A RNA Recognition Motif with Engineered Methionines to Improve Experimental Phasing.; Crystals; Vol 11(3). 2021 Mar.
• 1. Wu J
  2. Venkata Subbaiah KC
  3. Jiang F
  4. Hedaya O
  5. Mohan A
  6. Yang T
  7. Welle K
  8. Ghaemmaghami S
  9. Tang WHW
  10. Small E
  11. Yan C
  12. Yao P
  MicroRNA-574 regulates FAM210A expression and influences pathological cardiac remodeling.; EMBO molecular medicine. 2020 Dec 28.
• 1. Maji D
  2. Glasser E
  3. Henderson S
  4. Galardi J
  5. Pulvino MJ
  6. Jenkins JL
  7. Kielkopf CL
  Representative cancer-associated U2AF2 mutations alter RNA interactions and splicing.; The Journal of biological chemistry. 2020 Oct 05.
• 1. Schroeder GM
  2. Dutta D
  3. Cavender CE
  4. Jenkins JL
  5. Pritchett EM
  6. Baker CD
  7. Ashton JM
  8. Mathews DH
  9. Wedekind JE
  Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.; Nucleic acids research. 2020 Jun 29.
• 1. Hulver MJ
  2. Trautman JP
  3. Goodwin AP
  4. Roszczenko SK
  5. Fogarty KH
  6. Miller HB
  Human Tat-specific factor 1 binds the HIV-1 genome and selectively transports HIV-1 RNAs.; Molecular biology reports; Vol 47(3). 2020 Mar.
• 1. Tombline G
  2. Gigas J
  3. Macoretta N
  4. Zacher M
  5. Emmrich S
  6. Zhao Y
  7. Seluanov A
  8. Gorbunova V
  Proteomics of Long-Lived Mammals.; Proteomics. 2019 Nov 18.
• 1. Bonn-Breach R
  2. Gu Y
  3. Jenkins J
  4. Fasan R
  5. Wedekind J
  Structure of Sonic Hedgehog protein in complex with zinc(II) and magnesium(II) reveals ion-coordination plasticity relevant to peptide drug design.; Acta crystallographica. Section D, Structural biology; Vol 75(Pt 11). 2019 Nov 01.
• 1. Chavali SS
  2. Bonn-Breach R
  3. Wedekind JE
  Face-time with TAR: Portraits of an HIV-1 RNA with diverse modes of effector recognition relevant for drug discovery.; The Journal of biological chemistry. 2019 May 12.
• 1. Walker EJ
  2. Bettinger JQ
  3. Welle KA
  4. Hryhorenko JR
  5. Ghaemmaghami S
  Global analysis of methionine oxidation provides a census of folding stabilities for the human proteome.; Proceedings of the National Academy of Sciences of the United States of America. 2019 Mar 07.
• 1. Shaheen R
  2. Tasak M
  3. Maddirevula S
  4. Abdel-Salam GMH
  5. Sayed ISM
  6. Alazami AM
  7. Al-Sheddi T
  8. Alobeid E
  9. Phizicky EM
  10. Alkuraya FS
  PUS7 mutations impair pseudouridylation in humans and cause intellectual disability and microcephaly.; Human genetics. 2019 Feb 18.
• 1. Venkata Subbaiah KC
  2. Hedaya O
  3. Wu J
  4. Jiang F
  5. Yao P
  Mammalian RNA switches: Molecular rheostats in gene regulation, disease, and medicine.; Computational and structural biotechnology journal; Vol 17. 2019.
• 1. Tan L
  2. Ke Z
  3. Tombline G
  4. Macoretta N
  5. Hayes K
  6. Tian X
  7. Lv R
  8. Ablaeva J
  9. Gilbert M
  10. Bhanu NV
  11. Yuan ZF
  12. Garcia BA
  13. Shi YG
  14. Shi Y
  15. Seluanov A
  16. Gorbunova V
  Naked Mole Rat Cells Have a Stable Epigenome that Resists iPSC Reprogramming.; Stem cell reports; Vol 9(5). 2017 Nov 14.
• 1. Elbarbary RA
  2. Miyoshi K
  3. Hedaya O
  4. Myers JR
  5. Maquat LE
  UPF1 helicase promotes TSN-mediated miRNA decay.; Genes & development; Vol 31(14). 2017 Jul 15.
• 1. Kumar AH
  2. Martin K
  3. Doyle B
  4. Huang CL
  5. Pillai GK
  6. Ali MT
  7. Skelding KA
  8. Wang S
  9. Gleeson BM
  10. Jahangeer S
  11. Ritman EL
  12. Russell SJ
  13. Caplice NM
  Intravascular cell delivery device for therapeutic VEGF-induced angiogenesis in chronic vascular occlusion.; Biomaterials; Vol 35(32). 2014 Oct.
• 1. Hollman JH
  2. Galardi CM
  3. Lin IH
  4. Voth BC
  5. Whitmarsh CL
  Frontal and transverse plane hip kinematics and gluteus maximus recruitment correlate with frontal plane knee kinematics during single-leg squat tests in women.; Clinical biomechanics (Bristol, Avon); Vol 29(4). 2014 Apr.
• 1. Ananthanarayanan V
  2. Pan Y
  3. Tretiakova M
  4. Amin MB
  5. Cheng L
  6. Epstein JI
  7. Grignon DJ
  8. Hansel DE
  9. Jimenez RE
  10. McKenney JK
  11. Montironi R
  12. Oliva E
  13. Osunkoya AO
  14. Rao P
  15. Reuter VE
  16. Ro JY
  17. Shen SS
  18. Srigley JR
  19. Tsuzuki T
  20. Yao JL
  21. Antic T
  22. Haber M
  23. Taxy JB
  24. Paner GP
  Influence of histologic criteria and confounding factors in staging equivocal cases for microscopic perivesical tissue invasion (pT3a): an interobserver study among genitourinary pathologists.; The American journal of surgical pathology; Vol 38(2). 2014 Feb.