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Publications

1. Jain A
2. Mayeen NF
3. Meadow ME
4. Kalandadze N
5. Swovick K
6. Welle KA
7. Hryhorenko JR
8. Ghaemmaghami S
Structural proteomics reveals that misfolded nascent proteins expose buried lysines for ubiquitination and rapid proteasomal degradation.; Cell reports; Vol 45(7), pp. 117620. 2026 Jul 03.
1. Shabangu TS
2. Kierzek E
3. Arteaga S
4. Orf GS
5. Stone J
6. Hiltke OM
7. Miaro M
8. Jolley EA
9. Soszyńska-Jóźwiak M
10. Szabat M
11. Aviran S
12. Bevilacqua PC
13. Znosko BM
14. Kierzek R
15. Mathews DH
Nearest Neighbor Parameters for Estimating the Folding Stability of RNA Including Pseudouridine.; bioRxiv : the preprint server for biology. 2026 May 17.
1. Kierzek E
2. Shabangu TS
3. Hiltke OM
4. Miaro M
5. Arteaga S
6. Znosko BM
7. Jolley EA
8. Bevilacqua PC
9. SantaLucia J
10. SantaLucia HA
11. Lin H
12. Metkar M
13. Aviran S
14. Soszyńska-Jóźwiak M
15. Kierzek R
16. Mathews DH
RNA Folding Nearest Neighbor Parameters Including the Modification 1-Methyl-Pseudouridine.; bioRxiv : the preprint server for biology. 2026 Apr 11.
1. Kirchhoff CL
2. Powell HR
3. Galardi JW
4. Loerch S
5. Pulvino MJ
6. Jenkins JL
7. Boutz PL
8. Kielkopf CL
SF3B1 Phosphorylation Prompts U2AF2 Dissociation for Widespread Control of pre-mRNA Splicing.; bioRxiv : the preprint server for biology. 2026 Jan 20.
1. Zhang K
2. Manning AC
3. Lentini JM
4. Howard J
5. Dalwigk F
6. Maroofian R
7. Efthymiou S
8. Chan P
9. Eliseev SI
10. Yang Z
11. Chang H
12. Karimiani EG
13. Bakhshoodeh B
14. Houlden H
15. Kaiser SM
16. Lowe TM
17. Fu D
Human TRMT1 and TRMT1L paralogs ensure the proper modification state, stability, and function of tRNAs.; Cell reports; Vol 44(1), pp. 115092. 2025 Jan 08.
1. Srivastava Y
2. Akinyemi O
3. Rohe TC
4. Pritchett EM
5. Baker CD
6. Sharma A
7. Jenkins JL
8. Mathews DH
9. Wedekind JE
Two riboswitch classes that share a common ligand-binding fold show major differences in the ability to accommodate mutations.; Nucleic acids research. 2024 Oct 16.
1. Poruthoor AJ
2. Stallone JJ
3. Miaro M
4. Sharma A
5. Grossfield A
System size effects on the free energy landscapes from molecular dynamics of phase-separating bilayers.; The Journal of chemical physics; Vol 161(14). 2024 Oct 14.
1. Beard JW
2. Hunt SL
3. Evans A
4. Goenner C
5. Miller BL
Mimicking a Cellular Crowding Environment for Enzyme-Free Paper-Based Nucleic Acid Tests at the Point of Care.; ACS sensors. 2024 Sep 30.
1. Beard JW
2. Hunt SL
3. Evans A
4. Goenner C
5. Miller BL
Mimicking an in cellulo environment for enzyme-free paper-based nucleic acid tests at the point of care.; bioRxiv : the preprint server for biology. 2024 Feb 29.
1. Poruthoor AJ
2. Sharma A
3. Grossfield A
Understanding the Free Energy Landscape of Phase Separation in Lipid Bilayers using Molecular Dynamics.; Biophysical journal. 2023 Sep 22.
1. Poruthoor AJ
2. Grossfield A
Understanding the Free Energy Landscape of Phase Separation in Lipid Bilayers using Molecular Dynamics.; bioRxiv : the preprint server for biology. 2023 Feb 03.
1. Mukherjee K
2. Schubl SD
3. Tominaga G
4. Cantrell S
5. Kim B
6. Haines KL
7. Kaups KL
8. Barraco R
9. Staudenmayer K
10. Knowlton LM
11. Shiroff AM
12. Bauman ZM
13. Brooks SE
14. Kaafarani H
15. Crandall M
16. Nirula R
17. Agarwal SK
18. Como JJ
19. Haut ER
20. Kasotakis G
Non-surgical management and analgesia strategies for older adults with multiple rib fractures: A systematic review, meta-analysis, and joint practice management guideline from the Eastern Association for the Surgery of Trauma and the Chest Wall Injury Society.; The journal of trauma and acute care surgery; Vol 94(3), pp. 398-407. 2022 Nov 15.
1. Michel LV
2. Kaur R
3. Gleghorn ML
4. Holmquist M
5. Pryharski K
6. Perdue J
7. Jones SP
8. Jackson N
9. Pilo I
10. Kasper A
11. Labbe N
12. Pichichero M
Haemophilus influenzae Protein D antibody suppression in a multi-component vaccine formulation.; FEBS open bio; Vol 12(12), pp. 2191-2202. 2022 Oct 28.
1. Jones SP
2. Cook KH
3. Holmquist ML
4. Almekinder LJ
5. Delaney AM
6. Charles R
7. Labbe N
8. Perdue J
9. Jackson N
10. Pichichero ME
11. Kaur R
12. Michel LV
13. Gleghorn ML
Vaccine target and carrier molecule nontypeable Haemophilus influenzae protein D dimerizes like the close Escherichia coli GlpQ homolog but unlike other known homolog dimers.; Proteins; Vol 91(2), pp. 161-170. 2022 Sep 16.
1. Jones SP
2. Goossen C
3. Lewis SD
4. Delaney AM
5. Gleghorn ML
Not making the cut: Techniques to prevent RNA cleavage in structural studies of RNase-RNA complexes.; Journal of structural biology: X; Vol 6, pp. 100066. 2022 Mar 11.
1. Rook ML
2. Miaro M
3. Couch T
4. Kneisley DL
5. Musgaard M
6. MacLean DM
Mutation of a conserved glutamine residue does not abolish desensitization of acid-sensing ion channel 1.; The Journal of general physiology; Vol 153(8). 2021 Aug 02.
1. Beard JW
2. Murty S
3. Caulkins C
4. Strenk AR
5. Luta EP
6. Hunt SL
7. Yates MZ
8. Miller BL
Leveraging Arylboronic Acid - Cellulose Binding as a Versatile and Scalable Approach to Hydrophobic Patterning.; Advanced materials technologies; Vol 7(7). 2021 Jan 16.