Publications

• 1. Thakar J
  2. Qian Y
  3. Benoodt L
  4. Roumanes D
  5. Qiu X
  6. Laniewski N
  7. Chu C
  8. Slaunwhite C
  9. Wang L
  10. Mandava A
  11. Chang I
  12. Falsey AR
  13. Caserta MT
  14. Mariani TJ
  15. Scheuermann RH
  16. Walsh EE
  17. Topham DJ
  Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein.; Vaccine: X; Vol 5. 2020 Aug 07.
• 1. Schroeder GM
  2. Dutta D
  3. Cavender CE
  4. Jenkins JL
  5. Pritchett EM
  6. Baker CD
  7. Ashton JM
  8. Mathews DH
  9. Wedekind JE
  Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.; Nucleic acids research. 2020 Jun 29.
• 1. Hilchey SP
  2. Palshikar MG
  3. Emo JA
  4. Li D
  5. Garigen J
  6. Wang J
  7. Mendelson ES
  8. Cipolla V
  9. Thakar J
  10. Zand MS
  Cyclosporine a directly affects human and mouse b cell migration in vitro by disrupting a hIF-1 αdependent, o2 sensing, molecular switch.; BMC immunology; Vol 21(1). 2020 Mar 18.
• 1. Benoodt L
  2. Thakar J
  Network Analysis of Large-Scale Data and Its Application to Immunology.; Methods in molecular biology (Clifton, N.J.); Vol 2131. 2020.
• 1. Maji D
  2. Grossfield AM
  3. Kielkopf CL
  Structures of SF3b1 reveal a dynamic Achilles heel of spliceosome assembly: Implications for cancer-associated abnormalities and drug discovery.; Biochimica et biophysica acta. Gene regulatory mechanisms. 2019 Nov 07.
• 1. Palli R
  2. Palshikar MG
  3. Thakar J
  Executable pathway analysis using ensemble discrete-state modeling for large-scale data.; PLoS computational biology; Vol 15(9). 2019 Sep.
• 1. Walsh EE
  2. Mariani TJ
  3. Chu C
  4. Grier A
  5. Gill SR
  6. Qiu X
  7. Wang L
  8. Holden-Wiltse J
  9. Corbett A
  10. Thakar J
  11. Benoodt L
  12. McCall MN
  13. Topham DJ
  14. Falsey AR
  15. Caserta MT
  Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study.; JMIR research protocols; Vol 8(6). 2019 Jun 06.
• 1. Chavali SS
  2. Bonn-Breach R
  3. Wedekind JE
  Face-time with TAR: Portraits of an HIV-1 RNA with diverse modes of effector recognition relevant for drug discovery.; The Journal of biological chemistry. 2019 May 12.
• 1. Loerch S
  2. Leach JR
  3. Horner SW
  4. Maji D
  5. Jenkins JL
  6. Pulvino M
  7. Kielkopf CL
  The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface.; The Journal of biological chemistry. 2018 Dec 19.
• 1. Belashov IA
  2. Crawford DW
  3. Cavender CE
  4. Dai P
  5. Beardslee PC
  6. Mathews DH
  7. Pentelute BL
  8. McNaughton BR
  9. Wedekind JE
  Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.; Nucleic acids research. 2018 Jun 29.