URochester Medicine / Labs / Dongmei Li Lab / Publications

Publications

1. Nicandri G
2. Davis E
3. Meyer A
4. Brady J
5. Mulcahey MK
6. Grawe B
7. Gehrmann R
8. Marzo J
9. Li D
10. Garrigues GE
Fundamentals of Arthroscopic Surgery Training Program Shows Transfer Validity Through Enhanced Operative Arthroscopic Performance.; Arthroscopy : the journal of arthroscopic & related surgery : official publication of the Arthroscopy Association of North America and the International Arthroscopy Association. 2026 Sep 20.
1. Wang Y
2. Sabit A
3. Anzalone J
4. Li D
5. Hurwitz E
6. Fadul N
7. Wei S
8. Olex AL
9. Safo SE
10. Islam JY
11. Brown TT
12. Chute CG
13. Haendel MA
14. Varley CD
15. Butzin-Dozier Z
16. Camacho-Rivera M
17. Nkodo ENE
18. Patel RC
19. Sun J
Increasing Multimorbidity Burden After COVID-19 Infection Among People With and Without HIV in the United States: Insights From the National Clinical Cohort Collaborative (N3C).; Open forum infectious diseases; Vol 13(9), pp. ofag560. 2026 Sep 18.
1. Uceda VC
2. Orfin RH
3. Panizoni E
4. LanzDuret-Hernandez J
5. Hurtado-deMendoza A
6. Chávez-Iñiguez A
7. Fuller D
8. Marquez DX
9. Ossip DJ
10. Li D
11. Vasquez E
12. Ramos-Santiago JW
13. Carter Bawa L
14. Aleese RM
15. Yousefi Nooraie R
16. McIntosh S
17. Cupertino AP
18. Cartujano-Barrera F
Feasibility of using a patient portal to recruit Latino adults into a smoking cessation and physical activity randomized clinical trial: A secondary analysis.; Tobacco induced diseases; Vol 24. 2026 Jul 26.
1. Xie Z
2. Ye P
3. Wu M
4. Han Y
5. Shimazaki Y
6. Ross JC
7. Sutfin EL
8. Li D
Understanding online sentiment toward waterpipe tobacco smoking by applying deep-learning language models to Twitter posts (2021-2023) in the United States.; Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco; Vol 28(8), pp. 1420-1429. 2026 Jul 22.
1. He Y
2. Roberts ME
3. Li D
4. Zhang S
5. Keller-Hamilton BL
6. Mays D
7. Shang C
Correlates of oral nicotine pouch use, use frequency and flavour use among US adults.; Tobacco control. 2026 Jul 17.
1. Shen H
2. Li D
3. Liu Y
A general framework for testing clustering significance and variable-level inference in high-dimensional data.; Biometrics; Vol 82(3). 2026 Jul 01.
1. Ramos-Santiago JW
2. Orfin RH
3. Evans MJ
4. Sutton MD
5. Barria López F
6. Chávez-Iñiguez A
7. Alvarez G
8. McIntosh S
9. Adler DH
10. Abar BW
11. Li D
12. Hurtado-de-Mendoza A
13. Carter-Bawa L
14. Rivera MP
15. Cupertino AP
16. Cartujano-Barrera F
Feasibility, acceptability, and preliminary impact of a text messaging intervention to increase the uptake of lung cancer screening among Latinos: single-arm pilot study.; Journal of thoracic disease; Vol 18(7), pp. 727. 2026 Jun 23.
1. Suryadevara V
2. Farzad N
3. Yang M
4. Xu K
5. Tsankov A
6. Thompson RC
7. Sloan N
8. Phatnani H
9. Olinger B
10. Mares JA
11. Lund AN
12. Li D
13. Gorospe M
14. Ding L
15. Beckmann N
16. Basisty N
17. Anerillas C
18. Robbins P
19. Fan R
Charting human cellular senescence in aging and disease.; Cell; Vol 189(12), pp. 3501-3505. 2026 Jun 11.
1. Xie Z
2. Tang J
3. Li D
Spatiotemporal analysis of electronic cigarette discussion on Twitter/X using natural language processing.; BMC public health; Vol 26(1). 2026 Jun 04.
1. Yao J
2. Li D
3. Ross JC
4. Xie Z
Exploring Social Media Discourse on Cigars: Insights from Twitter/X Data.; Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco; Vol 28(5), pp. 864-872. 2026 Apr 22.
1. Hasanaj E
2. Beaulieu D
3. Wang C
4. Hu Q
5. Rosas L
6. Bueno M
7. Sembrat JC
8. Pineda RH
9. Melo-Narvaez MC
10. Cardenes N
11. Yanwu Z
12. Yingze Z
13. Lafyatis R
14. Morris A
15. Mora A
16. Rojas M
17. Li D
18. Rahman I
19. Pryhuber GS
20. Lehmann M
21. Alder J
22. Gurkar A
23. Finkel T
24. Ma Q
25. Lugo-Martinez J
26. Póczos B
27. Bar-Joseph Z
28. Eickelberg O
29. Königshoff M
SenSet defines cell-type specific senescence signatures in the aged human lung.; The EMBO journal. 2026 Apr 10.
1. Yang H
2. Han D
3. Hurwitz E
4. Anzalone J
5. Varley CD
6. Safo SE
7. Sun J
8. Li D
9. Camacho-Rivera M
10. Fadul N
11. Butzin-Dozier Z
12. Nosyk B
13. Patel RC
14. Zang X
Racial, ethnic, and regional disparities in HIV testing during the COVID-19 pandemic in the USA: a nationwide, retrospective, observational study using National Clinical Cohort Collaborative data.; The lancet. HIV; Vol 13(3), pp. e185-e193. 2026 Feb 13.
1. O'Connor RJ
2. Li D
3. Xie Z
4. Page MK
5. Felicione NJ
6. Schneller-Najm LM
7. Ye P
8. Raczyk A
9. Bansal-Travers M
10. Goniewicz ML
Characterising 'Spree Bar': an examination of the popularity, marketing and composition of a vaping device with a nicotine analogue across multiple data streams.; Tobacco control. 2026 Feb 10.
1. Tang C
2. Sittplangkoon C
3. Xiang C
4. Schnur L
5. Duan R
6. Lin X
7. Li D
8. Yao Z
Evaluating Osteoarthritis Severity in Mice Using μCT-Derived Geometric Indices.; Biology; Vol 15(3). 2026 Jan 31.
1. Li D
2. Liu P
3. Rahman I
4. Zand M
5. Pryhuber G
6. Dye T
7. Goniewicz M
8. Gurkar AU
9. Königshoff M
10. Eickelberg O
11. Mora A
12. Rojas M
13. Ma Q
14. Lugo-Martinez J
15. Bar-Joseph Z
16. Lanna S
17. Finkel T
18. Xie Z
Evaluation of statistical differential analysis methods for identification of senescent cells using single-cell transcriptomics.; Cell reports methods. 2026 Jan 22.
1. Essam Nkodo EN
2. Maheria P
3. Hurwitz E
4. Anzalone AJ
5. Li D
6. Islam JY
7. Sun J
8. Varley CD
9. Butzin-Dozier Z
10. Safo SE
11. Kirksey K
12. Hassan SA
13. Camacho-Rivera M
14. Patel RC
15. Fadul N
HIV Status and COVID-19 Treatment Disparities in the US National Clinical Cohort Collaborative.; Open forum infectious diseases; Vol 13(1), pp. ofaf731. 2026 Jan 15.
1. Xie Z
2. Korrapolu NK
3. Dubey A
4. Song L
5. Xu C
6. Wilson KM
7. Cupertino A
8. Li D
Leveraging Large Language Models to Identify Engagement-Driving Features in Vaping-Related TikTok Videos: Cross-Sectional Study.; Journal of medical Internet research; Vol 27, pp. e76265. 2025 Nov 20.
1. Sun Y
2. Lin K
3. Effah F
4. Barrera FC
5. Li D
6. McIntosh S
7. McGraw MD
8. Rahman I
Toxicity of Humectants Propylene Glycol and Vegetable Glycerin in Electronic Nicotine Delivery Systems.; Toxicology letters. 2025 Oct 01.
1. Xie Z
2. Liber AC
3. Goniewicz ML
4. O'Connor R
5. Li D
Digital footprints of the US e-cigarette market: correlations among retail sales data, social media activity and Google search trends.; Tobacco control. 2025 Sep 19.
1. Li S
2. Agudelo Garcia PA
3. Aliferis C
4. Becich MJ
5. Calyeca J
6. Cosgrove BD
7. Elisseeff J
8. Farzad N
9. Fertig EJ
10. Glass C
11. Gu L
12. Hu Q
13. Ji Z
14. Königshoff M
15. LeBrasseur NK
16. Li D
17. Ma A
18. Ma Q
19. Menon V
20. Mitchell JT
21. Mora AL
22. Nagaraj S
23. Nelson AC
24. Niedernhofer LJ
25. Rojas M
26. Taha HB
27. Wang J
28. Wang S
29. Wu PH
30. Xie J
31. Xu M
32. Yu M
33. Zhang X
34. Zhao Y
35. Adams PD
36. Aguayo-Mazzucato C
37. Baker DJ
38. Benz C
39. Bernlohr DA
40. Bueno M
41. Chen J
42. Childs BG
43. Chuang JH
44. Chung D
45. Dileepan M
46. Ding L
47. Dong M
48. Duncan F
49. Enninful A
50. Flynn WF
51. Franco AC
52. Furman D
53. Garovic V
54. Halene S
55. Herman AB
56. Hertzel AV
57. Iwasaki K
58. Jeon H
59. Kang JW
60. Karmakar S
61. Kirkland JL
62. Korstanje R
63. Kummerfeld E
64. Lee JH
65. Liu Y
66. Lu Y
67. Lugo-Martinez J
68. Martini H
69. Melov S
70. Musi N
71. Passos JF
72. Peters ST
73. Rahman I
74. Ramasamy R
75. Rindone AN
76. Robbins PD
77. Robson P
78. Rodriguez-Lopez J
79. Rosas L
80. Rosenthal N
81. Schafer MJ
82. Schilling B
83. Schmidt EL
84. Schneider K
85. Sengupta K
86. Shu J
87. So PTC
88. Sun L
89. Tchkonia T
90. Teneche MG
91. Vanegas N
92. Wang J
93. Xie J
94. Yin S
95. Zhang K
96. Zhu Q
97. Fan R
Advancing biological understanding of cellular senescence with computational multiomics.; Nature genetics. 2025 Sep 15.
1. Alcantara Sanchez L
2. Alvarez Guerra E
3. Li D
4. King SM
5. Hilchey SP
6. Zhou Q
7. Dewhurst S
8. Fiscella K
9. Zand MS
Antibody Responses to SARS-CoV-2 and Common HCoVs in Hemodialysis Patients and Transplant Recipients: Data from the Dominican Republic.; Vaccines; Vol 13(9). 2025 Sep 11.
1. Quinones Tavarez Z
2. Ossip DJ
3. Li D
4. Croft DP
5. Rahman I
6. Wojtovich AP
Microbiota-Influenced Toxicological Responses in Caenorhabditis elegans Exposed to Strawberry and Menthol E-Liquids.; microPublication biology; Vol 2025. 2025 Aug 11.
1. Xie Z
2. Zhou R
3. Yun Q
4. Wu J
5. Wang Z
6. Yu M
7. Wilson KM
8. Li D
Content Analysis of Cannabis Discourses on Twitter/X in the U.S.; AJPM focus; Vol 4(6), pp. 100408. 2025 Aug 06.
1. Hurwitz E
2. Varley CD
3. Anzolone AJ
4. Madhira V
5. Olex AL
6. Sun J
7. Vaidya D
8. Fadul N
9. Islam JY
10. Jackson LE
11. Wilkins KJ
12. Butzin-Dozier Z
13. Li D
14. Safo SE
15. McMurry JA
16. Maheria P
17. Williams T
18. Hassan SA
19. Haendel MA
20. Patel RC
Identifying People Living With or Those at Risk for HIV in a Nationally Sampled Electronic Health Record Repository Called the National Clinical Cohort Collaborative: Computational Phenotyping Study.; JMIR medical informatics; Vol 13, pp. e68143. 2025 Jul 11.
1. Ye P
2. Wu M
3. Han Y
4. Shimazaki Y
5. Cornacchione Ross J
6. Sutfin EL
7. Li D
8. Xie Z
Temporal and Thematic Analysis of Promotional Waterpipe-Related Posts on Twitter/X in the US.; Substance use & misuse; Vol 60(10), pp. 1434-1441. 2025 May 05.
1. Orfin RH
2. Alaniz-Cantú EI
3. Ramos-Santiago JW
4. Martinez C
5. Guerra D
6. Ramos-Pibernus AG
7. Sartes LMA
8. Li D
9. McIntosh S
10. Ossip DJ
11. Cupertino AP
12. Cartujano-Barrera F
Assessing Text Messaging Interactivity with a Vaping Cessation Intervention Among Latino Young Adults: A Quantitative and Qualitative Analysis.; Substance use & misuse. 2025 Mar 15.
1. Li D
2. Xie Z
3. Shaikh SB
4. Rahman I
Altered expression profile of plasma exosomal microRNAs in exclusive electronic cigarette adult users.; Scientific reports; Vol 15(1), pp. 2714. 2025 Jan 21.
1. Xie Z
2. Liu X
3. Lou X
4. Li D
Public Perceptions of Very Low Nicotine Content on Twitter: Observational Study.; JMIR formative research; Vol 8, pp. e63035. 2024 Dec 04.
1. Alcantara Sanchez L
2. Alvarez Guerra E
3. Li D
4. King SM
5. Hilchey SP
6. Zhou Q
7. Dewhurst S
8. Fiscella K
9. Zand MS
Antibody Response to SARS-CoV-2 Vaccines in Transplant Recipients and Hemodialysis Patients: Data from the Dominican Republic.; Vaccines; Vol 12(12). 2024 Nov 23.
1. Shao Y
2. Gao Q
3. Wang L
4. Li D
5. Nixon AB
6. Chan C
7. Li QJ
8. Xie J
B-Lightning: using bait genes for marker gene hunting in single-cell data with complex heterogeneity.; Briefings in bioinformatics; Vol 26(1). 2024 Nov 22.
1. Nguyen ND
2. Rosas L
3. Khaliullin T
4. Jiang P
5. Hasanaj E
6. Ovando-Ricardez JA
7. Bueno M
8. Rahman I
9. Pryhuber GS
10. Li D
11. Ma Q
12. Finkel T
13. Königshoff M
14. Eickelberg O
15. Rojas M
16. Mora AL
17. Lugo-Martinez J
18. Bar-Joseph Z
scDOT: optimal transport for mapping senescent cells in spatial transcriptomics.; Genome biology; Vol 25(1), pp. 288. 2024 Nov 08.
1. Schneller-Najm LM
2. Xie Z
3. Chen J
4. Lee S
5. Xu E
6. Li D
Public Perception of the Tobacco 21 Amendment on Twitter in the United States: Observational Study.; JMIR infodemiology; Vol 4, pp. e53899. 2024 Sep 25.
1. Zou J
2. Feliciano JR
3. Xie Z
4. Li D
Public Perceptions of the Food and Drug Administration's Regulatory Authority Over Synthetic Nicotine on Twitter: Observational Study.; JMIR formative research; Vol 8, pp. e56371. 2024 Sep 19.
1. Islam JY
2. Hurwitz E
3. Li D
4. Camacho-Rivera M
5. Sun J
6. Safo S
7. Ross JM
8. Wilkins K
9. Hassan S
10. Hill EL
11. Nosyk B
12. Varley C
13. Fadul N
14. Madlock-Brown C
15. Patel RC
Associations of County-Level Social Determinants of Health with COVID-19 Related Hospitalization Among People with HIV: A Retrospective Analysis of the U.S. National COVID Cohort Collaborative (N3C).; AIDS and behavior. 2024 Sep 18.
1. Orfin RH
2. Ramos Santiago JW
3. Decena Soriano R
4. Romero Acosta E
5. Bermudez D
6. Rodriguez YL
7. Li D
8. Rahman I
9. McIntosh S
10. Ossip DJ
11. Cupertino AP
12. Cartujano-Barrera F
Kick Vaping: Feasibility, acceptability, and preliminary impact of a vaping cessation text messaging intervention for Latino young adults.; Journal of ethnicity in substance abuse. 2024 Aug 28.
1. Chen J
2. He J
3. Xie Z
4. Li D
Public perceptions and discussions of synthetic nicotine on Twitter.; Frontiers in public health; Vol 12, pp. 1370076. 2024 Jul 26.
1. Kassem NOF
2. Strongin RM
3. Stroup AM
4. Brinkman MC
5. El-Hellani A
6. Erythropel HC
7. Etemadi A
8. Goniewicz ML
9. Hansen EG
10. Kassem NO
11. Li D
12. Liles S
13. Noël A
14. Rezk-Hanna M
15. Wang Q
16. Rahman I
Toxicity of Waterpipe Tobacco Smoking: The Role of Flavors, Sweeteners, Humectants, and Charcoal.; Toxicological sciences : an official journal of the Society of Toxicology. 2024 Jul 22.
1. Liu P
2. Lou X
3. Xie Z
4. Shang C
5. Li D
Public Perceptions and Discussions of the US Food and Drug Administration's JUUL Ban Policy on Twitter: Observational Study.; JMIR formative research; Vol 8, pp. e51327. 2024 Jul 11.
1. Quinones Tavarez Z
2. Croft DP
3. Li D
4. Gill SR
5. Wojtovich AP
6. Rahman I
7. Ossip DJ
Fruit flavors in electronic cigarettes (ECIGs) are associated with nocturnal dry cough: A population longitudinal analysis.; PloS one; Vol 19(6), pp. e0306467. 2024 Jun 28.
1. Sun Y
2. Prabhu P
3. Li D
4. McIntosh S
5. Rahman I
Vaping: Public Health, Social Media, and Toxicity.; Online journal of public health informatics; Vol 16, pp. e53245. 2024 Apr 11.
1. Orfin RH
2. Uceda V
3. Gardner C
4. Estrada B
5. Tamayo E
6. Hernández-Torres R
7. Li D
8. Rahman I
9. McIntosh S
10. Ossip DJ
11. Cupertino AP
12. Cartujano-Barrera F
Recruiting Latino young adults into a vaping cessation study via social media: Feasibility and cost analysis.; Tobacco prevention & cessation; Vol 10. 2024 Apr 09.
1. Lara D
2. Alaniz-Cantú EI
3. Siddalingaiaha S
4. Oliveira I
5. Chávez-Iñiguez A
6. DeJesus E
7. Fuller D
8. Marquez DX
9. Vásquez E
10. Li D
11. McIntosh S
12. Ossip DJ
13. Cupertino AP
14. Cartujano-Barrera F
Actívatexto: Feasibility and Acceptability of a Mobile Intervention That Promotes Smoking Cessation and Physical Activity among Latinos.; Cancer research communications; Vol 4(4), pp. 1016-1023. 2024 Apr 08.
1. Zand MS
2. Spallina S
3. Ross A
4. Zandi K
5. Pawlowski A
6. Seplaki CL
7. Herington J
8. Corbett AM
9. Kaukeinen K
10. Holden-Wiltse J
11. Freedman EG
12. Alcantara L
13. Li D
14. Cameron A
15. Beaumont N
16. Dozier A
17. Dewhurst S
18. Foxe JJ
Ventilation during COVID-19 in a school for students with intellectual and developmental disabilities (IDD).; PloS one; Vol 19(4), pp. e0291840. 2024 Apr 03.
1. Zhou R
2. Xie Z
3. Tang Q
4. Li D
Social Network Analysis of e-Cigarette-Related Social Media Influencers on Twitter/X: Observational Study.; JMIR formative research; Vol 8, pp. e53666. 2024 Apr 01.
1. Liu AH
2. Hootman J
3. Li D
4. Xie Z
Public perceptions of synthetic cooling agents in electronic cigarettes on Twitter.; PloS one; Vol 19(3), pp. e0292412. 2024 Mar 12.
1. Ma S
2. Kaareen A
3. Park H
4. He Y
5. Jiang S
6. Qiu Z
7. Xie Z
8. Li D
9. Chen J
10. O'Connor RJ
11. Fong GT
12. Shang C
How to Identify e-Cigarette Brands Available in the United States During 2020-2022: Development and Usability Study.; JMIR formative research; Vol 8, pp. e47570. 2024 Feb 28.
1. Xie Z
2. Deng S
3. Liu P
4. Lou X
5. Xu C
6. Li D
Characterizing Anti-Vaping Posts for Effective Communication on Instagram Using Multimodal Deep Learning.; Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco; Vol 26(Supplement_1), pp. S43-S48. 2024 Feb 15.
1. Schulte PJ
2. Goldberg JD
3. Oster RA
4. Ambrosius WT
5. Bonner LB
6. Cabral H
7. Carter RE
8. Chen Y
9. Desai M
10. Li D
11. Lindsell CJ
12. Pomann GM
13. Slade E
14. Tosteson TD
15. Yu F
16. Spratt H
Peer review of clinical and translational research manuscripts: Perspectives from statistical collaborators.; Journal of clinical and translational science; Vol 8(1), pp. e20. 2024 Jan 04.
1. Shi H
2. Chen S
3. Meng FW
4. Ossip DJ
5. Yan C
6. Li D
Epigenome-wide DNA methylation profiling in comparison between pathological and physiological hypertrophy of human cardiomyocytes.; Frontiers in genetics; Vol 14, pp. 1264382. 2023 Sep 27.
1. Connolly M
2. Croft D
3. Ramírez-Palacios P
4. Cai X
5. Hill B
6. Orfin RH
7. Rivera MP
8. Wilson KM
9. Li D
10. McIntosh S
11. Ossip DJ
12. Cupertino AP
13. Cartujano-Barrera F
Are Black and Latino adolescents being asked if they use electronic cigarettes and advised not to use them? Results from a community-based survey.; Frontiers in public health; Vol 11, pp. 1222184. 2023 Aug 10.