URMC / Labs / Ermolenko Lab / Publications Recent Publications Lai CWErmolenko DN (2017 Dec 13). Ensemble and single-molecule FRET studies of protein synthesis. Methods (San Diego, Calif.). Ling CErmolenko DN (2016 Dec 06). Caught on Camera: Intermediates of Ribosome Recycling. Structure (London, England : 1993). Salsi EFarah EErmolenko DN (2016 May 22). EF-G Activation by Phosphate Analogs. Journal of molecular biology. Ling CErmolenko DN (2016 Apr 27). Structural insights into ribosome translocation. Wiley interdisciplinary reviews. RNA. Agrawal AASalsi EChatrikhi RHenderson SJenkins JLGreen MRErmolenko DNKielkopf CL (2016). An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal. Nature communications. Ling CErmolenko DN (2015 Dec 29). Initiation factor 2 stabilizes the ribosome in a semirotated conformation. Proceedings of the National Academy of Sciences of the United States of America. Ling CErmolenko DN (2015 Jun 2). Ribosome subunit joining frozen in time. Structure (London, England : 1993). Salsi EFarah ENetter ZDann JErmolenko DN (2015 Jan 30). Movement of elongation factor G between compact and extended conformations. Journal of molecular biology. Salsi EFarah EDann JErmolenko DN (2014 Oct 21). Following movement of domain IV of elongation factor G during ribosomal translocation. Proceedings of the National Academy of Sciences of the United States of America. Kurosaki TLi WHoque MPopp MWErmolenko DNTian BMaquat LE (2014 Sep 1). A post-translational regulatory switch on UPF1 controls targeted mRNA degradation. Genes & development. Brilot AFKorostelev AAErmolenko DNGrigorieff N (2013 Dec 24). Structure of the ribosome with elongation factor G trapped in the pretranslocation state. Proceedings of the National Academy of Sciences of the United States of America. Azpurua JKe ZChen IXZhang QErmolenko DNZhang ZDGorbunova VSeluanov A (2013 Oct 22). Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage. Proceedings of the National Academy of Sciences of the United States of America. Svidritskiy ELing CErmolenko DNKorostelev AA (2013 Jul 23). Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome. Proceedings of the National Academy of Sciences of the United States of America. Ermolenko DNCornish PVHa TNoller HF (2013 Feb). Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation. RNA (New York, N.Y.). Rudenko MIHolmes MRErmolenko DNLunt EJGerhardt SNoller HFDeamer DWHawkins ASchmidt H (2011 Nov 15). Controlled gating and electrical detection of single 50S ribosomal subunits through a solid-state nanopore in a microfluidic chip. Biosensors & bioelectronics. Ermolenko DNNoller HF (2011 Apr). mRNA translocation occurs during the second step of ribosomal intersubunit rotation. Nature structural & molecular biology. Cornish PVErmolenko DNStaple DWHoang LHickerson RPNoller HFHa T (2009 Feb 24). Following movement of the L1 stalk between three functional states in single ribosomes. Proceedings of the National Academy of Sciences of the United States of America. Korostelev AErmolenko DNNoller HF (2008 Dec). Structural dynamics of the ribosome. Current opinion in chemical biology. Cornish PVErmolenko DNNoller HFHa T (2008 Jun 6). Spontaneous intersubunit rotation in single ribosomes. Molecular cell. Spiegel PCErmolenko DNNoller HF (2007 Sep). Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome. RNA (New York, N.Y.). Ermolenko DNMajumdar ZKHickerson RPSpiegel PCClegg RMNoller HF (2007 Jul 13). Observation of intersubunit movement of the ribosome in solution using FRET. Journal of molecular biology. Ermolenko DNSpiegel PCMajumdar ZKHickerson RPClegg RMNoller HF (2007 Jun). The antibiotic viomycin traps the ribosome in an intermediate state of translocation. Nature structural & molecular biology. Ermolenko DNDangi BGvritishvili AGronenborn AMMakhatadze GI (2007 Mar). Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences. Biophysical chemistry. Ermolenko DNZherdev AVDzantiev BB (2005 Oct). Horseradish peroxidase renaturation is less efficient at lower protein concentrations. Protein and peptide letters. Ermolenko DNZherdev AVDzantiev BB (2004 Nov). Antibodies as specific chaperones. Biochemistry. Biokhimii︠a︡. Bezsudnova EIuZherdev AVErmolenko DNIakovleva IVSviridov VVPopov VODzantiev BB (2003 Sep). [Peroxidase refolding in the presence of specific antibodies]. Prikladnaia biokhimiia i mikrobiologiia. Ermolenko DNRichardson JMMakhatadze GI (2003 Jun). Noncharged amino acid residues at the solvent-exposed positions in the middle and at the C terminus of the alpha-helix have the same helical propensity. Protein science : a publication of the Protein Society. Makhatadze GILoladze VVErmolenko DNChen XThomas ST (2003 Apr 11). Contribution of surface salt bridges to protein stability: guidelines for protein engineering. Journal of molecular biology. Ermolenko DNMakhatadze GI (2002 Nov). Bacterial cold-shock proteins. Cellular and molecular life sciences : CMLS. Ermolenko DNThomas STAurora RGronenborn AMMakhatadze GI (2002 Sep 6). Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices. Journal of molecular biology. Loladze VVErmolenko DNMakhatadze GI (2002 Jul 5). Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior. Journal of molecular biology. Ermolenko DNZherdev AVDzantiev BBPopov VO (2002 Mar 8). Antiperoxidase antibodies enhance refolding of horseradish peroxidase. Biochemical and biophysical research communications. Loladze VVErmolenko DNMakhatadze GI (2001 Jul). Heat capacity changes upon burial of polar and nonpolar groups in proteins. Protein science : a publication of the Protein Society.