URMC / Labs / Gill Lab / Publications Publications Farnsworth CWSchott EMBenvie AMZukoski JKates SLSchwarz EMGill SRZuscik MJMooney RA (2017 Dec 11). Obesity/type 2 diabetes increases inflammation, periosteal reactive bone formation and osteolysis during Staphylococcus aureus implant-associated bone infection. Journal of orthopaedic research : official publication of the Orthopaedic Research Society. Grier AQiu XBandyopadhyay SHolden-Wiltse JKessler HAGill ALHamilton BHuyck HMisra SMariani TJRyan RMScholer LScheible KMLee YHCaserta MTPryhuber GSGill SR (2017 Dec 11). Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth. Microbiome. Caito SWJackson BPPunshon TScrimale TGrier AGill SRLove TMWatson GEvan Wijngaarden ERand MD (2017 Nov 14). Variation in Methylmercury Metabolism and Elimination Status (MerMES) in Humans Following Fish Consumption. Toxicological sciences : an official journal of the Society of Toxicology. Bhattacharya SRosenberg AFPeterson DRGrzesik KBaran AMAshton JMGill SRCorbett AMHolden-Wiltse JTopham DJWalsh EEMariani TJFalsey AR (2017 Jul 26). Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness. Scientific reports. Farnsworth CWSchott EMJensen SEZukoski JBenvie AMRefaai MAKates SLSchwarz EMZuscik MJGill SRMooney RA (2017 Mar 20). Adaptive upregulation of Clumping Factor A (ClfA) by S. aureus in the obese, type 2 diabetic host mediates increased virulence. Infection and immunity. Caserta MTYang HGill SRHolden-Wiltse JPryhuber G (2017 Mar). Viral Respiratory Infections in Preterm Infants during and after Hospitalization. The Journal of pediatrics. Nakatsuji TChen THNarala SChun KATwo AMYun TShafiq FKotol PFBouslimani AMelnik AVLatif HKim JNLockhart AArtis KDavid GTaylor PStreib JDorrestein PCGrier AGill SRZengler KHata TRLeung DYGallo RL (2017 Feb 22). Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis. Science translational medicine. Chu CYQiu XWang LBhattacharya SLofthus GCorbett AHolden-Wiltse JGrier ATesini BGill SRFalsey ARCaserta MTWalsh EEMariani TJ (2016). The Healthy Infant Nasal Transcriptome: A Benchmark Study. Scientific reports. Merkley MABice TCGrier AStrohl AMMan LXGill SR (2015 Oct). The effect of antibiotics on the microbiome in acute exacerbations of chronic rhinosinusitis. International forum of allergy & rhinology. Strange CSenior RMSciurba FO'Neal SMorris AWisniewski SRBowler RHochheiser HSBecich MJZhang YLeader JKMethé BAKaminski NSandhaus RA (2015 Oct). Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol. Annals of the American Thoracic Society. Moller DRKoth LLMaier LAMorris ADrake WRossman MLeader JKCollman RGHamzeh NSweiss NJZhang YO'Neal SSenior RMBecich MHochheiser HSKaminski NWisniewski SRGibson KF (2015 Oct). Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol. Annals of the American Thoracic Society. Sharma-Kuinkel BKMongodin EFMyers JRVore KLCanfield GSFraser CMRude THFowler VGGill SR (2015 Sep). Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections. Open forum infectious diseases. Lenhard JRBrown TRybak MJMeaney CJNorgard NBBulman ZPBrazeau DAGill SRTsuji BT (2015). Sequential Evolution of Vancomycin-Intermediate Resistance Alters Virulence in Staphylococcus aureus: Pharmacokinetic/Pharmacodynamic Targets for Vancomycin Exposure. Antimicrobial agents and chemotherapy. Dardas MGill SRGrier APryhuber GSGill ALLee YHGuillet R (2014 Aug). The impact of postnatal antibiotics on the preterm intestinal microbiome. Pediatric research. Edholm ESAlbertorio Saez LMGill ALGill SRGrayfer LHaynes NMyers JRRobert J (2013 Aug 27). Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians. Proceedings of the National Academy of Sciences of the United States of America. Russo TAGill SR (2013 Mar). Draft Genome Sequence of the Hypervirulent Klebsiella pneumoniae Strain hvKP1, Isolated in Buffalo, New York. Genome announcements. Zhu LBaker SSGill CLiu WAlkhouri RBaker RDGill SR (2013 Feb). Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH. Hepatology (Baltimore, Md.). Canfield GSSchwingel JMFoley MHVore KLBoonanantanasarn KGill ALSutton MDGill SR (2013 Feb). Evolution in fast forward: a potential role for mutators in accelerating Staphylococcus aureus pathoadaptation. Journal of bacteriology. Boonanantanasarn KGill ALYap YJayaprakash VSullivan MAGill SR (2012 Oct). Enterococcus faecalis enhances cell proliferation through hydrogen peroxide-mediated epidermal growth factor receptor activation. Infection and immunity. Nikitkova AEHaase EMVickerman MMGill SRScannapieco FA (2012 Mar). Response of fatty acid synthesis genes to the binding of human salivary amylase by Streptococcus gordonii. Applied and environmental microbiology. Kos VNDesjardins CAGriggs ACerqueira GVan Tonder AHolden MTGodfrey PPalmer KLBodi KMongodin EFWortman JFeldgarden MLawley TGill SRHaas BJBirren BGilmore MS (2012). Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States. mBio. Jayaprakash VReid MHatton EMerzianu MRigual NMarshall JGill SFrustino JWilding GLoree TPopat SSullivan M (2011 Nov). Human papillomavirus types 16 and 18 in epithelial dysplasia of oral cavity and oropharynx: a meta-analysis, 1985-2010. Oral oncology. Faden HGill SLesse A (2011 Oct). Impact of management and bacterial genomics on outcomes of Staphylococcus aureus bacteremia in children. Clinical pediatrics. Nair DMemmi GHernandez DBard JBeaume MGill SFrancois PCheung AL (2011 May). Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain. Journal of bacteriology. Glasner JDYang CHReverchon SHugouvieux-Cotte-Pattat NCondemine GBohin JPVan Gijsegem FYang SFranza TExpert DPlunkett GSan Francisco MJCharkowski AOPy BBell KRauscher LRodriguez-Palenzuela PToussaint AHoleva MCHe SYDouet VBoccara MBlanco CToth IAnderson BDBiehl BSMau BFlynn SMBarras FLindeberg MBirch PRTsuyumu SShi XHibbing MYap MNCarpentier MDassa EUmehara MKim JFRusch MSoni PMayhew GFFouts DEGill SRBlattner FRKeen NTPerna NT (2011 Apr). Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of bacteriology. Madhusoodanan JSeo KSRemortel BPark JYHwang SYFox LKPark YHDeobald CFWang DLiu SDaugherty SCGill ALBohach GAGill SR (2011 Apr). An Enterotoxin-Bearing Pathogenicity Island in Staphylococcus epidermidis. Journal of bacteriology. Gill SRMcIntyre LMNelson CLRemortel BRude TReller LBFowler VG (2011). Potential associations between severity of infection and the presence of virulence-associated genes in clinical strains of Staphylococcus aureus. PloS one. Christie GEMatthews AMKing DGLane KDOlivarez NPTallent SMGill SRNovick RP (2010 Nov 25). The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α--implications for the specificity of SaPI mobilization. Virology. Gerrish RSGill SR (2010 Nov). Tailed pooled suppression subtractive hybridization (PSSH) adaptors do not alter efficiency. Antonie van Leeuwenhoek. Bik EMLong CDArmitage GCLoomer PEmerson JMongodin EFNelson KEGill SRFraser-Liggett CMRelman DA (2010 Aug). Bacterial diversity in the oral cavity of 10 healthy individuals. The ISME journal. Gerrish RSGill ALFowler VGGill SR (2010 Apr). Development of pooled suppression subtractive hybridization to analyze the pangenome of Staphylococcus aureus. Journal of microbiological methods. Qu JLesse AJBrauer ALCao JGill SRMurphy TF (2010). Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses. BMC microbiology. Jayaprakash VSullivan MMerzianu MRigual NRLoree TRPopat SRMoysich KBRamananda SJohnson TMarshall JRHutson ADMang TSWilson BCGill SRFrustino JBogaards AReid ME (2009 Nov). Autofluorescence-guided surveillance for oral cancer. Cancer prevention research (Philadelphia, Pa.). Lin EAZhang XSLevine SMGill SRFalush DBlaser MJ (2009 Mar). Natural transformation of helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size. PLoS pathogens. Heo SMHaase EMLesse AJGill SRScannapieco FA (2008 Dec 15). Genetic relationships between respiratory pathogens isolated from dental plaque and bronchoalveolar lavage fluid from patients in the intensive care unit undergoing mechanical ventilation. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. Jakubovics NSGill SRVickerman MMKolenbrander PE (2008 Dec). Role of hydrogen peroxide in competition and cooperation between Streptococcus gordonii and Actinomyces naeslundii. FEMS microbiology ecology. Adams MDGoglin KMolyneaux NHujer KMLavender HJamison JJMacDonald IJMartin KMRusso TCampagnari AAHujer AMBonomo RAGill SR (2008 Dec). Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. Journal of bacteriology. Russo TABeanan JMOlson RMacDonald ULuke NRGill SRCampagnari AA (2008 Aug). Rat pneumonia and soft-tissue infection models for the study of Acinetobacter baumannii biology. Infection and immunity. Jakubovics NSGill SRIobst SEVickerman MMKolenbrander PE (2008 May). Regulation of gene expression in a mixed-genus community: stabilized arginine biosynthesis in Streptococcus gordonii by coaggregation with Actinomyces naeslundii. Journal of bacteriology. Vickerman MMIobst SJesionowski AMGill SR (2007 Nov). Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide. Journal of bacteriology. Fowler VGNelson CLMcIntyre LMKreiswirth BNMonk AArcher GLFederspiel JNaidich SRemortel BRude TBrown PReller LBCorey GRGill SR (2007 Sep 1). Potential associations between hematogenous complications and bacterial genotype in Staphylococcus aureus infection. The Journal of infectious diseases. Rasko DARosovitz MJØkstad OAFouts DEJiang LCer RZKolstø ABGill SRRavel J (2007 Jan). Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1. Journal of bacteriology. Vickerman MMBrossard KAFunk DBJesionowski AMGill SR (2007 Jan). Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections. Journal of medical microbiology. Gardete SWu SWGill STomasz A (2006 Oct). Role of VraSR in antibiotic resistance and antibiotic-induced stress response in Staphylococcus aureus. Antimicrobial agents and chemotherapy. Pieper RGatlin-Bunai CLMongodin EFParmar PPHuang STClark DJFleischmann RDGill SRPeterson SN (2006 Aug). Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin. Proteomics. Gill SRPop MDeboy RTEckburg PBTurnbaugh PJSamuel BSGordon JIRelman DAFraser-Liggett CMNelson KE (2006 Jun 2). Metagenomic analysis of the human distal gut microbiome. Science (New York, N.Y.). Fouts DERasko DACer RZJiang LFedorova NBShvartsbeyn AVamathevan JJTallon LAlthoff RArbogast TSFadrosh DWRead TDGill SR (2006 May). Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry. Journal of bacteriology. Diep BAGill SRChang RFPhan THChen JHDavidson MGLin FLin JCarleton HAMongodin EFSensabaugh GFPerdreau-Remington F (2006 Mar 4). Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus. Lancet (London, England). Gatlin CLPieper RHuang STMongodin EGebregeorgis EParmar PPClark DJAlami HPapazisi LFleischmann RDGill SRPeterson SN (2006 Mar). Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus. Proteomics. Bik EMEckburg PBGill SRNelson KEPurdom EAFrancois FPerez-Perez GBlaser MJRelman DA (2006 Jan 17). Molecular analysis of the bacterial microbiota in the human stomach. Proceedings of the National Academy of Sciences of the United States of America.