URMC / Labs / Gill Lab / Publications Publications Schott EMFarnsworth CWGrier ALillis JASoniwala SDadourian GHBell RDDoolittle MLVillani DAAwad HKetz JPKamal FAckert-Bicknell CAshton JMGill SRMooney RAZuscik MJ Targeting the gut microbiome to treat the osteoarthritis of obesity.; JCI insight; Vol 38. 2018 Apr 19. Rieth KKSGill SRLott-Limbach AAMerkley MABotero NAllen PDMiller MC Prevalence of High-Risk Human Papillomavirus in Tonsil Tissue in Healthy Adults and Colocalization in Biofilm of Tonsillar Crypts.; JAMA otolaryngology-- head & neck surgery. 2018 Jan 25. Farnsworth CWSchott EMBenvie AMZukoski JKates SLSchwarz EMGill SRZuscik MJMooney RA Obesity/type 2 diabetes increases inflammation, periosteal reactive bone formation and osteolysis during Staphylococcus aureus implant-associated bone infection.; Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2017 Dec 11. Grier AQiu XBandyopadhyay SHolden-Wiltse JKessler HAGill ALHamilton BHuyck HMisra SMariani TJRyan RMScholer LScheible KMLee YHCaserta MTPryhuber GSGill SR Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth.; Microbiome; Vol 51. 2017 Dec 11. Caito SWJackson BPPunshon TScrimale TGrier AGill SRLove TMWatson GEvan Wijngaarden ERand MD Variation in Methylmercury Metabolism and Elimination Status (MerMES) in Humans Following Fish Consumption.; Toxicological sciences : an official journal of the Society of Toxicology. 2017 Nov 14. Bhattacharya SRosenberg AFPeterson DRGrzesik KBaran AMAshton JMGill SRCorbett AMHolden-Wiltse JTopham DJWalsh EEMariani TJFalsey AR Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness.; Scientific reports; Vol 71. 2017 Jul 26. Farnsworth CWSchott EMJensen SEZukoski JBenvie AMRefaai MAKates SLSchwarz EMZuscik MJGill SRMooney RA Adaptive upregulation of Clumping Factor A (ClfA) by S. aureus in the obese, type 2 diabetic host mediates increased virulence.; Infection and immunity. 2017 Mar 20. Caserta MTYang HGill SRHolden-Wiltse JPryhuber G Viral Respiratory Infections in Preterm Infants during and after Hospitalization.; The Journal of pediatrics; Vol 182. 2017 Mar. Nakatsuji TChen THNarala SChun KATwo AMYun TShafiq FKotol PFBouslimani AMelnik AVLatif HKim JNLockhart AArtis KDavid GTaylor PStreib JDorrestein PCGrier AGill SRZengler KHata TRLeung DYGallo RL Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis.; Science translational medicine; Vol 9378. 2017 Feb 22. Chu CYQiu XWang LBhattacharya SLofthus GCorbett AHolden-Wiltse JGrier ATesini BGill SRFalsey ARCaserta MTWalsh EEMariani TJ The Healthy Infant Nasal Transcriptome: A Benchmark Study.; Scientific reports; Vol 6. 2016. Merkley MABice TCGrier AStrohl AMMan LXGill SR The effect of antibiotics on the microbiome in acute exacerbations of chronic rhinosinusitis.; International forum of allergy & rhinology; Vol 510. 2015 Oct. Strange CSenior RMSciurba FO'Neal SMorris AWisniewski SRBowler RHochheiser HSBecich MJZhang YLeader JKMethé BAKaminski NSandhaus RA Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol.; Annals of the American Thoracic Society; Vol 1210. 2015 Oct. Moller DRKoth LLMaier LAMorris ADrake WRossman MLeader JKCollman RGHamzeh NSweiss NJZhang YO'Neal SSenior RMBecich MHochheiser HSKaminski NWisniewski SRGibson KF Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol.; Annals of the American Thoracic Society; Vol 1210. 2015 Oct. Sharma-Kuinkel BKMongodin EFMyers JRVore KLCanfield GSFraser CMRude THFowler VGGill SR Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections.; Open forum infectious diseases; Vol 23. 2015 Sep. Lenhard JRBrown TRybak MJMeaney CJNorgard NBBulman ZPBrazeau DAGill SRTsuji BT Sequential Evolution of Vancomycin-Intermediate Resistance Alters Virulence in Staphylococcus aureus: Pharmacokinetic/Pharmacodynamic Targets for Vancomycin Exposure.; Antimicrobial agents and chemotherapy; Vol 603. 2015. Dardas MGill SRGrier APryhuber GSGill ALLee YHGuillet R The impact of postnatal antibiotics on the preterm intestinal microbiome.; Pediatric research; Vol 762. 2014 Aug. Edholm ESAlbertorio Saez LMGill ALGill SRGrayfer LHaynes NMyers JRRobert J Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians.; Proceedings of the National Academy of Sciences of the United States of America; Vol 11035. 2013 Aug 27. Russo TAGill SR Draft Genome Sequence of the Hypervirulent Klebsiella pneumoniae Strain hvKP1, Isolated in Buffalo, New York.; Genome announcements; Vol 12. 2013 Mar. Zhu LBaker SSGill CLiu WAlkhouri RBaker RDGill SR Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH.; Hepatology (Baltimore, Md.); Vol 572. 2013 Feb. Canfield GSSchwingel JMFoley MHVore KLBoonanantanasarn KGill ALSutton MDGill SR Evolution in fast forward: a potential role for mutators in accelerating Staphylococcus aureus pathoadaptation.; Journal of bacteriology; Vol 1953. 2013 Feb. Boonanantanasarn KGill ALYap YJayaprakash VSullivan MAGill SR Enterococcus faecalis enhances cell proliferation through hydrogen peroxide-mediated epidermal growth factor receptor activation.; Infection and immunity; Vol 8010. 2012 Oct. Nikitkova AEHaase EMVickerman MMGill SRScannapieco FA Response of fatty acid synthesis genes to the binding of human salivary amylase by Streptococcus gordonii.; Applied and environmental microbiology; Vol 786. 2012 Mar. Kos VNDesjardins CAGriggs ACerqueira GVan Tonder AHolden MTGodfrey PPalmer KLBodi KMongodin EFWortman JFeldgarden MLawley TGill SRHaas BJBirren BGilmore MS Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.; mBio; Vol 33. 2012. Jayaprakash VReid MHatton EMerzianu MRigual NMarshall JGill SFrustino JWilding GLoree TPopat SSullivan M Human papillomavirus types 16 and 18 in epithelial dysplasia of oral cavity and oropharynx: a meta-analysis, 1985-2010.; Oral oncology; Vol 4711. 2011 Nov. Faden HGill SLesse A Impact of management and bacterial genomics on outcomes of Staphylococcus aureus bacteremia in children.; Clinical pediatrics; Vol 5010. 2011 Oct. Nair DMemmi GHernandez DBard JBeaume MGill SFrancois PCheung AL Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain.; Journal of bacteriology; Vol 1939. 2011 May. Glasner JDYang CHReverchon SHugouvieux-Cotte-Pattat NCondemine GBohin JPVan Gijsegem FYang SFranza TExpert DPlunkett GSan Francisco MJCharkowski AOPy BBell KRauscher LRodriguez-Palenzuela PToussaint AHoleva MCHe SYDouet VBoccara MBlanco CToth IAnderson BDBiehl BSMau BFlynn SMBarras FLindeberg MBirch PRTsuyumu SShi XHibbing MYap MNCarpentier MDassa EUmehara MKim JFRusch MSoni PMayhew GFFouts DEGill SRBlattner FRKeen NTPerna NT Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.; Journal of bacteriology; Vol 1938. 2011 Apr. Madhusoodanan JSeo KSRemortel BPark JYHwang SYFox LKPark YHDeobald CFWang DLiu SDaugherty SCGill ALBohach GAGill SR An Enterotoxin-Bearing Pathogenicity Island in Staphylococcus epidermidis.; Journal of bacteriology; Vol 1938. 2011 Apr. Gill SRMcIntyre LMNelson CLRemortel BRude TReller LBFowler VG Potential associations between severity of infection and the presence of virulence-associated genes in clinical strains of Staphylococcus aureus.; PloS one; Vol 64. 2011. Christie GEMatthews AMKing DGLane KDOlivarez NPTallent SMGill SRNovick RP The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α--implications for the specificity of SaPI mobilization.; Virology; Vol 4072. 2010 Nov 25. Gerrish RSGill SR Tailed pooled suppression subtractive hybridization (PSSH) adaptors do not alter efficiency.; Antonie van Leeuwenhoek; Vol 984. 2010 Nov. Bik EMLong CDArmitage GCLoomer PEmerson JMongodin EFNelson KEGill SRFraser-Liggett CMRelman DA Bacterial diversity in the oral cavity of 10 healthy individuals.; The ISME journal; Vol 48. 2010 Aug. Gerrish RSGill ALFowler VGGill SR Development of pooled suppression subtractive hybridization to analyze the pangenome of Staphylococcus aureus.; Journal of microbiological methods; Vol 811. 2010 Apr. Qu JLesse AJBrauer ALCao JGill SRMurphy TF Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses.; BMC microbiology; Vol 10. 2010. Jayaprakash VSullivan MMerzianu MRigual NRLoree TRPopat SRMoysich KBRamananda SJohnson TMarshall JRHutson ADMang TSWilson BCGill SRFrustino JBogaards AReid ME Autofluorescence-guided surveillance for oral cancer.; Cancer prevention research (Philadelphia, Pa.); Vol 211. 2009 Nov. Lin EAZhang XSLevine SMGill SRFalush DBlaser MJ Natural transformation of helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size.; PLoS pathogens; Vol 53. 2009 Mar. Heo SMHaase EMLesse AJGill SRScannapieco FA Genetic relationships between respiratory pathogens isolated from dental plaque and bronchoalveolar lavage fluid from patients in the intensive care unit undergoing mechanical ventilation.; Clinical infectious diseases : an official publication of the Infectious Diseases Society of America; Vol 4712. 2008 Dec 15. Jakubovics NSGill SRVickerman MMKolenbrander PE Role of hydrogen peroxide in competition and cooperation between Streptococcus gordonii and Actinomyces naeslundii.; FEMS microbiology ecology; Vol 663. 2008 Dec. Adams MDGoglin KMolyneaux NHujer KMLavender HJamison JJMacDonald IJMartin KMRusso TCampagnari AAHujer AMBonomo RAGill SR Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii.; Journal of bacteriology; Vol 19024. 2008 Dec. Russo TABeanan JMOlson RMacDonald ULuke NRGill SRCampagnari AA Rat pneumonia and soft-tissue infection models for the study of Acinetobacter baumannii biology.; Infection and immunity; Vol 768. 2008 Aug. Jakubovics NSGill SRIobst SEVickerman MMKolenbrander PE Regulation of gene expression in a mixed-genus community: stabilized arginine biosynthesis in Streptococcus gordonii by coaggregation with Actinomyces naeslundii.; Journal of bacteriology; Vol 19010. 2008 May. Vickerman MMIobst SJesionowski AMGill SR Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide.; Journal of bacteriology; Vol 18921. 2007 Nov. Fowler VGNelson CLMcIntyre LMKreiswirth BNMonk AArcher GLFederspiel JNaidich SRemortel BRude TBrown PReller LBCorey GRGill SR Potential associations between hematogenous complications and bacterial genotype in Staphylococcus aureus infection.; The Journal of infectious diseases; Vol 1965. 2007 Sep 1. Rasko DARosovitz MJØkstad OAFouts DEJiang LCer RZKolstø ABGill SRRavel J Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1.; Journal of bacteriology; Vol 1891. 2007 Jan. Vickerman MMBrossard KAFunk DBJesionowski AMGill SR Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections.; Journal of medical microbiology; Vol 56Pt 1. 2007 Jan. Gardete SWu SWGill STomasz A Role of VraSR in antibiotic resistance and antibiotic-induced stress response in Staphylococcus aureus.; Antimicrobial agents and chemotherapy; Vol 5010. 2006 Oct. Pieper RGatlin-Bunai CLMongodin EFParmar PPHuang STClark DJFleischmann RDGill SRPeterson SN Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin.; Proteomics; Vol 615. 2006 Aug. Gill SRPop MDeboy RTEckburg PBTurnbaugh PJSamuel BSGordon JIRelman DAFraser-Liggett CMNelson KE Metagenomic analysis of the human distal gut microbiome.; Science (New York, N.Y.); Vol 3125778. 2006 Jun 2. Fouts DERasko DACer RZJiang LFedorova NBShvartsbeyn AVamathevan JJTallon LAlthoff RArbogast TSFadrosh DWRead TDGill SR Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry.; Journal of bacteriology; Vol 1889. 2006 May. Diep BAGill SRChang RFPhan THChen JHDavidson MGLin FLin JCarleton HAMongodin EFSensabaugh GFPerdreau-Remington F Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus.; Lancet (London, England); Vol 3679512. 2006 Mar 4.