Publications

• 1. Schott EM
  2. Farnsworth CW
  3. Grier A
  4. Lillis JA
  5. Soniwala S
  6. Dadourian GH
  7. Bell RD
  8. Doolittle ML
  9. Villani DA
  10. Awad H
  11. Ketz JP
  12. Kamal F
  13. Ackert-Bicknell C
  14. Ashton JM
  15. Gill SR
  16. Mooney RA
  17. Zuscik MJ
  Targeting the gut microbiome to treat the osteoarthritis of obesity.; JCI insight; Vol 38. 2018 Apr 19.
• 1. Rieth KKS
  2. Gill SR
  3. Lott-Limbach AA
  4. Merkley MA
  5. Botero N
  6. Allen PD
  7. Miller MC
  Prevalence of High-Risk Human Papillomavirus in Tonsil Tissue in Healthy Adults and Colocalization in Biofilm of Tonsillar Crypts.; JAMA otolaryngology-- head & neck surgery. 2018 Jan 25.
• 1. Farnsworth CW
  2. Schott EM
  3. Benvie AM
  4. Zukoski J
  5. Kates SL
  6. Schwarz EM
  7. Gill SR
  8. Zuscik MJ
  9. Mooney RA
  Obesity/type 2 diabetes increases inflammation, periosteal reactive bone formation and osteolysis during Staphylococcus aureus implant-associated bone infection.; Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2017 Dec 11.
• 1. Grier A
  2. Qiu X
  3. Bandyopadhyay S
  4. Holden-Wiltse J
  5. Kessler HA
  6. Gill AL
  7. Hamilton B
  8. Huyck H
  9. Misra S
  10. Mariani TJ
  11. Ryan RM
  12. Scholer L
  13. Scheible KM
  14. Lee YH
  15. Caserta MT
  16. Pryhuber GS
  17. Gill SR
  Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth.; Microbiome; Vol 51. 2017 Dec 11.
• 1. Caito SW
  2. Jackson BP
  3. Punshon T
  4. Scrimale T
  5. Grier A
  6. Gill SR
  7. Love TM
  8. Watson GE
  9. van Wijngaarden E
  10. Rand MD
  Variation in Methylmercury Metabolism and Elimination Status (MerMES) in Humans Following Fish Consumption.; Toxicological sciences : an official journal of the Society of Toxicology. 2017 Nov 14.
• 1. Bhattacharya S
  2. Rosenberg AF
  3. Peterson DR
  4. Grzesik K
  5. Baran AM
  6. Ashton JM
  7. Gill SR
  8. Corbett AM
  9. Holden-Wiltse J
  10. Topham DJ
  11. Walsh EE
  12. Mariani TJ
  13. Falsey AR
  Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness.; Scientific reports; Vol 71. 2017 Jul 26.
• 1. Farnsworth CW
  2. Schott EM
  3. Jensen SE
  4. Zukoski J
  5. Benvie AM
  6. Refaai MA
  7. Kates SL
  8. Schwarz EM
  9. Zuscik MJ
  10. Gill SR
  11. Mooney RA
  Adaptive upregulation of Clumping Factor A (ClfA) by S. aureus in the obese, type 2 diabetic host mediates increased virulence.; Infection and immunity. 2017 Mar 20.
• 1. Caserta MT
  2. Yang H
  3. Gill SR
  4. Holden-Wiltse J
  5. Pryhuber G
  Viral Respiratory Infections in Preterm Infants during and after Hospitalization.; The Journal of pediatrics; Vol 182. 2017 Mar.
• 1. Nakatsuji T
  2. Chen TH
  3. Narala S
  4. Chun KA
  5. Two AM
  6. Yun T
  7. Shafiq F
  8. Kotol PF
  9. Bouslimani A
  10. Melnik AV
  11. Latif H
  12. Kim JN
  13. Lockhart A
  14. Artis K
  15. David G
  16. Taylor P
  17. Streib J
  18. Dorrestein PC
  19. Grier A
  20. Gill SR
  21. Zengler K
  22. Hata TR
  23. Leung DY
  24. Gallo RL
  Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis.; Science translational medicine; Vol 9378. 2017 Feb 22.
• 1. Chu CY
  2. Qiu X
  3. Wang L
  4. Bhattacharya S
  5. Lofthus G
  6. Corbett A
  7. Holden-Wiltse J
  8. Grier A
  9. Tesini B
  10. Gill SR
  11. Falsey AR
  12. Caserta MT
  13. Walsh EE
  14. Mariani TJ
  The Healthy Infant Nasal Transcriptome: A Benchmark Study.; Scientific reports; Vol 6. 2016.
• 1. Merkley MA
  2. Bice TC
  3. Grier A
  4. Strohl AM
  5. Man LX
  6. Gill SR
  The effect of antibiotics on the microbiome in acute exacerbations of chronic rhinosinusitis.; International forum of allergy & rhinology; Vol 510. 2015 Oct.
• 1. Strange C
  2. Senior RM
  3. Sciurba F
  4. O'Neal S
  5. Morris A
  6. Wisniewski SR
  7. Bowler R
  8. Hochheiser HS
  9. Becich MJ
  10. Zhang Y
  11. Leader JK
  12. Methé BA
  13. Kaminski N
  14. Sandhaus RA
  Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol.; Annals of the American Thoracic Society; Vol 1210. 2015 Oct.
• 1. Moller DR
  2. Koth LL
  3. Maier LA
  4. Morris A
  5. Drake W
  6. Rossman M
  7. Leader JK
  8. Collman RG
  9. Hamzeh N
  10. Sweiss NJ
  11. Zhang Y
  12. O'Neal S
  13. Senior RM
  14. Becich M
  15. Hochheiser HS
  16. Kaminski N
  17. Wisniewski SR
  18. Gibson KF
  Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol.; Annals of the American Thoracic Society; Vol 1210. 2015 Oct.
• 1. Sharma-Kuinkel BK
  2. Mongodin EF
  3. Myers JR
  4. Vore KL
  5. Canfield GS
  6. Fraser CM
  7. Rude TH
  8. Fowler VG
  9. Gill SR
  Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections.; Open forum infectious diseases; Vol 23. 2015 Sep.
• 1. Lenhard JR
  2. Brown T
  3. Rybak MJ
  4. Meaney CJ
  5. Norgard NB
  6. Bulman ZP
  7. Brazeau DA
  8. Gill SR
  9. Tsuji BT
  Sequential Evolution of Vancomycin-Intermediate Resistance Alters Virulence in Staphylococcus aureus: Pharmacokinetic/Pharmacodynamic Targets for Vancomycin Exposure.; Antimicrobial agents and chemotherapy; Vol 603. 2015.
• 1. Dardas M
  2. Gill SR
  3. Grier A
  4. Pryhuber GS
  5. Gill AL
  6. Lee YH
  7. Guillet R
  The impact of postnatal antibiotics on the preterm intestinal microbiome.; Pediatric research; Vol 762. 2014 Aug.
• 1. Edholm ES
  2. Albertorio Saez LM
  3. Gill AL
  4. Gill SR
  5. Grayfer L
  6. Haynes N
  7. Myers JR
  8. Robert J
  Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians.; Proceedings of the National Academy of Sciences of the United States of America; Vol 11035. 2013 Aug 27.
• 1. Russo TA
  2. Gill SR
  Draft Genome Sequence of the Hypervirulent Klebsiella pneumoniae Strain hvKP1, Isolated in Buffalo, New York.; Genome announcements; Vol 12. 2013 Mar.
• 1. Zhu L
  2. Baker SS
  3. Gill C
  4. Liu W
  5. Alkhouri R
  6. Baker RD
  7. Gill SR
  Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH.; Hepatology (Baltimore, Md.); Vol 572. 2013 Feb.
• 1. Canfield GS
  2. Schwingel JM
  3. Foley MH
  4. Vore KL
  5. Boonanantanasarn K
  6. Gill AL
  7. Sutton MD
  8. Gill SR
  Evolution in fast forward: a potential role for mutators in accelerating Staphylococcus aureus pathoadaptation.; Journal of bacteriology; Vol 1953. 2013 Feb.
• 1. Boonanantanasarn K
  2. Gill AL
  3. Yap Y
  4. Jayaprakash V
  5. Sullivan MA
  6. Gill SR
  Enterococcus faecalis enhances cell proliferation through hydrogen peroxide-mediated epidermal growth factor receptor activation.; Infection and immunity; Vol 8010. 2012 Oct.
• 1. Nikitkova AE
  2. Haase EM
  3. Vickerman MM
  4. Gill SR
  5. Scannapieco FA
  Response of fatty acid synthesis genes to the binding of human salivary amylase by Streptococcus gordonii.; Applied and environmental microbiology; Vol 786. 2012 Mar.
• 1. Kos VN
  2. Desjardins CA
  3. Griggs A
  4. Cerqueira G
  5. Van Tonder A
  6. Holden MT
  7. Godfrey P
  8. Palmer KL
  9. Bodi K
  10. Mongodin EF
  11. Wortman J
  12. Feldgarden M
  13. Lawley T
  14. Gill SR
  15. Haas BJ
  16. Birren B
  17. Gilmore MS
  Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.; mBio; Vol 33. 2012.
• 1. Jayaprakash V
  2. Reid M
  3. Hatton E
  4. Merzianu M
  5. Rigual N
  6. Marshall J
  7. Gill S
  8. Frustino J
  9. Wilding G
  10. Loree T
  11. Popat S
  12. Sullivan M
  Human papillomavirus types 16 and 18 in epithelial dysplasia of oral cavity and oropharynx: a meta-analysis, 1985-2010.; Oral oncology; Vol 4711. 2011 Nov.
• 1. Faden H
  2. Gill S
  3. Lesse A
  Impact of management and bacterial genomics on outcomes of Staphylococcus aureus bacteremia in children.; Clinical pediatrics; Vol 5010. 2011 Oct.
• 1. Nair D
  2. Memmi G
  3. Hernandez D
  4. Bard J
  5. Beaume M
  6. Gill S
  7. Francois P
  8. Cheung AL
  Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain.; Journal of bacteriology; Vol 1939. 2011 May.
• 1. Glasner JD
  2. Yang CH
  3. Reverchon S
  4. Hugouvieux-Cotte-Pattat N
  5. Condemine G
  6. Bohin JP
  7. Van Gijsegem F
  8. Yang S
  9. Franza T
  10. Expert D
  11. Plunkett G
  12. San Francisco MJ
  13. Charkowski AO
  14. Py B
  15. Bell K
  16. Rauscher L
  17. Rodriguez-Palenzuela P
  18. Toussaint A
  19. Holeva MC
  20. He SY
  21. Douet V
  22. Boccara M
  23. Blanco C
  24. Toth I
  25. Anderson BD
  26. Biehl BS
  27. Mau B
  28. Flynn SM
  29. Barras F
  30. Lindeberg M
  31. Birch PR
  32. Tsuyumu S
  33. Shi X
  34. Hibbing M
  35. Yap MN
  36. Carpentier M
  37. Dassa E
  38. Umehara M
  39. Kim JF
  40. Rusch M
  41. Soni P
  42. Mayhew GF
  43. Fouts DE
  44. Gill SR
  45. Blattner FR
  46. Keen NT
  47. Perna NT
  Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.; Journal of bacteriology; Vol 1938. 2011 Apr.
• 1. Madhusoodanan J
  2. Seo KS
  3. Remortel B
  4. Park JY
  5. Hwang SY
  6. Fox LK
  7. Park YH
  8. Deobald CF
  9. Wang D
  10. Liu S
  11. Daugherty SC
  12. Gill AL
  13. Bohach GA
  14. Gill SR
  An Enterotoxin-Bearing Pathogenicity Island in Staphylococcus epidermidis.; Journal of bacteriology; Vol 1938. 2011 Apr.
• 1. Gill SR
  2. McIntyre LM
  3. Nelson CL
  4. Remortel B
  5. Rude T
  6. Reller LB
  7. Fowler VG
  Potential associations between severity of infection and the presence of virulence-associated genes in clinical strains of Staphylococcus aureus.; PloS one; Vol 64. 2011.
• 1. Christie GE
  2. Matthews AM
  3. King DG
  4. Lane KD
  5. Olivarez NP
  6. Tallent SM
  7. Gill SR
  8. Novick RP
  The complete genomes of Staphylococcus aureus bacteriophages 80 and 80α--implications for the specificity of SaPI mobilization.; Virology; Vol 4072. 2010 Nov 25.
• 1. Gerrish RS
  2. Gill SR
  Tailed pooled suppression subtractive hybridization (PSSH) adaptors do not alter efficiency.; Antonie van Leeuwenhoek; Vol 984. 2010 Nov.
• 1. Bik EM
  2. Long CD
  3. Armitage GC
  4. Loomer P
  5. Emerson J
  6. Mongodin EF
  7. Nelson KE
  8. Gill SR
  9. Fraser-Liggett CM
  10. Relman DA
  Bacterial diversity in the oral cavity of 10 healthy individuals.; The ISME journal; Vol 48. 2010 Aug.
• 1. Gerrish RS
  2. Gill AL
  3. Fowler VG
  4. Gill SR
  Development of pooled suppression subtractive hybridization to analyze the pangenome of Staphylococcus aureus.; Journal of microbiological methods; Vol 811. 2010 Apr.
• 1. Qu J
  2. Lesse AJ
  3. Brauer AL
  4. Cao J
  5. Gill SR
  6. Murphy TF
  Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses.; BMC microbiology; Vol 10. 2010.
• 1. Jayaprakash V
  2. Sullivan M
  3. Merzianu M
  4. Rigual NR
  5. Loree TR
  6. Popat SR
  7. Moysich KB
  8. Ramananda S
  9. Johnson T
  10. Marshall JR
  11. Hutson AD
  12. Mang TS
  13. Wilson BC
  14. Gill SR
  15. Frustino J
  16. Bogaards A
  17. Reid ME
  Autofluorescence-guided surveillance for oral cancer.; Cancer prevention research (Philadelphia, Pa.); Vol 211. 2009 Nov.
• 1. Lin EA
  2. Zhang XS
  3. Levine SM
  4. Gill SR
  5. Falush D
  6. Blaser MJ
  Natural transformation of helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size.; PLoS pathogens; Vol 53. 2009 Mar.
• 1. Heo SM
  2. Haase EM
  3. Lesse AJ
  4. Gill SR
  5. Scannapieco FA
  Genetic relationships between respiratory pathogens isolated from dental plaque and bronchoalveolar lavage fluid from patients in the intensive care unit undergoing mechanical ventilation.; Clinical infectious diseases : an official publication of the Infectious Diseases Society of America; Vol 4712. 2008 Dec 15.
• 1. Jakubovics NS
  2. Gill SR
  3. Vickerman MM
  4. Kolenbrander PE
  Role of hydrogen peroxide in competition and cooperation between Streptococcus gordonii and Actinomyces naeslundii.; FEMS microbiology ecology; Vol 663. 2008 Dec.
• 1. Adams MD
  2. Goglin K
  3. Molyneaux N
  4. Hujer KM
  5. Lavender H
  6. Jamison JJ
  7. MacDonald IJ
  8. Martin KM
  9. Russo T
  10. Campagnari AA
  11. Hujer AM
  12. Bonomo RA
  13. Gill SR
  Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii.; Journal of bacteriology; Vol 19024. 2008 Dec.
• 1. Russo TA
  2. Beanan JM
  3. Olson R
  4. MacDonald U
  5. Luke NR
  6. Gill SR
  7. Campagnari AA
  Rat pneumonia and soft-tissue infection models for the study of Acinetobacter baumannii biology.; Infection and immunity; Vol 768. 2008 Aug.
• 1. Jakubovics NS
  2. Gill SR
  3. Iobst SE
  4. Vickerman MM
  5. Kolenbrander PE
  Regulation of gene expression in a mixed-genus community: stabilized arginine biosynthesis in Streptococcus gordonii by coaggregation with Actinomyces naeslundii.; Journal of bacteriology; Vol 19010. 2008 May.
• 1. Vickerman MM
  2. Iobst S
  3. Jesionowski AM
  4. Gill SR
  Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide.; Journal of bacteriology; Vol 18921. 2007 Nov.
• 1. Fowler VG
  2. Nelson CL
  3. McIntyre LM
  4. Kreiswirth BN
  5. Monk A
  6. Archer GL
  7. Federspiel J
  8. Naidich S
  9. Remortel B
  10. Rude T
  11. Brown P
  12. Reller LB
  13. Corey GR
  14. Gill SR
  Potential associations between hematogenous complications and bacterial genotype in Staphylococcus aureus infection.; The Journal of infectious diseases; Vol 1965. 2007 Sep 1.
• 1. Rasko DA
  2. Rosovitz MJ
  3. Økstad OA
  4. Fouts DE
  5. Jiang L
  6. Cer RZ
  7. Kolstø AB
  8. Gill SR
  9. Ravel J
  Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1.; Journal of bacteriology; Vol 1891. 2007 Jan.
• 1. Vickerman MM
  2. Brossard KA
  3. Funk DB
  4. Jesionowski AM
  5. Gill SR
  Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections.; Journal of medical microbiology; Vol 56Pt 1. 2007 Jan.
• 1. Gardete S
  2. Wu SW
  3. Gill S
  4. Tomasz A
  Role of VraSR in antibiotic resistance and antibiotic-induced stress response in Staphylococcus aureus.; Antimicrobial agents and chemotherapy; Vol 5010. 2006 Oct.
• 1. Pieper R
  2. Gatlin-Bunai CL
  3. Mongodin EF
  4. Parmar PP
  5. Huang ST
  6. Clark DJ
  7. Fleischmann RD
  8. Gill SR
  9. Peterson SN
  Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall-targeting antibiotic vancomycin.; Proteomics; Vol 615. 2006 Aug.
• 1. Gill SR
  2. Pop M
  3. Deboy RT
  4. Eckburg PB
  5. Turnbaugh PJ
  6. Samuel BS
  7. Gordon JI
  8. Relman DA
  9. Fraser-Liggett CM
  10. Nelson KE
  Metagenomic analysis of the human distal gut microbiome.; Science (New York, N.Y.); Vol 3125778. 2006 Jun 2.
• 1. Fouts DE
  2. Rasko DA
  3. Cer RZ
  4. Jiang L
  5. Fedorova NB
  6. Shvartsbeyn A
  7. Vamathevan JJ
  8. Tallon L
  9. Althoff R
  10. Arbogast TS
  11. Fadrosh DW
  12. Read TD
  13. Gill SR
  Sequencing Bacillus anthracis typing phages gamma and cherry reveals a common ancestry.; Journal of bacteriology; Vol 1889. 2006 May.
• 1. Diep BA
  2. Gill SR
  3. Chang RF
  4. Phan TH
  5. Chen JH
  6. Davidson MG
  7. Lin F
  8. Lin J
  9. Carleton HA
  10. Mongodin EF
  11. Sensabaugh GF
  12. Perdreau-Remington F
  Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus.; Lancet (London, England); Vol 3679512. 2006 Mar 4.