Publications

• 1. Quivey RG
  2. O'Connor TG
  3. Gill SR
  4. Kopycka-Kedzierawski DT
  Prediction of early childhood caries onset and oral microbiota.; Molecular oral microbiology. 2021 Jul 27.
• 1. Lambert PA
  2. Gill AL
  3. Gill SR
  4. Allen PD
  5. Man LX
  Microbiomics of irrigation with xylitol or Lactococcus lactis in chronic rhinosinusitis.; Laryngoscope investigative otolaryngology; Vol 6(1). 2021 Feb.
• 1. Snell SB
  2. Gill AL
  3. Haidaris CG
  4. Foster TH
  5. Baran TM
  6. Gill SR
  Staphylococcus aureus Tolerance and Genomic Response to Photodynamic Inactivation.; mSphere; Vol 6(1). 2021 Jan 06.
• 1. Masters EA
  2. Muthukrishnan G
  3. Ho L
  4. Gill AL
  5. de Mesy Bentley KL
  6. Galloway CA
  7. McGrath JL
  8. Awad HA
  9. Gill SR
  10. Schwarz EM
  Staphylococcus aureus Cell Wall Biosynthesis Modulates Bone Invasion and Osteomyelitis Pathogenesis.; Frontiers in microbiology; Vol 12. 2021.
• 1. Wu TT
  2. Xiao J
  3. Sohn MB
  4. Fiscella KA
  5. Gilbert C
  6. Grier A
  7. Gill AL
  8. Gill SR
  Machine Learning Approach Identified Multi-Platform Factors for Caries Prediction in Child-Mother Dyads.; Frontiers in cellular and infection microbiology; Vol 11. 2021.
• 1. Grier A
  2. Myers JA
  3. O'Connor TG
  4. Quivey RG
  5. Gill SR
  6. Kopycka-Kedzierawski DT
  Oral Microbiota Composition Predicts Early Childhood Caries Onset.; Journal of dental research. 2020 Dec 24.
• 1. Masters EA
  2. de Mesy Bentley KL
  3. Gill AL
  4. Hao SP
  5. Galloway CA
  6. Salminen AT
  7. Guy DR
  8. McGrath JL
  9. Awad HA
  10. Gill SR
  11. Schwarz EM
  Identification of Penicillin Binding Protein 4 (PBP4) as a critical factor for Staphylococcus aureus bone invasion during osteomyelitis in mice.; PLoS pathogens; Vol 16(10). 2020 Oct 22.
• 1. Grier A
  2. Gill AL
  3. Kessler HA
  4. Corbett A
  5. Bandyopadhyay S
  6. Java J
  7. Holden-Wiltse J
  8. Falsey AR
  9. Topham DJ
  10. Mariani TJ
  11. Caserta MT
  12. Walsh EE
  13. Gill SR
  Temporal Dysbiosis of Infant Nasal Microbiota Relative to Respiratory Syncytial Virus Infection.; The Journal of infectious diseases. 2020 Sep 14.
• 1. Chu CY
  2. Qiu X
  3. McCall MN
  4. Wang L
  5. Corbett A
  6. Holden-Wiltse J
  7. Slaunwhite C
  8. Grier A
  9. Gill SR
  10. Pryhuber GS
  11. Falsey AR
  12. Topham DJ
  13. Caserta MT
  14. Walsh EE
  15. Mariani TJ
  Airway gene expression correlates of RSV disease severity and microbiome composition in infants.; The Journal of infectious diseases. 2020 Sep 14.
• 1. Dunning Hotopp JC
  2. Baltrus DA
  3. Bruno VM
  4. Dennehy JJ
  5. Gill SR
  6. Maresca JA
  7. Matthijnssens J
  8. Newton ILG
  9. Putonti C
  10. Rasko DA
  11. Rokas A
  12. Roux S
  13. Stajich JE
  14. Stedman KM
  15. Stewart FJ
  16. Thrash JC
  Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements.; Microbiology resource announcements; Vol 9(36). 2020 Sep 03.
• 1. McDavid A
  2. Corbett AM
  3. Dutra JL
  4. Straw AG
  5. Topham DJ
  6. Pryhuber GS
  7. Caserta MT
  8. Gill SR
  9. Scheible KM
  10. Holden-Wiltse J
  Eight practices for data management to enable team data science.; Journal of clinical and translational science; Vol 5(1). 2020 Jun 23.
• 1. Xiao J
  2. Fiscella KA
  3. Gill SR
  Oral microbiome: possible harbinger for children's health.; International journal of oral science; Vol 12(1). 2020 Apr 30.
• 1. Quinones Tavarez Z
  2. Li D
  3. Croft DP
  4. Gill SR
  5. Ossip DJ
  6. Rahman I
  The Interplay Between Respiratory Microbiota and Innate Immunity in Flavor E-Cigarette Vaping Induced Lung Dysfunction.; Frontiers in microbiology; Vol 11. 2020.
• 1. Favazzo LJ
  2. Hendesi H
  3. Villani DA
  4. Soniwala S
  5. Dar QA
  6. Schott EM
  7. Gill SR
  8. Zuscik MJ
  The gut microbiome-joint connection: implications in osteoarthritis.; Current opinion in rheumatology. 2019 Nov 12.
• 1. Sonawane AR
  2. Tian L
  3. Chu CY
  4. Qiu X
  5. Wang L
  6. Holden-Wiltse J
  7. Grier A
  8. Gill SR
  9. Caserta MT
  10. Falsey AR
  11. Topham DJ
  12. Walsh EE
  13. Mariani TJ
  14. Weiss ST
  15. Silverman EK
  16. Glass K
  17. Liu YY
  Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection.; Scientific reports; Vol 9(1). 2019 Sep 25.
• 1. Caserta MT
  2. Yang H
  3. Bandyopadhyay S
  4. Qiu X
  5. Gill SR
  6. Java J
  7. McDavid A
  8. Falsey AR
  9. Topham DJ
  10. Holden-Wiltse J
  11. Scheible K
  12. Pryhuber G
  Measuring the Severity of Respiratory Illness in the First 2 Years of Life in Preterm and Term Infants.; The Journal of pediatrics. 2019 Jul 31.
• 1. Masters EA
  2. Salminen AT
  3. Begolo S
  4. Luke EN
  5. Barrett S
  6. Overby CT
  7. Gill AL
  8. de Mesy Bentley KL
  9. Awad HA
  10. Gill SR
  11. Schwarz EM
  12. McGrath JL
  An in vitro platform for elucidating the molecular genetics of S. aureus invasion of the osteocyte lacuno-canalicular network during chronic osteomyelitis.; Nanomedicine : nanotechnology, biology, and medicine. 2019 Jun 24.
• 1. Walsh EE
  2. Mariani TJ
  3. Chu C
  4. Grier A
  5. Gill SR
  6. Qiu X
  7. Wang L
  8. Holden-Wiltse J
  9. Corbett A
  10. Thakar J
  11. Benoodt L
  12. McCall MN
  13. Topham DJ
  14. Falsey AR
  15. Caserta MT
  Aims, Study Design, and Enrollment Results From the Assessing Predictors of Infant Respiratory Syncytial Virus Effects and Severity Study.; JMIR research protocols; Vol 8(6). 2019 Jun 06.
• 1. Favazzo LJ
  2. Gill AL
  3. Farnsworth CW
  4. Mooney RA
  5. Gill SR
  Response of nor and nos contributes to Staphylococcus aureus virulence and metabolism.; Journal of bacteriology. 2019 Feb 19.
• 1. Masters EA
  2. Trombetta RP
  3. de Mesy Bentley KL
  4. Boyce BF
  5. Gill AL
  6. Gill SR
  7. Nishitani K
  8. Ishikawa M
  9. Morita Y
  10. Ito H
  11. Bello-Irizarry SN
  12. Ninomiya M
  13. Brodell JD
  14. Lee CC
  15. Hao SP
  16. Oh I
  17. Xie C
  18. Awad HA
  19. Daiss JL
  20. Owen JR
  21. Kates SL
  22. Schwarz EM
  23. Muthukrishnan G
  Evolving concepts in bone infection: redefining "biofilm", "acute vs. chronic osteomyelitis", "the immune proteome" and "local antibiotic therapy".; Bone research; Vol 7. 2019.
• 1. Grier A
  2. McDavid A
  3. Wang B
  4. Qiu X
  5. Java J
  6. Bandyopadhyay S
  7. Yang H
  8. Holden-Wiltse J
  9. Kessler HA
  10. Gill AL
  11. Huyck H
  12. Falsey AR
  13. Topham DJ
  14. Scheible KM
  15. Caserta MT
  16. Pryhuber GS
  17. Gill SR
  Neonatal gut and respiratory microbiota: coordinated development through time and space.; Microbiome; Vol 6(1). 2018 Oct 26.
• 1. Oh I
  2. Muthukrishnan G
  3. Ninomiya MJ
  4. Brodell JD
  5. Smith BL
  6. Lee CC
  7. Gill SR
  8. Beck CA
  9. Schwarz EM
  10. Daiss JL
  Tracking Anti-Staphylococcus aureus Antibodies Produced In Vivo and Ex Vivo during Foot Salvage Therapy for Diabetic Foot Infections Reveals Prognostic Insights and Evidence of Diversified Humoral Immunity.; Infection and immunity. 2018 Oct 01.
• 1. Xiao J
  2. Grier A
  3. Faustoferri RC
  4. Alzoubi S
  5. Gill AL
  6. Feng C
  7. Liu Y
  8. Quivey RG
  9. Kopycka-Kedzierawski DT
  10. Koo H
  11. Gill SR
  Association between Oral Candida and Bacteriome in Children with Severe ECC.; Journal of dental research. 2018 Jul 26.
• 1. Farnsworth CW
  2. Schott EM
  3. Benvie A
  4. Kates SL
  5. Schwarz EM
  6. Gill SR
  7. Zuscik MJ
  8. Mooney RA
  Exacerbated Staphylococcus aureus Foot Infections in Obese/Diabetic Mice Are Associated with Impaired Germinal Center Reactions, Ig Class Switching, and Humoral Immunity.; Journal of immunology (Baltimore, Md. : 1950). 2018 Jun 01.
• 1. Schott EM
  2. Farnsworth CW
  3. Grier A
  4. Lillis JA
  5. Soniwala S
  6. Dadourian GH
  7. Bell RD
  8. Doolittle ML
  9. Villani DA
  10. Awad H
  11. Ketz JP
  12. Kamal F
  13. Ackert-Bicknell C
  14. Ashton JM
  15. Gill SR
  16. Mooney RA
  17. Zuscik MJ
  Targeting the gut microbiome to treat the osteoarthritis of obesity.; JCI insight; Vol 3(8). 2018 Apr 19.
• 1. Rieth KKS
  2. Gill SR
  3. Lott-Limbach AA
  4. Merkley MA
  5. Botero N
  6. Allen PD
  7. Miller MC
  Prevalence of High-Risk Human Papillomavirus in Tonsil Tissue in Healthy Adults and Colocalization in Biofilm of Tonsillar Crypts.; JAMA otolaryngology-- head & neck surgery. 2018 Jan 25.
• 1. Farnsworth CW
  2. Schott EM
  3. Benvie AM
  4. Zukoski J
  5. Kates SL
  6. Schwarz EM
  7. Gill SR
  8. Zuscik MJ
  9. Mooney RA
  Obesity/type 2 diabetes increases inflammation, periosteal reactive bone formation and osteolysis during Staphylococcus aureus implant-associated bone infection.; Journal of orthopaedic research : official publication of the Orthopaedic Research Society. 2017 Dec 11.
• 1. Grier A
  2. Qiu X
  3. Bandyopadhyay S
  4. Holden-Wiltse J
  5. Kessler HA
  6. Gill AL
  7. Hamilton B
  8. Huyck H
  9. Misra S
  10. Mariani TJ
  11. Ryan RM
  12. Scholer L
  13. Scheible KM
  14. Lee YH
  15. Caserta MT
  16. Pryhuber GS
  17. Gill SR
  Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth.; Microbiome; Vol 5(1). 2017 Dec 11.
• 1. Caito SW
  2. Jackson BP
  3. Punshon T
  4. Scrimale T
  5. Grier A
  6. Gill SR
  7. Love TM
  8. Watson GE
  9. van Wijngaarden E
  10. Rand MD
  Variation in Methylmercury Metabolism and Elimination Status (MerMES) in Humans Following Fish Consumption.; Toxicological sciences : an official journal of the Society of Toxicology. 2017 Nov 14.
• 1. Bhattacharya S
  2. Rosenberg AF
  3. Peterson DR
  4. Grzesik K
  5. Baran AM
  6. Ashton JM
  7. Gill SR
  8. Corbett AM
  9. Holden-Wiltse J
  10. Topham DJ
  11. Walsh EE
  12. Mariani TJ
  13. Falsey AR
  Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness.; Scientific reports; Vol 7(1). 2017 Jul 26.
• 1. Farnsworth CW
  2. Schott EM
  3. Jensen SE
  4. Zukoski J
  5. Benvie AM
  6. Refaai MA
  7. Kates SL
  8. Schwarz EM
  9. Zuscik MJ
  10. Gill SR
  11. Mooney RA
  Adaptive upregulation of Clumping Factor A (ClfA) by S. aureus in the obese, type 2 diabetic host mediates increased virulence.; Infection and immunity. 2017 Mar 20.
• 1. Caserta MT
  2. Yang H
  3. Gill SR
  4. Holden-Wiltse J
  5. Pryhuber G
  Viral Respiratory Infections in Preterm Infants during and after Hospitalization.; The Journal of pediatrics; Vol 182. 2017 Mar.
• 1. Nakatsuji T
  2. Chen TH
  3. Narala S
  4. Chun KA
  5. Two AM
  6. Yun T
  7. Shafiq F
  8. Kotol PF
  9. Bouslimani A
  10. Melnik AV
  11. Latif H
  12. Kim JN
  13. Lockhart A
  14. Artis K
  15. David G
  16. Taylor P
  17. Streib J
  18. Dorrestein PC
  19. Grier A
  20. Gill SR
  21. Zengler K
  22. Hata TR
  23. Leung DY
  24. Gallo RL
  Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis.; Science translational medicine; Vol 9(378). 2017 Feb 22.
• 1. Chu CY
  2. Qiu X
  3. Wang L
  4. Bhattacharya S
  5. Lofthus G
  6. Corbett A
  7. Holden-Wiltse J
  8. Grier A
  9. Tesini B
  10. Gill SR
  11. Falsey AR
  12. Caserta MT
  13. Walsh EE
  14. Mariani TJ
  The Healthy Infant Nasal Transcriptome: A Benchmark Study.; Scientific reports; Vol 6. 2016.
• 1. Xiao J
  2. Moon Y
  3. Li L
  4. Rustchenko E
  5. Wakabayashi H
  6. Zhao X
  7. Feng C
  8. Gill SR
  9. McLaren S
  10. Malmstrom H
  11. Ren Y
  12. Quivey R
  13. Koo H
  14. Kopycka-Kedzierawski DT
  Candida albicans Carriage in Children with Severe Early Childhood Caries (S-ECC) and Maternal Relatedness.; PloS one; Vol 11(10). 2016.
• 1. Strange C
  2. Senior RM
  3. Sciurba F
  4. O'Neal S
  5. Morris A
  6. Wisniewski SR
  7. Bowler R
  8. Hochheiser HS
  9. Becich MJ
  10. Zhang Y
  11. Leader JK
  12. Methé BA
  13. Kaminski N
  14. Sandhaus RA
  Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis Study. Alpha-1 Protocol.; Annals of the American Thoracic Society; Vol 12(10). 2015 Oct.
• 1. Moller DR
  2. Koth LL
  3. Maier LA
  4. Morris A
  5. Drake W
  6. Rossman M
  7. Leader JK
  8. Collman RG
  9. Hamzeh N
  10. Sweiss NJ
  11. Zhang Y
  12. O'Neal S
  13. Senior RM
  14. Becich M
  15. Hochheiser HS
  16. Kaminski N
  17. Wisniewski SR
  18. Gibson KF
  Rationale and Design of the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) Study. Sarcoidosis Protocol.; Annals of the American Thoracic Society; Vol 12(10). 2015 Oct.
• 1. Merkley MA
  2. Bice TC
  3. Grier A
  4. Strohl AM
  5. Man LX
  6. Gill SR
  The effect of antibiotics on the microbiome in acute exacerbations of chronic rhinosinusitis.; International forum of allergy & rhinology; Vol 5(10). 2015 Oct.
• 1. Sharma-Kuinkel BK
  2. Mongodin EF
  3. Myers JR
  4. Vore KL
  5. Canfield GS
  6. Fraser CM
  7. Rude TH
  8. Fowler VG
  9. Gill SR
  Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections.; Open forum infectious diseases; Vol 2(3). 2015 Sep.
• 1. Lenhard JR
  2. Brown T
  3. Rybak MJ
  4. Meaney CJ
  5. Norgard NB
  6. Bulman ZP
  7. Brazeau DA
  8. Gill SR
  9. Tsuji BT
  Sequential Evolution of Vancomycin-Intermediate Resistance Alters Virulence in Staphylococcus aureus: Pharmacokinetic/Pharmacodynamic Targets for Vancomycin Exposure.; Antimicrobial agents and chemotherapy; Vol 60(3). 2015.
• 1. Dardas M
  2. Gill SR
  3. Grier A
  4. Pryhuber GS
  5. Gill AL
  6. Lee YH
  7. Guillet R
  The impact of postnatal antibiotics on the preterm intestinal microbiome.; Pediatric research; Vol 76(2). 2014 Aug.
• 1. Edholm ES
  2. Albertorio Saez LM
  3. Gill AL
  4. Gill SR
  5. Grayfer L
  6. Haynes N
  7. Myers JR
  8. Robert J
  Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians.; Proceedings of the National Academy of Sciences of the United States of America; Vol 110(35). 2013 Aug 27.
• 1. Russo TA
  2. Gill SR
  Draft Genome Sequence of the Hypervirulent Klebsiella pneumoniae Strain hvKP1, Isolated in Buffalo, New York.; Genome announcements; Vol 1(2). 2013 Mar.
• 1. Zhu L
  2. Baker SS
  3. Gill C
  4. Liu W
  5. Alkhouri R
  6. Baker RD
  7. Gill SR
  Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH.; Hepatology (Baltimore, Md.); Vol 57(2). 2013 Feb.
• 1. Canfield GS
  2. Schwingel JM
  3. Foley MH
  4. Vore KL
  5. Boonanantanasarn K
  6. Gill AL
  7. Sutton MD
  8. Gill SR
  Evolution in fast forward: a potential role for mutators in accelerating Staphylococcus aureus pathoadaptation.; Journal of bacteriology; Vol 195(3). 2013 Feb.
• 1. Boonanantanasarn K
  2. Gill AL
  3. Yap Y
  4. Jayaprakash V
  5. Sullivan MA
  6. Gill SR
  Enterococcus faecalis enhances cell proliferation through hydrogen peroxide-mediated epidermal growth factor receptor activation.; Infection and immunity; Vol 80(10). 2012 Oct.
• 1. Nikitkova AE
  2. Haase EM
  3. Vickerman MM
  4. Gill SR
  5. Scannapieco FA
  Response of fatty acid synthesis genes to the binding of human salivary amylase by Streptococcus gordonii.; Applied and environmental microbiology; Vol 78(6). 2012 Mar.
• 1. Kos VN
  2. Desjardins CA
  3. Griggs A
  4. Cerqueira G
  5. Van Tonder A
  6. Holden MT
  7. Godfrey P
  8. Palmer KL
  9. Bodi K
  10. Mongodin EF
  11. Wortman J
  12. Feldgarden M
  13. Lawley T
  14. Gill SR
  15. Haas BJ
  16. Birren B
  17. Gilmore MS
  Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.; mBio; Vol 3(3). 2012.
• 1. Jayaprakash V
  2. Reid M
  3. Hatton E
  4. Merzianu M
  5. Rigual N
  6. Marshall J
  7. Gill S
  8. Frustino J
  9. Wilding G
  10. Loree T
  11. Popat S
  12. Sullivan M
  Human papillomavirus types 16 and 18 in epithelial dysplasia of oral cavity and oropharynx: a meta-analysis, 1985-2010.; Oral oncology; Vol 47(11). 2011 Nov.
• 1. Faden H
  2. Gill S
  3. Lesse A
  Impact of management and bacterial genomics on outcomes of Staphylococcus aureus bacteremia in children.; Clinical pediatrics; Vol 50(10). 2011 Oct.