Publications

• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Schifitto G
  5. Wismüller A
  Mutual connectivity analysis of resting-state functional MRI data with local models.; NeuroImage. 2018 May 16.
• 1. Abidin AZ
  2. Deng B
  3. DSouza AM
  4. Nagarajan MB
  5. Coan P
  6. Wismüller A
  Deep transfer learning for characterizing chondrocyte patterns in phase contrast X-Ray computed tomography images of the human patellar cartilage.; Computers in biology and medicine; Vol 95. 2018 Apr 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Wismüller A
  Regional autonomy changes in resting-state functional MRI in patients with HIV associated neurocognitive disorder; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Chockanathan U
  4. Schifitto G
  5. Wismüller A
  Investigating directed functional connectivity between the resting state networks of the human brain using mutual connectivity analysis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
• 1. Chockanathan U
  2. Abidin AZ
  3. DSouza AM
  4. Schifitto G
  5. Wismüller A
  Resilient modular small-world directed brain networks in healthy subjects with large-scale Granger causality analysis of resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
• 1. Chockanathan U
  2. DSouza AM
  3. Abidin AZ
  4. Schifitto G
  5. Wismüller A
  Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10575. 2018 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Leistritz L
  5. Wismüller A
  Investigating large-scale Granger causality analysis in presence of noise and varying sampling rate; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
• 1. Chen L
  2. Wu Y
  3. DSouza AM
  4. Abidin AZ
  5. Wismüller A
  6. Xu C
  MRI tumor segmentation with densely connected 3D CNN; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Nagarajan MB
  4. Wang L
  5. Qiu X
  6. Schifitto G
  7. Wismüller A
  Alteration of brain network topology in HIV-associated neurocognitive disorder: A novel functional connectivity perspective; NeuroImage. Clinical; Vol 17, pp. 768-777. 2018 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Leistritz L
  4. Wismüller A
  Exploring Connectivity with Large-Scale Granger Causality on Resting-State Functional MRI.; Journal of neuroscience methods. 2017 Jun 16.
• 1. Deng B
  2. Abidin AZ
  3. DSouza AM
  4. Nagarajan MB
  5. Chockanathan U
  6. Coan P
  7. Wismüller A
  Characterizing cartilage microarchitecture on phase-contrast x-ray computed tomography using deep learning with convolutional neural networks; Proc. of SPIE - the International Society for Optical Engineering; Vol 1013412. 2017 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Chockanathan U
  4. Inglese M
  5. Wismüller A
  Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Leistritz L
  5. Wismüller A
  Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10133. 2017 Jan 01.
• 1. Abidin AZ
  2. Chockanathan U
  3. Jameson J
  4. Molthen R
  5. Wismüller A
  Classification of micro-CT images using 3D characterization of bone canal patterns in human osteogenesis imperfecta; Proc. of SPIE - the International Society for Optical Engineering; Vol 10134. 2017 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Nagarajan MB
  5. Wismüller A
  Investigating changes in resting-state connectivity from functional MRI data in patients with HIV associated neurocognitive disorder using MCA and machine learning; Proc. of SPIE- the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
• 1. Schmidt C
  2. Pester B
  3. Schmid-Hertel N
  4. Witte H
  5. Wismüller A
  6. Leistritz L
  A Multivariate Granger Causality Concept towards Full Brain Functional Connectivity.; PloS one; Vol 114. 2016.
• 1. D'Souza AM
  2. Abidin AZ
  3. Nagarajan MB
  4. Wismüller A
  Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. D'Souza AM
  2. Abidin AZ
  3. Leistritz L
  4. Wismüller A
  Large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Nagarajan MB
  4. Wismüller A
  Detecting altered connectivity patterns in HIV associated neurocognitive impairment using mutual connectivity analysis; Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Nagarajan MB
  4. Wismüller A
  Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA); Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. Checefsky WA
  2. Abidin AZ
  3. Nagarajan MB
  4. Bauer JS
  5. Baum T
  6. Wismüller A
  Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure; Proc. of SPIE; Vol 9785. 2016 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography.; Medical & biological engineering & computing; Vol 5311. 2015 Nov.
• 1. Wismüller A
  2. Wang X
  3. DSouza AM
  4. Hobbs SK
  5. Leistritz L
  6. Nagarajan MB
  Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering; Proc. of SPIE; Vol 9417doi:10.1117/12.2082124. 2015 Jan 01.
• 1. Wismüller A
  2. DSouza AM
  3. Abidin AZ
  4. Wang X
  5. Hobbs SK
  6. Nagarajan MB
  Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery; Proc. of SPIE; Vol 9417doi:10.1117/12.2082106. 2015 Jan 01.
• 1. Wang X
  2. Nagarajan MB
  3. Abidin AZ
  4. D'Souza A
  5. Hobbs SK
  6. Wismüller A
  Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI; Proc. of SPIE; Vol 9417doi:10.1117/12.2082565. 2015 Jan 01.
• 1. Nagarajan MB
  2. Checefsky WA
  3. Abidin AZ
  4. Tsai H
  5. Wang X
  6. Hobbs SK
  7. Bauer JS
  8. Baum T
  9. Wismüller A
  Characterizing trabecular bone structure for assessing vertebral fracture risk on volumetric quantitative computed tomography; Proc. of SPIE; Vol 9417doi:10.1117/12.2082059. 2015 Jan 01.
• 1. Abidin AZ
  2. Nagarajan MB
  3. Checefsky WA
  4. Coan P
  5. Diemoz PC
  6. Hobbs SK
  7. Huber MB
  8. Wismüller A
  Volumetric characterization of human patellar cartilage matrix on phase contrast x-ray computed tomography; Proc. of SPIE; Vol 9417doi:10.1117/12.2082084. 2015 Jan 01.
• 1. Abidin AZ
  2. Nagarajan MB
  3. Checefsky WA
  4. Coan P
  5. Diemoz PC
  6. Hobbs SK
  7. Huber MB
  8. Wismüller A
  Volumetric Characterization of Human Patellar Cartilage Matrix on Phase Contrast X-Ray Computed Tomography.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015 Feb.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography.; PloS one; Vol 102. 2015.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography; PLOS One; Vol D-14-25225R1. 2015 Jan 01.
• 1. Yang CC
  2. Nagarajan MB
  3. Huber MB
  4. Carballido-Gamio J
  5. Bauer JS
  6. Baum T
  7. Eckstein F
  8. Lochmüller E
  9. Majumdar S
  10. Link TM
  11. Wismüller A
  Improving bone strength prediction in human proximal femur specimens through geometrical characterization of trabecular bone microarchitecture and support vector regression.; Journal of electronic imaging; Vol 231. 2014 Feb 4.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Glaser C
  6. Wismüller A
  Computer-aided diagnosis for phase-contrast X-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features.; Journal of digital imaging; Vol 271. 2014 Feb.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Phase contrast imaging X-ray computed tomography: Quantitative characterization of human patellar cartilage matrix with topological and geometrical features.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9038. 2014 Feb.
• 1. Nagarajan MB
  2. Huber MB
  3. Schlossbauer T
  4. Leinsinger G
  5. Krol A
  6. Wismüller A
  Classification of small lesions on dynamic breast MRI: Integrating dimension reduction and out-of-sample extension into CADx methodology.; Artificial intelligence in medicine; Vol 601. 2014 Jan.
• 1. Yang C
  2. Nagarajan MB
  3. Huber MB
  4. Carballido-Gamio J
  5. Bauer JS
  6. Baum T
  7. Eckstein F
  8. Lochmüller E
  9. Majumdar S
  10. Link TM
  11. Wismüller A
  Improving bone strength prediction in human proximal femur specimens through geometrical characterization of trabecular bone micro-architecture and support vector regression; Journal of Electronic Imaging; Vol 231. 2014 Jan 01.
• 1. Nagarajan MB
  2. Huber MB
  3. Schlossbauer T
  4. Leinsinger G
  5. Krol A
  6. Wismüller A
  Classification of small lesions on dynamic breast MRI: Integrating dimension reduction and out-of-sample extension into CADx methodology; Artificial Intelligence in Medicine; Vol 601, pp. 65-77. 2014 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Glaser C
  6. Wismuller A
  Computer-aided diagnosis in phase contrast imaging X-ray computed tomography for quantitative characterization of ex vivo human patellar cartilage.; IEEE transactions on bio-medical engineering; Vol 6010. 2013 Oct.
• 1. Nagarajan MB
  2. Huber MB
  3. Schlossbauer T
  4. Leinsinger G
  5. Krol A
  6. Wismüller A
  Classification of small lesions in dynamic breast MRI: Eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement over time.; Machine vision and applications; Vol 247. 2013 Oct 1.
• 1. Nagarajan MB
  2. Huber MB
  3. Schlossbauer T
  4. Leinsinger G
  5. Krol A
  6. Wismüller A
  Classification of Small Lesions in Breast MRI: Evaluating The Role of Dynamically Extracted Texture Features Through Feature Selection.; Journal of medical and biological engineering; Vol 331. 2013 Jan 1.
• 1. Nagarajan MB
  2. Huber MB
  3. Schlossbauer T
  4. Leinsinger G
  5. Krol A
  6. Wismüller A
  Classification of small lesions in dynamic breast MRI: eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement; Machine Vision and Applications; Vol 247, pp. 1371-1381. 2013 Jan 01.
• 1. Nagarajan MB
  2. Huber MB
  3. Schlossbauer T
  4. Leinsinger G
  5. Krol A
  6. Wismüller A
  Classification of small lesions on breast MRI: evaluating the role of dynamically extracted texture features through feature selection; Journal of Medical and Biological Engineering; Vol 331, pp. 59-68. 2013 Jan 01.
• 1. Bhole C
  2. Pal C
  3. Rim D
  4. Wismüller A
  3D segmentation of abdominal CT imagery with graphical models, conditional random fields and learning; Machine Vision and Applications. 2013 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Glaser C
  6. Wismüller A
  Computer-aided diagnosis for phase-contrast x-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features; Journal of Digital Imaging. 2013 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Glaser C
  6. Wismüller A
  Computer-aided diagnosis in phase contrast imaging x-ray computed tomography for quantitative characterization of ex vivo human patellar cartilage; IEEE Transactions on Biomedical Engineering; Vol 6010, pp. 2896-2903. 2013 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast x-ray computed tomography; Computerized Medical Imaging and Graphics. 2013 Jan 01.
• 1. Nagarajan MB
  2. De T
  3. Lochmüller EM
  4. Eckstein F
  5. Wismüller A
  Using anisotropic 3D Minkowski functionals for trabecular bone characterization and biomechanical strength prediction in proximal femur specimens; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
• 1. Wang X
  2. Nagarajan MB
  3. Conover D
  4. Ning R
  5. O'Connell A
  6. Wismüller A
  Investigating the use of texture features for analysis of breast lesions on contrast-enhanced cone beam CT; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
• 1. Yang C
  2. Nagarajan MB
  3. Huber MB
  4. Carballido-Gamio J
  5. Bauer JS
  6. Baum T
  7. Eckstein F
  8. Lochmüller EM
  9. Link TM
  10. Wismüller A
  Predicting the biomechanical strength of proximal femur specimens with Minkowski functionals and support vector regression; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Phase contrast imaging X-ray computed tomography: Quantitative characterization of human patellar cartilage matrix with topological and geometrical features; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Glaser C
  6. Wismüller A
  Characterizing healthy and osteoarthritic knee cartilage on phase contrast CT with geometric texture features; Proceedings of SPIE; Vol 8672. 2013 Jan 01.