URMC / Labs / Wismüller Lab / Publications Publications Wismüller AStockmaster L Investigating Covid-19 Pandemic-Induced Effects on Detection of Emergent Clinical Imaging Findings by Large-Scale Tracking of Utilization and Reading Results for AI-Based Image Analysis Services; Proc. of SPIE. Accepted for publication.. 2021 Jan 01. Wismüller AVosoughi MA Large-scale Augmented Granger Causality (lsAGC) for Connectivity Analysis in Complex Systems: From Computer Simulations to Functional MRI (fMRI); Proc. of SPIE. Accepted for publication.. 2021 Jan 01. Wismüller ADSouza AMVosoughi MAAbidin AZ Network Connectivity Analysis in Complex Systems Using Large-Scale Non-Linear Granger Causality (lsNGC); Proc. of SPIE. Accepted for publication.. 2021 Jan 01. Vosoughi MAWismüller A Large-Scale Extended Granger Causality for Classification of Marijuana Users From Functional MRI; Proc. of SPIE. Accepted for publication.. 2021 Jan 01. Abidin AZDSouza AMSchifitto GWismüller A Detecting cognitive impairment in HIV-infected individuals using mutual connectivity analysis of resting state functional MRI.; Journal of neurovirology. 2020 Jan 07. Wismüller AFoxe JJSaboksayr SS Large-Scale Extended Granger Causality (lsXGC) for Classication of Autism Spectrum Disorder from Resting-State Functional MRI; Proc. of SPIE; Vol 113141Y. 2020 Jan 01. Wismüller AStockmaster L A Prospective Randomized Clinical Trial for Measuring Radiology Study Reporting Time on Artificial Intelligence-Based Detection of Intracranial Hemorrhage in Emergent Care Head CT; Proc. of SPIE; Vol 113170M. 2020 Jan 01. Saboksayr SSDSouza AMFoxe JJWismüller A Classification of Attention-Deficit/Hyperactivity Disorder from Resting-State Functional MRI with Mutual Connectivity Analysis; Proc. of SPIE; Vol 11317. 2020 Jan 01. Saboksayr SSFoxe JJWismüller A Attention-Deficit/Hyperactivity Disorder Prediction Using Graph Convolutional Networks; Proc. of SPIE; Vol 113141U. 2020 Jan 01. DSouza AMAbidin AZSchifitto GWismüller A A multivoxel pattern analysis framework with mutual connectivity analysis investigating changes in resting state connectivity in patients with HIV associated neurocognitive disorder; Magnetic Resonance Imaging; Vol 62, pp. 121-128. 2019 Jan 01. Chockanathan UDSouza AMAbidin AZSchifitto GWismüller A Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI.; Computers in biology and medicine; Vol 106. 2019 Jan 15. Chockanathan UDSouza AMAbidin AZSchifitto GWismüller A Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI; Computers in Biology and Medicine; Vol 106, pp. 24-30. 2019 Jan 01. DSouza AMAbidin AZWismüller A Classification of autism spectrum disorder from resting-state fMRI with mutual connectivity analysis; Proc. of SPIE; Vol 109531D. 2019 Jan 01. Abidin AZDsouza AMWismüller A Detecting connectivity changes in autism spectrum disorder using large-scale Granger causality; Proc. of SPIE; Vol 109490M. 2019 Jan 01. DSouza AMAbidin AZWismüller A Automated identification of thoracic pathology from chest radiographs with enhanced training pipeline; Proc. of SPIE; Vol 109503F. 2019 Jan 01. Abidin AZDar RD'Souza AMLin EPWismüller A Investigating a quantitative radiomics approach for brain tumor classification; Proc. of SPIE; Vol 109530B. 2019 Jan 01. DSouza AMAbidin AZSchifitto GWismüller A A multivoxel pattern analysis framework with mutual connectivity analysis investigating changes in resting state connectivity in patients with HIV associated neurocognitve disorder.; Magnetic resonance imaging; Vol 62. 2019 Jan. DSouza AMAbidin AZChockanathan USchifitto GWismüller A Mutual connectivity analysis of resting-state functional MRI data with local models.; NeuroImage. 2018 May 16. Abidin AZDeng BDSouza AMNagarajan MBCoan PWismüller A Deep transfer learning for characterizing chondrocyte patterns in phase contrast X-Ray computed tomography images of the human patellar cartilage.; Computers in biology and medicine; Vol 95. 2018 Apr 01. Chockanathan UDSouza AMAbidin AZSchifitto GWismüller A Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 10575. 2018 Feb. DSouza AMAbidin AZChockanathan UWismüller A Regional autonomy changes in resting-state functional MRI in patients with HIV associated neurocognitive disorder; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01. Abidin AZDSouza AMChockanathan USchifitto GWismüller A Investigating directed functional connectivity between the resting state networks of the human brain using mutual connectivity analysis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01. Chockanathan UAbidin AZDSouza AMSchifitto GWismüller A Resilient modular small-world directed brain networks in healthy subjects with large-scale Granger causality analysis of resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01. Chockanathan UDSouza AMAbidin AZSchifitto GWismüller A Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10575. 2018 Jan 01. DSouza AMAbidin AZChockanathan ULeistritz LWismüller A Investigating large-scale Granger causality analysis in presence of noise and varying sampling rate; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01. Chen LWu YDSouza AMAbidin AZWismüller AXu C MRI tumor segmentation with densely connected 3D CNN; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01. Abidin AZDSouza AMNagarajan MBWang LQiu XSchifitto GWismüller A Alteration of brain network topology in HIV-associated neurocognitive disorder: A novel functional connectivity perspective; NeuroImage. Clinical; Vol 17, pp. 768-777. 2018 Jan 01. DSouza AMAbidin AZLeistritz LWismüller A Exploring Connectivity with Large-Scale Granger Causality on Resting-State Functional MRI.; Journal of neuroscience methods. 2017 Jun 16. Deng BAbidin AZDSouza AMNagarajan MBChockanathan UCoan PWismüller A Characterizing cartilage microarchitecture on phase-contrast x-ray computed tomography using deep learning with convolutional neural networks; Proc. of SPIE - the International Society for Optical Engineering; Vol 1013412. 2017 Jan 01. Abidin AZDSouza AMChockanathan UInglese MWismüller A Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10137. 2017 Jan 01. DSouza AMAbidin AZChockanathan ULeistritz LWismüller A Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10133. 2017 Jan 01. Abidin AZChockanathan UJameson JMolthen RWismüller A Classification of micro-CT images using 3D characterization of bone canal patterns in human osteogenesis imperfecta; Proc. of SPIE - the International Society for Optical Engineering; Vol 10134. 2017 Jan 01. DSouza AMAbidin AZChockanathan UNagarajan MBWismüller A Investigating changes in resting-state connectivity from functional MRI data in patients with HIV associated neurocognitive disorder using MCA and machine learning; Proc. of SPIE- the International Society for Optical Engineering; Vol 10137. 2017 Jan 01. DSouza AMAbidin AZNagarajan MBWismüller A Mutual Connectivity Analysis (MCA) Using Generalized Radial Basis Function Neural Networks for Nonlinear Functional Connectivity Network Recovery in Resting-State Functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar 29. DSouza AMAbidin AZLeistritz LWismüller A Large-Scale Granger Causality Analysis on Resting-State Functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar. Abidin AZD'Souza AMNagarajan MBWismüller A Investigating Changes in Brain Network Properties in HIV-Associated Neurocognitive Disease (HAND) using Mutual Connectivity Analysis (MCA).; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar. Checefsky WAAbidin AZNagarajan MBBauer JSBaum TWismüller A Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9785. 2016 Feb. Schmidt CPester BSchmid-Hertel NWitte HWismüller ALeistritz L A Multivariate Granger Causality Concept towards Full Brain Functional Connectivity.; PloS one; Vol 11(4). 2016. D'Souza AMAbidin AZNagarajan MBWismüller A Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01. D'Souza AMAbidin AZLeistritz LWismüller A Large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01. Abidin AZDSouza AMNagarajan MBWismüller A Detecting altered connectivity patterns in HIV associated neurocognitive impairment using mutual connectivity analysis; Proc. of SPIE; Vol 9788. 2016 Jan 01. Abidin AZDSouza AMNagarajan MBWismüller A Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA); Proc. of SPIE; Vol 9788. 2016 Jan 01. Checefsky WAAbidin AZNagarajan MBBauer JSBaum TWismüller A Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure; Proc. of SPIE; Vol 9785. 2016 Jan 01. Abidin AZD'Souza AMNagarajan MBWismüller A Detecting Altered connectivity patterns in HIV associated neurocognitive impairment using Mutual Connectivity Analysis.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016. Nagarajan MBCoan PHuber MBDiemoz PCWismüller A Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography.; Medical & biological engineering & computing; Vol 53(11). 2015 Nov. Wismüller AWang XDSouza AMHobbs SKLeistritz LNagarajan MB Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082124). 2015 Jan 01. Wismüller ADSouza AMAbidin AZWang XHobbs SKNagarajan MB Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082106). 2015 Jan 01. Wang XNagarajan MBAbidin AZD'Souza AHobbs SKWismüller A Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082565). 2015 Jan 01. Nagarajan MBChecefsky WAAbidin AZTsai HWang XHobbs SKBauer JSBaum TWismüller A Characterizing trabecular bone structure for assessing vertebral fracture risk on volumetric quantitative computed tomography; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082059). 2015 Jan 01. Abidin AZNagarajan MBChecefsky WACoan PDiemoz PCHobbs SKHuber MBWismüller A Volumetric characterization of human patellar cartilage matrix on phase contrast x-ray computed tomography; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082084). 2015 Jan 01.