Publications

• 1. Abidin AZ
  2. DSouza AM
  3. Schifitto G
  4. Wismüller A
  Detecting cognitive impairment in HIV-infected individuals using mutual connectivity analysis of resting state functional MRI.; Journal of neurovirology. 2020 Jan 07.
• 1. DSouza AM
  2. Abidin AZ
  3. Schifitto G
  4. Wismüller A
  A multivoxel pattern analysis framework with mutual connectivity analysis investigating changes in resting state connectivity in patients with HIV associated neurocognitive disorder; Magnetic Resonance Imaging; Vol 62, pp. 121-128. 2019 Jan 01.
• 1. Chockanathan U
  2. DSouza AM
  3. Abidin AZ
  4. Schifitto G
  5. Wismüller A
  Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI.; Computers in biology and medicine; Vol 106. 2019 Jan 15.
• 1. Chockanathan U
  2. DSouza AM
  3. Abidin AZ
  4. Schifitto G
  5. Wismüller A
  Automated diagnosis of HIV-associated neurocognitive disorders using large-scale Granger causality analysis of resting-state functional MRI; Computers in Biology and Medicine; Vol 106, pp. 24-30. 2019 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Wismüller A
  Classification of autism spectrum disorder from resting-state fMRI with mutual connectivity analysis; Proc. of SPIE; Vol 109531D. 2019 Jan 01.
• 1. Abidin AZ
  2. Dsouza AM
  3. Wismüller A
  Detecting connectivity changes in autism spectrum disorder using large-scale Granger causality; Proc. of SPIE; Vol 109490M. 2019 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Wismüller A
  Automated identification of thoracic pathology from chest radiographs with enhanced training pipeline; Proc. of SPIE; Vol 109503F. 2019 Jan 01.
• 1. Abidin AZ
  2. Dar R
  3. D'Souza AM
  4. Lin EP
  5. Wismüller A
  Investigating a quantitative radiomics approach for brain tumor classification; Proc. of SPIE; Vol 109530B. 2019 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Schifitto G
  4. Wismüller A
  A multivoxel pattern analysis framework with mutual connectivity analysis investigating changes in resting state connectivity in patients with HIV associated neurocognitve disorder.; Magnetic resonance imaging; Vol 62. 2019 Jan.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Schifitto G
  5. Wismüller A
  Mutual connectivity analysis of resting-state functional MRI data with local models.; NeuroImage. 2018 May 16.
• 1. Abidin AZ
  2. Deng B
  3. DSouza AM
  4. Nagarajan MB
  5. Coan P
  6. Wismüller A
  Deep transfer learning for characterizing chondrocyte patterns in phase contrast X-Ray computed tomography images of the human patellar cartilage.; Computers in biology and medicine; Vol 95. 2018 Apr 01.
• 1. Chockanathan U
  2. DSouza AM
  3. Abidin AZ
  4. Schifitto G
  5. Wismüller A
  Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 10575. 2018 Feb.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Wismüller A
  Regional autonomy changes in resting-state functional MRI in patients with HIV associated neurocognitive disorder; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Chockanathan U
  4. Schifitto G
  5. Wismüller A
  Investigating directed functional connectivity between the resting state networks of the human brain using mutual connectivity analysis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
• 1. Chockanathan U
  2. Abidin AZ
  3. DSouza AM
  4. Schifitto G
  5. Wismüller A
  Resilient modular small-world directed brain networks in healthy subjects with large-scale Granger causality analysis of resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
• 1. Chockanathan U
  2. DSouza AM
  3. Abidin AZ
  4. Schifitto G
  5. Wismüller A
  Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10575. 2018 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Leistritz L
  5. Wismüller A
  Investigating large-scale Granger causality analysis in presence of noise and varying sampling rate; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
• 1. Chen L
  2. Wu Y
  3. DSouza AM
  4. Abidin AZ
  5. Wismüller A
  6. Xu C
  MRI tumor segmentation with densely connected 3D CNN; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Nagarajan MB
  4. Wang L
  5. Qiu X
  6. Schifitto G
  7. Wismüller A
  Alteration of brain network topology in HIV-associated neurocognitive disorder: A novel functional connectivity perspective; NeuroImage. Clinical; Vol 17, pp. 768-777. 2018 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Leistritz L
  4. Wismüller A
  Exploring Connectivity with Large-Scale Granger Causality on Resting-State Functional MRI.; Journal of neuroscience methods. 2017 Jun 16.
• 1. Deng B
  2. Abidin AZ
  3. DSouza AM
  4. Nagarajan MB
  5. Chockanathan U
  6. Coan P
  7. Wismüller A
  Characterizing cartilage microarchitecture on phase-contrast x-ray computed tomography using deep learning with convolutional neural networks; Proc. of SPIE - the International Society for Optical Engineering; Vol 1013412. 2017 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Chockanathan U
  4. Inglese M
  5. Wismüller A
  Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Leistritz L
  5. Wismüller A
  Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10133. 2017 Jan 01.
• 1. Abidin AZ
  2. Chockanathan U
  3. Jameson J
  4. Molthen R
  5. Wismüller A
  Classification of micro-CT images using 3D characterization of bone canal patterns in human osteogenesis imperfecta; Proc. of SPIE - the International Society for Optical Engineering; Vol 10134. 2017 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Chockanathan U
  4. Nagarajan MB
  5. Wismüller A
  Investigating changes in resting-state connectivity from functional MRI data in patients with HIV associated neurocognitive disorder using MCA and machine learning; Proc. of SPIE- the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
• 1. DSouza AM
  2. Abidin AZ
  3. Nagarajan MB
  4. Wismüller A
  Mutual Connectivity Analysis (MCA) Using Generalized Radial Basis Function Neural Networks for Nonlinear Functional Connectivity Network Recovery in Resting-State Functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar 29.
• 1. DSouza AM
  2. Abidin AZ
  3. Leistritz L
  4. Wismüller A
  Large-Scale Granger Causality Analysis on Resting-State Functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar.
• 1. Abidin AZ
  2. D'Souza AM
  3. Nagarajan MB
  4. Wismüller A
  Investigating Changes in Brain Network Properties in HIV-Associated Neurocognitive Disease (HAND) using Mutual Connectivity Analysis (MCA).; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016 Mar.
• 1. Checefsky WA
  2. Abidin AZ
  3. Nagarajan MB
  4. Bauer JS
  5. Baum T
  6. Wismüller A
  Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9785. 2016 Feb.
• 1. Schmidt C
  2. Pester B
  3. Schmid-Hertel N
  4. Witte H
  5. Wismüller A
  6. Leistritz L
  A Multivariate Granger Causality Concept towards Full Brain Functional Connectivity.; PloS one; Vol 11(4). 2016.
• 1. D'Souza AM
  2. Abidin AZ
  3. Nagarajan MB
  4. Wismüller A
  Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. D'Souza AM
  2. Abidin AZ
  3. Leistritz L
  4. Wismüller A
  Large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Nagarajan MB
  4. Wismüller A
  Detecting altered connectivity patterns in HIV associated neurocognitive impairment using mutual connectivity analysis; Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. Abidin AZ
  2. DSouza AM
  3. Nagarajan MB
  4. Wismüller A
  Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA); Proc. of SPIE; Vol 9788. 2016 Jan 01.
• 1. Checefsky WA
  2. Abidin AZ
  3. Nagarajan MB
  4. Bauer JS
  5. Baum T
  6. Wismüller A
  Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure; Proc. of SPIE; Vol 9785. 2016 Jan 01.
• 1. Abidin AZ
  2. D'Souza AM
  3. Nagarajan MB
  4. Wismüller A
  Detecting Altered connectivity patterns in HIV associated neurocognitive impairment using Mutual Connectivity Analysis.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9788. 2016.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography.; Medical & biological engineering & computing; Vol 53(11). 2015 Nov.
• 1. Wismüller A
  2. Wang X
  3. DSouza AM
  4. Hobbs SK
  5. Leistritz L
  6. Nagarajan MB
  Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082124). 2015 Jan 01.
• 1. Wismüller A
  2. DSouza AM
  3. Abidin AZ
  4. Wang X
  5. Hobbs SK
  6. Nagarajan MB
  Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082106). 2015 Jan 01.
• 1. Wang X
  2. Nagarajan MB
  3. Abidin AZ
  4. D'Souza A
  5. Hobbs SK
  6. Wismüller A
  Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082565). 2015 Jan 01.
• 1. Nagarajan MB
  2. Checefsky WA
  3. Abidin AZ
  4. Tsai H
  5. Wang X
  6. Hobbs SK
  7. Bauer JS
  8. Baum T
  9. Wismüller A
  Characterizing trabecular bone structure for assessing vertebral fracture risk on volumetric quantitative computed tomography; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082059). 2015 Jan 01.
• 1. Abidin AZ
  2. Nagarajan MB
  3. Checefsky WA
  4. Coan P
  5. Diemoz PC
  6. Hobbs SK
  7. Huber MB
  8. Wismüller A
  Volumetric characterization of human patellar cartilage matrix on phase contrast x-ray computed tomography; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082084). 2015 Jan 01.
• 1. Wismüller A
  2. DSouza AM
  3. Abidin AZ
  4. Wang X
  5. Hobbs SK
  6. Nagarajan MB
  Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015 Mar.
• 1. Abidin AZ
  2. Nagarajan MB
  3. Checefsky WA
  4. Coan P
  5. Diemoz PC
  6. Hobbs SK
  7. Huber MB
  8. Wismüller A
  Volumetric Characterization of Human Patellar Cartilage Matrix on Phase Contrast X-Ray Computed Tomography.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015 Feb.
• 1. Wismüller A
  2. Abidin AZ
  3. DSouza AM
  4. Wang X
  5. Hobbs SK
  6. Leistritz L
  7. Nagarajan MB
  Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015 Feb.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography.; PloS one; Vol 10(2). 2015.
• 1. Nagarajan MB
  2. Coan P
  3. Huber MB
  4. Diemoz PC
  5. Wismüller A
  Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography; PLOS One; Vol D-14-25225R1. 2015 Jan 01.
• 1. Nagarajan MB
  2. Checefsky WA
  3. Abidin AZ
  4. Tsai H
  5. Wang X
  6. Hobbs SK
  7. Bauer JS
  8. Baum T
  9. Wismüller A
  Characterizing Trabecular Bone structure for Assessing Vertebral Fracture Risk on Volumetric Quantitative Computed Tomography.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015.
• 1. Wang X
  2. Nagarajan MB
  3. Abidin AZ
  4. DSouza A
  5. Hobbs SK
  6. Wismüller A
  Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015.
• 1. Nagarajan MB
  2. De T
  3. Lochmüller EM
  4. Eckstein F
  5. Wismüller A
  Using Anisotropic 3D Minkowski Functionals for Trabecular Bone Characterization and Biomechanical Strength Prediction in Proximal Femur Specimens.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9038. 2014 Apr 09.