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URMC / Labs / Wismüller Lab / Publications

Publications

    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Schifitto G
    5. Wismüller A
    Mutual connectivity analysis of resting-state functional MRI data with local models.; NeuroImage. 2018 May 16.
    1. Abidin AZ
    2. Deng B
    3. DSouza AM
    4. Nagarajan MB
    5. Coan P
    6. Wismüller A
    Deep transfer learning for characterizing chondrocyte patterns in phase contrast X-Ray computed tomography images of the human patellar cartilage.; Computers in biology and medicine; Vol 95. 2018 Apr 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Wismüller A
    Regional autonomy changes in resting-state functional MRI in patients with HIV associated neurocognitive disorder; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Chockanathan U
    4. Schifitto G
    5. Wismüller A
    Investigating directed functional connectivity between the resting state networks of the human brain using mutual connectivity analysis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
    1. Chockanathan U
    2. Abidin AZ
    3. DSouza AM
    4. Schifitto G
    5. Wismüller A
    Resilient modular small-world directed brain networks in healthy subjects with large-scale Granger causality analysis of resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
    1. Chockanathan U
    2. DSouza AM
    3. Abidin AZ
    4. Schifitto G
    5. Wismüller A
    Identification and functional characterization of HIV-associated neurocognitive disorders with large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10575. 2018 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Leistritz L
    5. Wismüller A
    Investigating large-scale Granger causality analysis in presence of noise and varying sampling rate; Proc. of SPIE - the International Society for Optical Engineering; Vol 10578. 2018 Jan 01.
    1. Chen L
    2. Wu Y
    3. DSouza AM
    4. Abidin AZ
    5. Wismüller A
    6. Xu C
    MRI tumor segmentation with densely connected 3D CNN; Proc. of SPIE - the International Society for Optical Engineering; Vol 10574. 2018 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wang L
    5. Qiu X
    6. Schifitto G
    7. Wismüller A
    Alteration of brain network topology in HIV-associated neurocognitive disorder: A novel functional connectivity perspective; NeuroImage. Clinical; Vol 17, pp. 768-777. 2018 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    Exploring Connectivity with Large-Scale Granger Causality on Resting-State Functional MRI.; Journal of neuroscience methods. 2017 Jun 16.
    1. Deng B
    2. Abidin AZ
    3. DSouza AM
    4. Nagarajan MB
    5. Chockanathan U
    6. Coan P
    7. Wismüller A
    Characterizing cartilage microarchitecture on phase-contrast x-ray computed tomography using deep learning with convolutional neural networks; Proc. of SPIE - the International Society for Optical Engineering; Vol 1013412. 2017 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Chockanathan U
    4. Inglese M
    5. Wismüller A
    Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis; Proc. of SPIE - the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Leistritz L
    5. Wismüller A
    Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE - the International Society for Optical Engineering; Vol 10133. 2017 Jan 01.
    1. Abidin AZ
    2. Chockanathan U
    3. Jameson J
    4. Molthen R
    5. Wismüller A
    Classification of micro-CT images using 3D characterization of bone canal patterns in human osteogenesis imperfecta; Proc. of SPIE - the International Society for Optical Engineering; Vol 10134. 2017 Jan 01.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Nagarajan MB
    5. Wismüller A
    Investigating changes in resting-state connectivity from functional MRI data in patients with HIV associated neurocognitive disorder using MCA and machine learning; Proc. of SPIE- the International Society for Optical Engineering; Vol 10137. 2017 Jan 01.
    1. Schmidt C
    2. Pester B
    3. Schmid-Hertel N
    4. Witte H
    5. Wismüller A
    6. Leistritz L
    A Multivariate Granger Causality Concept towards Full Brain Functional Connectivity.; PloS one; Vol 11(4). 2016.
    1. D'Souza AM
    2. Abidin AZ
    3. Nagarajan MB
    4. Wismüller A
    Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. D'Souza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    Large-scale Granger causality analysis on resting-state functional MRI; Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wismüller A
    Detecting altered connectivity patterns in HIV associated neurocognitive impairment using mutual connectivity analysis; Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wismüller A
    Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA); Proc. of SPIE; Vol 9788. 2016 Jan 01.
    1. Checefsky WA
    2. Abidin AZ
    3. Nagarajan MB
    4. Bauer JS
    5. Baum T
    6. Wismüller A
    Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure; Proc. of SPIE; Vol 9785. 2016 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography.; Medical & biological engineering & computing; Vol 53(11). 2015 Nov.
    1. Wismüller A
    2. Wang X
    3. DSouza AM
    4. Hobbs SK
    5. Leistritz L
    6. Nagarajan MB
    Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082124). 2015 Jan 01.
    1. Wismüller A
    2. DSouza AM
    3. Abidin AZ
    4. Wang X
    5. Hobbs SK
    6. Nagarajan MB
    Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082106). 2015 Jan 01.
    1. Wang X
    2. Nagarajan MB
    3. Abidin AZ
    4. D'Souza A
    5. Hobbs SK
    6. Wismüller A
    Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082565). 2015 Jan 01.
    1. Nagarajan MB
    2. Checefsky WA
    3. Abidin AZ
    4. Tsai H
    5. Wang X
    6. Hobbs SK
    7. Bauer JS
    8. Baum T
    9. Wismüller A
    Characterizing trabecular bone structure for assessing vertebral fracture risk on volumetric quantitative computed tomography; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082059). 2015 Jan 01.
    1. Abidin AZ
    2. Nagarajan MB
    3. Checefsky WA
    4. Coan P
    5. Diemoz PC
    6. Hobbs SK
    7. Huber MB
    8. Wismüller A
    Volumetric characterization of human patellar cartilage matrix on phase contrast x-ray computed tomography; Proc. of SPIE; Vol 9417(doi:10.1117/12.2082084). 2015 Jan 01.
    1. Abidin AZ
    2. Nagarajan MB
    3. Checefsky WA
    4. Coan P
    5. Diemoz PC
    6. Hobbs SK
    7. Huber MB
    8. Wismüller A
    Volumetric Characterization of Human Patellar Cartilage Matrix on Phase Contrast X-Ray Computed Tomography.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9417. 2015 Feb.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography.; PloS one; Vol 10(2). 2015.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography; PLOS One; Vol D-14-25225R1. 2015 Jan 01.
    1. Yang CC
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller E
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    Improving bone strength prediction in human proximal femur specimens through geometrical characterization of trabecular bone microarchitecture and support vector regression.; Journal of electronic imaging; Vol 23(1). 2014 Feb 4.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    Computer-aided diagnosis for phase-contrast X-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features.; Journal of digital imaging; Vol 27(1). 2014 Feb.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Phase contrast imaging X-ray computed tomography: Quantitative characterization of human patellar cartilage matrix with topological and geometrical features.; Proceedings of SPIE--the International Society for Optical Engineering; Vol 9038. 2014 Feb.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    Classification of small lesions on dynamic breast MRI: Integrating dimension reduction and out-of-sample extension into CADx methodology.; Artificial intelligence in medicine; Vol 60(1). 2014 Jan.
    1. Yang C
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller E
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    Improving bone strength prediction in human proximal femur specimens through geometrical characterization of trabecular bone micro-architecture and support vector regression; Journal of Electronic Imaging; Vol 23(1). 2014 Jan 01.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    Classification of small lesions on dynamic breast MRI: Integrating dimension reduction and out-of-sample extension into CADx methodology; Artificial Intelligence in Medicine; Vol 60(1), pp. 65-77. 2014 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismuller A
    Computer-aided diagnosis in phase contrast imaging X-ray computed tomography for quantitative characterization of ex vivo human patellar cartilage.; IEEE transactions on bio-medical engineering; Vol 60(10). 2013 Oct.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    Classification of small lesions in dynamic breast MRI: Eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement over time.; Machine vision and applications; Vol 24(7). 2013 Oct 1.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    Classification of Small Lesions in Breast MRI: Evaluating The Role of Dynamically Extracted Texture Features Through Feature Selection.; Journal of medical and biological engineering; Vol 33(1). 2013 Jan 1.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    Classification of small lesions in dynamic breast MRI: eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement; Machine Vision and Applications; Vol 24(7), pp. 1371-1381. 2013 Jan 01.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    Classification of small lesions on breast MRI: evaluating the role of dynamically extracted texture features through feature selection; Journal of Medical and Biological Engineering; Vol 33(1), pp. 59-68. 2013 Jan 01.
    1. Bhole C
    2. Pal C
    3. Rim D
    4. Wismüller A
    3D segmentation of abdominal CT imagery with graphical models, conditional random fields and learning; Machine Vision and Applications. 2013 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    Computer-aided diagnosis for phase-contrast x-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features; Journal of Digital Imaging. 2013 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    Computer-aided diagnosis in phase contrast imaging x-ray computed tomography for quantitative characterization of ex vivo human patellar cartilage; IEEE Transactions on Biomedical Engineering; Vol 60(10), pp. 2896-2903. 2013 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast x-ray computed tomography; Computerized Medical Imaging and Graphics. 2013 Jan 01.
    1. Nagarajan MB
    2. De T
    3. Lochmüller EM
    4. Eckstein F
    5. Wismüller A
    Using anisotropic 3D Minkowski functionals for trabecular bone characterization and biomechanical strength prediction in proximal femur specimens; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
    1. Wang X
    2. Nagarajan MB
    3. Conover D
    4. Ning R
    5. O'Connell A
    6. Wismüller A
    Investigating the use of texture features for analysis of breast lesions on contrast-enhanced cone beam CT; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
    1. Yang C
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller EM
    9. Link TM
    10. Wismüller A
    Predicting the biomechanical strength of proximal femur specimens with Minkowski functionals and support vector regression; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    Phase contrast imaging X-ray computed tomography: Quantitative characterization of human patellar cartilage matrix with topological and geometrical features; Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014. 2013 Jan 01.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    Characterizing healthy and osteoarthritic knee cartilage on phase contrast CT with geometric texture features; Proceedings of SPIE; Vol 8672. 2013 Jan 01.