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URMC / Labs / Wismüller Lab / Publications

Publications

    1. DSouza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    (2017 Jun 16). Exploring Connectivity with Large-Scale Granger Causality on Resting-State Functional MRI. Journal of neuroscience methods.
    1. Deng B
    2. Abidin AZ
    3. DSouza AM
    4. Nagarajan MB
    5. Chockanathan U
    6. Coan P
    7. Wismüller A
    (2017 Jan 01). Characterizing cartilage microarchitecture on phase-contrast x-ray computed tomography using deep learning with convolutional neural networks Accepted for publication. Proc. of SPIE.
    1. Abidin AZ
    2. DSouza AM
    3. Chockanathan U
    4. Inglese M
    5. Wismüller A
    (2017 Jan 01). Using large-scale Granger causality to study changes in brain network properties in the Clinically Isolated Syndrome (CIS) stage of multiple sclerosis Accepted for publication. Proc. of SPIE.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Leistritz L
    5. Wismüller A
    (2017 Jan 01). Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI Accepted for publication. Proc. of SPIE.
    1. Abidin AZ
    2. Chockanathan U
    3. Jameson J
    4. Molthen R
    5. Wismüller A
    (2017 Jan 01). Classification of micro-CT images using 3D characterization of bone canal patterns in human osteogenesis imperfecta Accepted for publication. Proc. of SPIE.
    1. DSouza AM
    2. Abidin AZ
    3. Chockanathan U
    4. Nagarajan MB
    5. Wismüller A
    (2017 Jan 01). Investigating changes in resting-state connectivity from functional MRI data in patients with HIV associated neurocognitive disorder using MCA and machine learning Accepted for publication. Proc. of SPIE.
    1. Schmidt C
    2. Pester B
    3. Schmid-Hertel N
    4. Witte H
    5. Wismüller A
    6. Leistritz L
    (2016). A Multivariate Granger Causality Concept towards Full Brain Functional Connectivity. PloS one.
    1. D'Souza AM
    2. Abidin AZ
    3. Nagarajan MB
    4. Wismüller A
    (2016 Jan 01). Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI Proc. of SPIE.
    1. D'Souza AM
    2. Abidin AZ
    3. Leistritz L
    4. Wismüller A
    (2016 Jan 01). Large-scale Granger causality analysis on resting-state functional MRI Proc. of SPIE.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wismüller A
    (2016 Jan 01). Detecting altered connectivity patterns in HIV associated neurocognitive impairment using mutual connectivity analysis Proc. of SPIE.
    1. Abidin AZ
    2. DSouza AM
    3. Nagarajan MB
    4. Wismüller A
    (2016 Jan 01). Investigating changes in brain network properties in HIV-associated neurocognitive disease (HAND) using mutual connectivity analysis (MCA) Proc. of SPIE.
    1. Checefsky WA
    2. Abidin AZ
    3. Nagarajan MB
    4. Bauer JS
    5. Baum T
    6. Wismüller A
    (2016 Jan 01). Assessing vertebral fracture risk on volumetric quantitative computed tomography by geometric characterization of trabecular bone structure Proc. of SPIE.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    (2015 Nov). Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography. Medical & biological engineering & computing.
    1. Wismüller A
    2. Wang X
    3. DSouza AM
    4. Hobbs SK
    5. Leistritz L
    6. Nagarajan MB
    (2015 Jan 01). Nonlinear Functional Connectivity Network Recovery in the Human Brain with Mutual Connectivity Analysis (MCA): Convergent Cross-Mapping and Non-Metric Clustering Proc. of SPIE.
    1. Wismüller A
    2. DSouza AM
    3. Abidin AZ
    4. Wang X
    5. Hobbs SK
    6. Nagarajan MB
    (2015 Jan 01). Functional Connectivity Analysis in Resting State fMRI with Echo-State Networks and Non-Metric Clustering for Network Structure Recovery Proc. of SPIE.
    1. Wang X
    2. Nagarajan MB
    3. Abidin AZ
    4. D'Souza A
    5. Hobbs SK
    6. Wismüller A
    (2015 Jan 01). Investigating the use of mutual information and non-metric clustering for functional connectivity analysis on resting-state functional MRI Proc. of SPIE.
    1. Nagarajan MB
    2. Checefsky WA
    3. Abidin AZ
    4. Tsai H
    5. Wang X
    6. Hobbs SK
    7. Bauer JS
    8. Baum T
    9. Wismüller A
    (2015 Jan 01). Characterizing trabecular bone structure for assessing vertebral fracture risk on volumetric quantitative computed tomography Proc. of SPIE.
    1. Abidin AZ
    2. Nagarajan MB
    3. Checefsky WA
    4. Coan P
    5. Diemoz PC
    6. Hobbs SK
    7. Huber MB
    8. Wismüller A
    (2015 Jan 01). Volumetric characterization of human patellar cartilage matrix on phase contrast x-ray computed tomography Proc. of SPIE.
    1. Abidin AZ
    2. Nagarajan MB
    3. Checefsky WA
    4. Coan P
    5. Diemoz PC
    6. Hobbs SK
    7. Huber MB
    8. Wismüller A
    (2015 Feb). Volumetric Characterization of Human Patellar Cartilage Matrix on Phase Contrast X-Ray Computed Tomography. Proceedings of SPIE--the International Society for Optical Engineering.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    (2015). Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography. PloS one.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    (2015 Jan 01). Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast X-ray computed tomography PLOS One.
    1. Yang CC
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller E
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    (2014 Feb 4). Improving bone strength prediction in human proximal femur specimens through geometrical characterization of trabecular bone microarchitecture and support vector regression. Journal of electronic imaging.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    (2014 Feb). Computer-aided diagnosis for phase-contrast X-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features. Journal of digital imaging.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    (2014 Feb). Phase contrast imaging X-ray computed tomography: Quantitative characterization of human patellar cartilage matrix with topological and geometrical features. Proceedings of SPIE--the International Society for Optical Engineering.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2014 Jan). Classification of small lesions on dynamic breast MRI: Integrating dimension reduction and out-of-sample extension into CADx methodology. Artificial intelligence in medicine.
    1. Yang C
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller E
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    (2014 Jan 01). Improving bone strength prediction in human proximal femur specimens through geometrical characterization of trabecular bone micro-architecture and support vector regression Journal of Electronic Imaging.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2014 Jan 01). Classification of small lesions on dynamic breast MRI: Integrating dimension reduction and out-of-sample extension into CADx methodology Artificial Intelligence in Medicine.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismuller A
    (2013 Oct). Computer-aided diagnosis in phase contrast imaging X-ray computed tomography for quantitative characterization of ex vivo human patellar cartilage. IEEE transactions on bio-medical engineering.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2013 Oct 1). Classification of small lesions in dynamic breast MRI: Eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement over time. Machine vision and applications.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2013 Jan 1). Classification of Small Lesions in Breast MRI: Evaluating The Role of Dynamically Extracted Texture Features Through Feature Selection. Journal of medical and biological engineering.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2013 Jan 01). Classification of small lesions in dynamic breast MRI: eliminating the need for precise lesion segmentation through spatio-temporal analysis of contrast enhancement Machine Vision and Applications.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2013 Jan 01). Classification of small lesions on breast MRI: evaluating the role of dynamically extracted texture features through feature selection Journal of Medical and Biological Engineering.
    1. Bhole C
    2. Pal C
    3. Rim D
    4. Wismüller A
    (2013 Jan 01). 3D segmentation of abdominal CT imagery with graphical models, conditional random fields and learning Machine Vision and Applications.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    (2013 Jan 01). Computer-aided diagnosis for phase-contrast x-ray computed tomography: quantitative characterization of human patellar cartilage with high-dimensional geometric features Journal of Digital Imaging.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    (2013 Jan 01). Computer-aided diagnosis in phase contrast imaging x-ray computed tomography for quantitative characterization of ex vivo human patellar cartilage IEEE Transactions on Biomedical Engineering.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    (2013 Jan 01). Integrating dimension reduction and out-of-sample extension in automated classification of ex vivo human patellar cartilage on phase contrast x-ray computed tomography Computerized Medical Imaging and Graphics.
    1. Nagarajan MB
    2. De T
    3. Lochmüller EM
    4. Eckstein F
    5. Wismüller A
    (2013 Jan 01). Using anisotropic 3D Minkowski functionals for trabecular bone characterization and biomechanical strength prediction in proximal femur specimens Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014.
    1. Wang X
    2. Nagarajan MB
    3. Conover D
    4. Ning R
    5. O'Connell A
    6. Wismüller A
    (2013 Jan 01). Investigating the use of texture features for analysis of breast lesions on contrast-enhanced cone beam CT Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014.
    1. Yang C
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller EM
    9. Link TM
    10. Wismüller A
    (2013 Jan 01). Predicting the biomechanical strength of proximal femur specimens with Minkowski functionals and support vector regression Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Wismüller A
    (2013 Jan 01). Phase contrast imaging X-ray computed tomography: Quantitative characterization of human patellar cartilage matrix with topological and geometrical features Proceedings of SPIE: Accepted for publication at SPIE Medical Imaging 2014.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    (2013 Jan 01). Characterizing healthy and osteoarthritic knee cartilage on phase contrast CT with geometric texture features Proceedings of SPIE.
    1. Wismüller A
    2. De T
    3. Lochmüller EM
    4. Eckstein F
    5. Nagarajan MB
    (2013 Jan 01). Introducing anisotropic Minkowski functionals and quantitative anisotropy measures for local structure analysis in biomedical imaging Proceedings of SPIE.
    1. Yang C
    2. Nagarajan MB
    3. Huber MB
    4. Carballido-Gamio J
    5. Bauer JS
    6. Baum T
    7. Eckstein F
    8. Lochmüller EM
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    (2013 Jan 01). Predicting the biomechanical strength of proximal femur specimens through high dimensional geometric features and support vector regression Proceedings of SPIE.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Diemoz PC
    5. Glaser C
    6. Wismüller A
    (2013 Jan 01). Phase contrast computed tomography: classification of osteoarthritic and healthy chondrocyte patterns in human patella cartilage through local scaling properties Radiological Society of North America Scientific Meeting: Accepted for publication..
    1. Yang C
    2. Huber MB
    3. Carballido-Gamio J
    4. Bauer JS
    5. Baum T
    6. Nagarajan MB
    7. Eckstein F
    8. Lochmüller EM
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    (2013 Jan 01). Evaluating proximal femur bone strength prediction by advanced characterization of trabecular microarchitecture using scaling index computation and support vector regression Radiological Society of North America Scientific Meeting: Accepted for publication.
    1. Huber MB
    2. Bunte K
    3. Nagarajan MB
    4. Biehl M
    5. Ray LA
    6. Wismüller A
    (2012 Oct). Texture feature ranking with relevance learning to classify interstitial lung disease patterns. Artificial intelligence in medicine.
    1. Huber MB
    2. Bunte K
    3. Nagarajan MB
    4. Biehl M
    5. Ray LA
    6. Wismüller A
    (2012 Jan 01). Texture feature ranking with relevance learning to classify interstitial lung disease patterns Artificial Intelligence in Medicine.
    1. Nagarajan MB
    2. Huber MB
    3. Schlossbauer T
    4. Leinsinger G
    5. Krol A
    6. Wismüller A
    (2012 Jan 01). Classification of small lesions on dynamic breast MRI: integrating dimension reduction and out-of-sample extension into CADx methodology Artificial Intelligence in Medicine.
    1. Nagarajan MB
    2. Coan P
    3. Huber MB
    4. Yang C
    5. Glaser C
    6. Reiser MF
    7. Wismüller A
    (2012 Jan 01). Characterization of healthy and osteoarthritic chondrocyte cell patterns on phase contrast CT images of the knee cartilage matrix. Proceedings of SPIE.
    1. Huber MB
    2. Yang C
    3. Carballido-Gamio J
    4. Bauer JS
    5. Baum T
    6. Nagarajan MB
    7. Eckstein F
    8. Lochmüller E
    9. Majumdar S
    10. Link TM
    11. Wismüller A
    (2012 Jan 01). Predicting the biomechanical strength of proximal femur specimens with bone mineral density features and support vector regression Proceedings of SPIE.