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Benjamin L. Miller, Ph.D.


Showing all 137 journal articles & 10 books available

Journal Articles

Passaro VMN, Semenova Y, Miller BL. "Feature Papers in Optical Sensors 2022." Sensors.. 2023 Apr 3; 23(7)Epub 2023 Apr 03.

Bryan MR, Butt JN, Bucukovski J, Miller BL. "Biosensing with Silicon Nitride Microring Resonators Integrated with an On-Chip Filter Bank Spectrometer." ACS sensors.. 2023 Feb 14; Epub 2023 Feb 14.

Cognetti JS, Moen MT, Brewer MG, Bryan MR, Tice JD, McGrath JL, Miller BL. "A photonic biosensor-integrated tissue chip platform for real-time sensing of lung epithelial inflammatory markers." Lab on a chip.. 2023 Jan 3; Epub 2023 Jan 03.

Klose AM, Kosoy G, Miller BL. "Arrayed Imaging Reflectometry monitoring of anti-viral antibody production throughout vaccination and breakthrough Covid-19." PloS one.. 2023 18(2):e0277846. Epub 2023 Feb 07.

Wang P, Miller BL. "Waveguide-Enhanced Raman Spectroscopy (WERS): An Emerging Chip-Based Tool for Chemical and Biological Sensing." Sensors.. 2022 Nov 22; 22(23)Epub 2022 Nov 22.

Beard JW, Murty S, Caulkins C, Strenk AR, Luta EP, Hunt SL, Yates MZ, Miller BL. "Leveraging Arylboronic Acid - Cellulose Binding as a Versatile and Scalable Approach to Hydrophobic Patterning." Advanced materials technologies.. 2022 Jul; 7(7)Epub 2021 Dec 16.

Luta EP, Miller BL. "Development of Methods for Specific Capture of Biological Targets on Aluminum Substrates: Application to Spore Detection as a Model for Anthrax." Sensors.. 2022 Apr 30; 22(9)Epub 2022 Apr 30.

Brewer MG, Monticelli SR, Moran MC, Miller BL, Beck LA, Ward BM. "Conditions That Simulate the Environment of Atopic Dermatitis Enhance Susceptibility of Human Keratinocytes to Vaccinia Virus." Cells.. 2022 Apr 14; 11(8)Epub 2022 Apr 14.

Embong AK, Nguyen-Contant P, Wang J, Kanagaiah P, Chaves FA, Fitzgerald TF, Zhou Q, Kosoy G, Branche AR, Miller BL, Zand MS, Sangster MY, Topham DJ. "Formation and Expansion of Memory B Cells against Coronavirus in Acutely Infected COVID-19 Individuals." Pathogens.. 2022 Jan 29; 11(2)Epub 2022 Jan 29.

Ajalik RE, Alenchery RG, Cognetti JS, Zhang VZ, McGrath JL, Miller BL, Awad HA. "Human Organ-on-a-Chip Microphysiological Systems to Model Musculoskeletal Pathologies and Accelerate Therapeutic Discovery." Frontiers in bioengineering and biotechnology.. 2022 10:846230. Epub 2022 Mar 14.

Arévalo DM, Anokhina VS, Swart OLR, Miller BL. "Expanding the known structure space for RNA binding: a test of 2,5-diketopiperazine." Organic & biomolecular chemistry.. 2021 Dec 20; Epub 2021 Dec 20.

Klose AM, Daiss JL, Ho L, Beck CA, Striemer CC, Muthukrishnan G, Miller BL. "StaphAIR: A Label-Free Antigen Microarray Approach to Detecting Anti- Antibody Responses in Orthopedic Infections." Analytical chemistry.. 2021 Oct 1; Epub 2021 Oct 01.

Cognetti JS, Miller BL. "Monitoring Serum Spike Protein with Disposable Photonic Biosensors Following SARS-CoV-2 Vaccination." Sensors.. 2021 Aug 31; 21(17)Epub 2021 Aug 31.

Anokhina VS, Miller BL. "Targeting Ribosomal Frameshifting as an Antiviral Strategy: From HIV-1 to SARS-CoV-2." Accounts of chemical research.. 2021 Aug 17; Epub 2021 Aug 17.

Cognetti JS, Steiner DJ, Abedin M, Bryan MR, Shanahan C, Tokranova N, Young E, Klose AM, Zavriyev A, Judy N, Piorek B, Meinhart C, Jakubowicz R, Warren H, Cady NC, Miller BL. "Disposable photonics for cost-effective clinical bioassays: application to COVID-19 antibody testing." Lab on a chip.. 2021 Jun 23; Epub 2021 Jun 23.

Zhang H, Klose AM, Miller BL. "Label-Free, Multiplex Glycan Microarray Biosensor for Influenza Virus Detection." Bioconjugate chemistry.. 2021 Feb 9; Epub 2021 Feb 09.

Klose AM, Miller BL. "A Stable Biotin-Streptavidin Surface Enables Multiplex, Label-Free Protein Detection by Aptamer and Aptamer-Protein Arrays Using Arrayed Imaging Reflectometry." Sensors.. 2020 Oct 10; 20(20)Epub 2020 Oct 10.

Steiner DJ, Cognetti JS, Luta EP, Klose AM, Bucukovski J, Bryan MR, Schmuke JJ, Nguyen-Contant P, Sangster MY, Topham DJ, Miller BL. "Array-based analysis of SARS-CoV-2, other coronaviruses, and influenza antibodies in convalescent COVID-19 patients." Biosensors & bioelectronics.. 2020 Sep 21; 169:112643. Epub 2020 Sep 21.

Chen W, Fitzpatrick J, Monroy-Trujillo JM, Sozio SM, Jaar BG, Estrella MM, Serrano J, Anokhina V, Miller BL, Melamed ML, Bushinsky DA, Parekh RS. "Associations of Serum Calciprotein Particle Size and Transformation Time with Arterial Calcification, Arterial Stiffness, and Mortality in Incident Hemodialysis Patients." American journal of kidney diseases : the official journal of the National Kidney Foundation.. 2020 Aug 12; Epub 2020 Aug 12.

Martinez-Sobrido L, Blanco-Lobo P, Rodriguez L, Fitzgerald T, Zhang H, Nguyen P, Anderson CS, Holden-Wiltse J, Bandyopadhyay S, Nogales A, DeDiego ML, Wasik BR, Miller BL, Henry C, Wilson PC, Sangster MY, Treanor JJ, Topham DJ, Byrd-Leotis L, Steinhauer DA, Cummings RD, Luczo JM, Tompkins SM, Sakamoto K, Jones CA, Steel J, Lowen AC, Danzy S, Tao H, Fink AL, Klein SL, Wohlgemuth N, Fenstermacher KJ, El Najjar F, Pekosz A, Sauer L, Lewis MK, Shaw-Saliba K, Rothman RE, Liu ZY, Chen KF, Parrish CR, Voorhees IEH, Kawaoka Y, Neumann G, Chiba S, Fan S, Hatta M, Kong H, Zhong G, Wang G, Uccellini MB, García-Sastre A, Perez DR, Ferreri LM, Herfst S, Richard M, Fouchier R, Burke D, Pattinson D, Smith DJ, Meliopoulos V, Freiden P, Livingston B, Sharp B, Cherry S, Dib JC, Yang G, Russell CJ, Barman S, Webby RJ, Krauss S, Danner A, Woodard K, Peiris M, Perera RAPM, Chan MCW, Govorkova EA, Marathe BM, Pascua PNQ, Smith G, Li YT, Thomas PG, Schultz-Cherry S. "Characterizing Emerging Canine H3 Influenza Viruses." PLoS pathogens.. 2020 Apr; 16(4):e1008409. Epub 2020 Apr 14.

Tyndall NF, Stievater TH, Kozak DA, Pruessner MW, Roxworthy BJ, Rabinovich WS, Roberts CA, McGill RA, Miller BL, Luta E, Yates MZ. "Figure-of-Merit Characterization of Hydrogen-Bond Acidic Sorbents for Waveguide-Enhanced Raman Spectroscopy." ACS sensors.. 2020 Mar 27; 5(3):831-836. Epub 2020 Mar 19.

Farrar CS, Rouin GT, Miller BL, Raeman CH, Mooney NA, Hocking DC. "A Matricryptic Conformation of the Integrin-Binding Domain of Fibronectin Regulates Platelet-Derived Growth Factor-Induced Intracellular Calcium Release." Cells.. 2019 Oct 30; 8(11)Epub 2019 Oct 30.

Brewer MG, Anderson EA, Pandya RP, De Benedetto A, Yoshida T, Hilimire TA, Martinez-Sobrido L, Beck LA, Miller BL. "Peptides Derived from the Tight Junction Protein, Claudin-1, Disrupt Skin Barrier and Promote Responsiveness to an Epicutaneous Vaccine." The Journal of investigative dermatology.. 2019 Aug 2; Epub 2019 Aug 02.

Zhang H, Miller BL. "Immunosensor-based label-free and multiplex detection of influenza viruses: State of the art." Biosensors & bioelectronics.. 2019 Jun 25; 141:111476. Epub 2019 Jun 25.

Anokhina VS, McAnany JD, Ciesla JH, Hilimire TA, Santoso N, Miao H, Miller BL. "Enhancing the ligand efficiency of anti-HIV compounds targeting frameshift-stimulating RNA." Bioorganic & medicinal chemistry.. 2019 May 9; Epub 2019 May 09.

Ghosh R, Swart O, Westgate S, Miller BL, Yates MZ. "Antibacterial Copper-Hydroxyapatite Composite Coatings via Electrochemical Synthesis." Langmuir : the ACS journal of surfaces and colloids.. 2019 Apr 18; Epub 2019 Apr 18.

McAnany JD, Miller BL. "Dynamic combinatorial chemistry as a rapid method for discovering sequence-selective RNA-binding compounds." Methods in enzymology.. 2019 623:67-84. Epub 2019 May 25.

Zhang H, Henry C, Anderson CS, Nogales A, DeDiego ML, Bucukovski J, Martinez-Sobrido L, Wilson PC, Topham DJ, Miller BL. "Crowd on a Chip: Label-Free Human Monoclonal Antibody Arrays for Serotyping Influenza." Analytical chemistry.. 2018 Aug 7; 90(15):9583-9590. Epub 2018 Jul 20.

Bucukovski J, Carter JA, Striemer CC, Müllner S, Schulte-Pelkum J, Schulz-Knappe P, Miller BL. "Label-free microarray-based detection of autoantibodies in human serum." Journal of immunological methods.. 2018 Aug; 459:44-49. Epub 2018 May 24.

Chen W, Anokhina V, Dieudonne G, Abramowitz MK, Kashyap R, Yan C, Wu TT, de Mesy Bentley KL, Miller BL, Bushinsky DA. "Patients with advanced chronic kidney disease and vascular calcification have a large hydrodynamic radius of secondary calciprotein particles." Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.. 2018 May 16; Epub 2018 May 16.

Hilimire TA, Chamberlain JM, Anokhina V, Bennett RP, Swart O, Myers JR, Ashton JM, Stewart RA, Featherston AL, Gates K, Helms ED, Smith HC, Dewhurst S, Miller BL. "HIV-1 Frameshift RNA-Targeted Triazoles Inhibit Propagation of Replication-Competent and Multi-Drug-Resistant HIV in Human Cells." ACS chemical biology.. 2017 Jun 16; 12(6):1674-1682. Epub 2017 May 05.

Baker JE, Sriram R, Miller BL. "Recognition-mediated particle detection under microfluidic flow with waveguide-coupled 2D photonic crystals: towards integrated photonic virus detectors." Lab on a chip.. 2017 May 2; 17(9):1570-1577.

Dutt S, Binney RJ, Heuer HW, Luong P, Attygalle S, Bhatt P, Marx GA, Elofson J, Tartaglia MC, Litvan I, McGinnis SM, Dickerson BC, Kornak J, Waltzman D, Voltarelli L, Schuff N, Rabinovici GD, Kramer JH, Jack CR, Miller BL, Rosen HJ, Boxer AL, . "Progression of brain atrophy in PSP and CBS over 6 months and 1 year." Neurology.. 2016 Nov 8; 87(19):2016-2025. Epub 2016 Oct 14.

McAnany JD, Reichert JP, Miller BL. "Probing the geometric constraints of RNA binding via dynamic covalent chemistry." Bioorganic & medicinal chemistry.. 2016 Sep 1; 24(17):3940-3946. Epub 2016 Feb 24.

Carter JA, Triplett E, Striemer CC, Miller BL. "A label-free, multiplex competitive assay for small molecule pollutants." Biosensors & bioelectronics.. 2016 Mar 15; 77:1-6. Epub 2015 Aug 29.

Hilimire TA, Bennett RP, Stewart RA, Garcia-Miranda P, Blume A, Becker J, Sherer N, Helms ED, Butcher SE, Smith HC, Miller BL. "N-Methylation as a Strategy for Enhancing the Affinity and Selectivity of RNA-binding Peptides: Application to the HIV-1 Frameshift-Stimulating RNA." ACS chemical biology.. 2016 Jan 15; 11(1):88-94. Epub 2015 Nov 03.

Miller BL. "mRNA regulation: A patch for a splice." Nature chemical biology.. 2015 Jul; 11(7):454-5.

Fiandaca MS, Kapogiannis D, Mapstone M, Boxer A, Eitan E, Schwartz JB, Abner EL, Petersen RC, Federoff HJ, Miller BL, Goetzl EJ. "Identification of preclinical Alzheimer's disease by a profile of pathogenic proteins in neurally derived blood exosomes: A case-control study." Alzheimer's & dementia : the journal of the Alzheimer's Association.. 2015 Jun; 11(6):600-7.e1. Epub 2014 Aug 15.

Baker JE, Sriram R, Miller BL. "Two-dimensional photonic crystals for sensitive microscale chemical and biochemical sensing." Lab on a chip.. 2015 Feb 21; 15(4):971-990.

Kapogiannis D, Boxer A, Schwartz JB, Abner EL, Biragyn A, Masharani U, Frassetto L, Petersen RC, Miller BL, Goetzl EJ. "Dysfunctionally phosphorylated type 1 insulin receptor substrate in neural-derived blood exosomes of preclinical Alzheimer's disease." FASEB journal : official publication of the Federation of American Societies for Experimental Biology.. 2015 Feb; 29(2):589-96. Epub 2014 Oct 23.

Bucukovski J, Latorre-Margalef N, Stallknecht DE, Miller BL. "A Multiplex Label-Free Approach to Avian Influenza Surveillance and Serology." PloS one.. 2015 10(8):e0134484. Epub 2015 Aug 04.

Le NT, Takei Y, Izawa-Ishizawa Y, Heo KS, Lee H, Smrcka AV, Miller BL, Ko KA, Ture S, Morrell C, Fujiwara K, Akaike M, Abe JI. "Identification of activators of ERK5 transcriptional activity by high-throughput screening and the role of endothelial ERK5 in vasoprotective effects induced by statins and antimalarial agents." The Journal of immunology : official journal of the American Association of Immunologists.. 2014 Oct 1; 193(7):3803-15. Epub 2014 Sep 03.

Hoskins JW, Ofori LO, Chen CZ, Kumar A, Sobczak K, Nakamori M, Southall N, Patnaik S, Marugan JJ, Zheng W, Austin CP, Disney MD, Miller BL, Thornton CA. "Lomofungin and dilomofungin: inhibitors of MBNL1-CUG RNA binding with distinct cellular effects." Nucleic acids research.. 2014 Jun; 42(10):6591-602. Epub 2014 May 05.

Ofori LO, Hilimire TA, Bennett RP, Brown NW, Smith HC, Miller BL. "High-affinity recognition of HIV-1 frameshift-stimulating RNA alters frameshifting in vitro and interferes with HIV-1 infectivity." Journal of medicinal chemistry.. 2014 Feb 13; 57(3):723-32. Epub 2014 Jan 15.

Yadav AR, Sriram R, Carter JA, Miller BL. "Comparative study of solution-phase and vapor-phase deposition of aminosilanes on silicon dioxide surfaces." Materials science & engineering. C, Materials for biological applications.. 2014 Feb 1; 35:283-90. Epub 2013 Nov 20.

Lifson MA, Basu Roy D, Miller BL. "Enhancing the detection limit of nanoscale biosensors via topographically selective functionalization." Analytical chemistry.. 2014 Jan 21; 86(2):1016-22. Epub 2013 Dec 27.

Yadav AR, Mace CR, Miller BL. "Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method." Analytical chemistry.. 2014 Jan 21; 86(2):1067-75. Epub 2014 Jan 09.

Pal S, Yadav AR, Lifson MA, Baker JE, Fauchet PM, Miller BL. "Selective virus detection in complex sample matrices with photonic crystal optical cavities." Biosensors & bioelectronics.. 2013 Jun 15; 44:229-34. Epub 2013 Jan 15.

Pal S, Fauchet PM, Miller BL. "1-D and 2-D photonic crystals as optical methods for amplifying biomolecular recognition." Analytical chemistry.. 2012 Nov 6; 84(21):8900-8. Epub 2012 Sep 21.

Ofori LO, Hoskins J, Nakamori M, Thornton CA, Miller BL. "From dynamic combinatorial 'hit' to lead: in vitro and in vivo activity of compounds targeting the pathogenic RNAs that cause myotonic dystrophy." Nucleic acids research.. 2012 Jul; 40(13):6380-90. Epub 2012 Apr 06.

Deane R, Singh I, Sagare AP, Bell RD, Ross NT, Larue B, Love R, Perry S, Paquette N, Deane RJ, Meenakshisundaram T, Zarcone T, Fritz G, Friedman AE, Miller BL, Zlokovic BV. "A multimodal RAGE-specific inhibitor reduces amyloid ?-mediated brain disorder in a mouse model of Alzheimer disease." The Journal of clinical investigation.. 2012 Apr; 122(4):1377-92. Epub 2012 Mar 12.

Peng HI, Strohsahl CM, Miller BL. "Microfluidic nanoplasmonic-enabled device for multiplex DNA detection." Lab on a chip.. 2012 Mar 21; 12(6):1089-93. Epub 2012 Feb 02.

Gromova AV, Ciszewski JM, Miller BL. "Ternary resin-bound Dynamic Combinatorial Chemistry." Chemical communications : Chem comm. 2012 Feb 18; 48(15):2131-3. Epub 2012 Jan 13.

Miller BL. "DCC in the development of nucleic acid targeted and nucleic acid inspired structures." Topics in current chemistry. 2012 322:107-37.

Pal S, Guillermain E, Sriram R, Miller BL, Fauchet PM. "Silicon photonic crystal nanocavity-coupled waveguides for error-corrected optical biosensing." Biosensors & bioelectronics.. 2011 Jun 15; 26(10):4024-31. Epub 2011 Apr 02.

Carter JA, Mehta SD, Mungillo MV, Striemer CC, Miller BL. "Analysis of inflammatory biomarkers by Arrayed Imaging Reflectometry." Biosensors & bioelectronics.. 2011 May 15; 26(9):3944-8. Epub 2011 Feb 24.

Sriram R, Yadav AR, Mace CR, Miller BL. "Validation of arrayed imaging reflectometry biosensor response for protein-antibody interactions: cross-correlation of theory, experiment, and complementary techniques." Analytical chemistry.. 2011 May 15; 83(10):3750-7. Epub 2011 Apr 25.

Peng HI, Miller BL. "Recent advancements in optical DNA biosensors: exploiting the plasmonic effects of metal nanoparticles." The Analyst.. 2011 Feb 7; 136(3):436-47. Epub 2010 Nov 03.

Mace CR, Topham DJ, Mosmann TR, Quataert SA, Treanor JJ, Miller BL. "Label-free, arrayed sensing of immune response to influenza antigens." Talanta.. 2011 Jan 15; 83(3):1000-5. Epub 2010 Nov 10.

Peng HI, Krauss TD, Miller BL. "Aging induced Ag nanoparticle rearrangement under ambient atmosphere and consequences for nanoparticle-enhanced DNA biosensing." Analytical chemistry.. 2010 Oct 15; 82(20):8664-70.

Palde PB, Ofori LO, Gareiss PC, Lerea J, Miller BL. "Strategies for recognition of stem-loop RNA structures by synthetic ligands: application to the HIV-1 frameshift stimulatory sequence." Journal of medicinal chemistry.. 2010 Aug 26; 53(16):6018-27.

Miller BL. "Dynamic covalent chemistry: Catalysing dynamic libraries." Nature chemistry.. 2010 Jun; 2(6):433-4. Epub 2010 May 16.

McNaughton BR, Gareiss PC, Jacobs SE, Fricke AF, Scott GA, Miller BL. "A potent activator of melanogenesis identified from small-molecule screening." ChemMedChem.. 2009 Oct; 4(10):1583-9.

Peng HI, Strohsahl CM, Leach KE, Krauss TD, Miller BL. "Label-free DNA detection on nanostructured Ag surfaces." ACS nano.. 2009 Aug 25; 3(8):2265-73.

Wender PA, Miller BL. "Synthesis at the molecular frontier." Nature.. 2009 Jul 9; 460(7252):197-201.

Gareiss PC, Miller BL. "Ribosomal frameshifting: an emerging drug target for HIV." Current opinion in investigational drugs.. 2009 Feb; 10(2):121-8.

Peng, H.-I.; Nuffer, Z. M.; Miller, B. L. "The role of alkanethiol spacers in a metal surface-based label-free DNA detection system". Proc. SPIE. 2009; 7167: 71670H.

Striemer, C. C.; Mace, C. R.; Carter, J. A.; Mehta, S. D.; Miller, B. L. "Arrayed Imaging Reflectometry for inexpensive and label-free protein arrays". Proc. SPIE. 2009; 7167: 71670G.

Mace, C. R.; Rose, R. C.; Miller, B. L. "Tracking serum antibody response to viral antigens with Arrayed Imaging Reflectometry". Proc. SPIE. 2009; 7167: 71670H.

Strohsahl, C. M.; Krauss, T. D.; Miller, B. L. "Detection of methicillin-resistant Staphylococcus aureus (MRSA) using the NanoLantern biosensor". Proc. SPIE. 2009; 7167: 71670S.

Peng, H-I; Nuffer, ZM; Miller, BL. "The role of alkanethiol spacers in a metal surface-based label-free DNA detection system." Proc. SPIE. 2009; 7167(71670H).

Miller BL. "Diagnostics for a personalized medical future: extending our senses to the molecular scale." Studies in health technology and informatics.. 2009 149:297-310.

Gareiss PC, Sobczak K, McNaughton BR, Palde PB, Thornton CA, Miller BL. "Dynamic combinatorial selection of molecules capable of inhibiting the (CUG) repeat RNA-MBNL1 interaction in vitro: discovery of lead compounds targeting myotonic dystrophy (DM1)." Journal of the American Chemical Society.. 2008 Dec 3; 130(48):16254-61.

Mace CR, Yadav AR, Miller BL. "Investigation of non-nucleophilic additives for the reduction of morphological anomalies in protein arrays." Langmuir : the ACS journal of surfaces and colloids.. 2008 Nov 18; 24(22):12754-7. Epub 2008 Oct 17.

Mace CR, Striemer CC, Miller BL. "Detection of human proteins using arrayed imaging reflectometry." Biosensors & bioelectronics.. 2008 Oct 15; 24(2):334-7. Epub 2008 May 27.

Palde PB, Gareiss PC, Miller BL. "Selective recognition of alkyl pyranosides in protic and aprotic solvents." Journal of the American Chemical Society.. 2008 Jul 23; 130(29):9566-73. Epub 2008 Jun 25.

McNaughton, B.R.; Miller, B. L. "One-pot quinoline synthesis." Organic Syntheses. 2008; 85: 27-33.

Ross NT, Miller BL. "Characterization of the binding surface of the translocated intimin receptor, an essential protein for EPEC and EHEC cell adhesion." Protein science : a publication of the Protein Society.. 2007 Dec; 16(12):2677-83.

Ross NT, Mace CR, Miller BL. "Biophysical analysis of the EPEC translocated intimin receptor-binding domain." Biochemical and biophysical research communications.. 2007 Nov 3; 362(4):1073-8. Epub 2007 Aug 30.

Strohsahl CM, Krauss TD, Miller BL. "Identification of high-stringency DNA hairpin probes by partial gene folding." Biosensors & bioelectronics.. 2007 Sep 30; 23(2):233-40. Epub 2007 Apr 19.

McNaughton BR, Gareiss PC, Miller BL. "Identification of a selective small-molecule ligand for HIV-1 frameshift-inducing stem-loop RNA from an 11,325 member resin bound dynamic combinatorial library." Journal of the American Chemical Society.. 2007 Sep 19; 129(37):11306-7. Epub 2007 Aug 28.

Ouyang H, Delouise LA, Miller BL, Fauchet PM. "Label-free quantitative detection of protein using macroporous silicon photonic bandgap biosensors." Analytical chemistry.. 2007 Feb 15; 79(4):1502-6. Epub 2007 Jan 23.

Gareiss, P. C.; Palde, P. B.; Hubbard, R. D.; Miller, B. L. "Conformational and Structural Analysis of a ter-Cyclopentane Scaffold for Molecular Recognition." Eur. J. Org. Chem. 2007; : 53-61.

Palde, P. B.; McNaughton, B. R.; Ross, N. T.; Gareiss, P. C.; Mace, C. R.; Spitale, R. C.; Miller, B. L. "Single step synthesis of functional organic receptors via a tridirectional Minisci reaction". Synthesis. 2007; : 2287-2290.

Striemer, C. C.; Mace, C. R.; Miller, B. L. "Rapid label-free protein detection arrays on coated silicon wafers". Mat. Res. Soc. Symp. Proc. 2007; 951E: 0951-E09-07.

Strohsahl CM, Miller BL, Krauss TD. "Preparation and use of metal surface-immobilized DNA hairpins for the detection of oligonucleotides." Nature protocols.. 2007 2(9):2105-10.

Bucholtz KM, Gareiss PC, Tajc SG, Miller BL. "Synthesis and evaluation of the first cis-cyclobutane-containing receptor for lipid A." Organic & biomolecular chemistry.. 2006 Nov 7; 4(21):3973-9. Epub 2006 Sep 29.

Mace CR, Striemer CC, Miller BL. "Theoretical and experimental analysis of arrayed imaging reflectometry as a sensitive proteomics technique." Analytical chemistry.. 2006 Aug 1; 78(15):5578-83.

McNaughton BR, Miller BL. "Resin-bound dynamic combinatorial chemistry." Organic letters.. 2006 Apr 27; 8(9):1803-6.

Tajc SG, Miller BL. "A designed receptor for pH-switchable ion binding in water." Journal of the American Chemical Society.. 2006 Mar 1; 128(8):2532-3.

Horner SR, Mace CR, Rothberg LJ, Miller BL. "A proteomic biosensor for enteropathogenic E. coli." Biosensors & bioelectronics.. 2006 Feb 15; 21(8):1659-63. Epub 2005 Sep 08.

Tolbert BS, Tajc SG, Webb H, Snyder J, Nielsen JE, Miller BL, Basavappa R. "The active site cysteine of ubiquitin-conjugating enzymes has a significantly elevated pKa: functional implications." Biochemistry.. 2005 Dec 20; 44(50):16385-91.

Strohsahl CM, Du H, Miller BL, Krauss TD. "Towards single-spot multianalyte molecular beacon biosensors." Talanta.. 2005 Sep 15; 67(3):479-85. Epub 2005 Aug 02.

Du H, Strohsahl CM, Camera J, Miller BL, Krauss TD. "Sensitivity and specificity of metal surface-immobilized "molecular beacon" biosensors." Journal of the American Chemical Society.. 2005 Jun 1; 127(21):7932-40.

DeLouise LA, Kou PM, Miller BL. "Cross-correlation of optical microcavity biosensor response with immobilized enzyme activity. Insights into biosensor sensitivity." Analytical chemistry.. 2005 May 15; 77(10):3222-30.

Delouise LA, Miller BL. "Enzyme immobilization in porous silicon: quantitative analysis of the kinetic parameters for glutathione-S-transferases." Analytical chemistry.. 2005 Apr 1; 77(7):1950-6.

McNaughton BR, Bucholtz KM, Camaaño-Moure A, Miller BL. "Self-selection in olefin cross-metathesis: the effect of remote functionality." Organic letters.. 2005 Feb 17; 7(4):733-6.

DeLouise, L. A.; Fauchet, P. M.; Miller, B. L.; Pentland, A. P. "Hydrogel-Supported Optical Microcavity Sensors." Advanced Materials. 2005; 17: 2199-2203.

Ouyang, H.; Christophersen, M.; Viard, R.; Miller, B. L.; Fauchet, P. M. "Macroporous Silicon Microcavities for Macromolecule Detection." Adv. Func. Mat. 2005; 15: 1851-1859.

Ouyang, H.; Lee, M.; Miller, B. L.; Fauchet, P. M. "Silicon Photonic Bandgap Biosensors." Proc. SPIE. 2005; 2018: 93-103.

Miller BL. "Interfacing biology and computing for health: the future of home diagnostics." Studies in health technology and informatics.. 2005 118:66-78.

DeLouise LA, Miller BL. "Quantatitive assessment of enzyme immobilization capacity in porous silicon." Analytical chemistry.. 2004 Dec 1; 76(23):6915-20.

Tajc SG, Tolbert BS, Basavappa R, Miller BL. "Direct determination of thiol pKa by isothermal titration microcalorimetry." Journal of the American Chemical Society.. 2004 Sep 1; 126(34):10508-9.

Lu J, Strohsahl CM, Miller BL, Rothberg LJ. "Reflective interferometric detection of label-free oligonucleotides." Analytical chemistry.. 2004 Aug 1; 76(15):4416-20.

DeLouise, L.; Miller, B. L. "Optimization of mesoporous silicon microcavities for proteomics sensing." Mat. Res. Soc. Symp. Proc. 2004; 782: A5.3.1-A.5.3.7.

DeLouise, L. A.; Miller, B. L. "Trends in porous silicon biomedical devices  tuning microstructure and performance trade-offs in optical biosensors." Proc. SPIE. 2004; 5357: 111-125.

Ouyang, H.; DeLouise, L. A.; Christophersen, M.; Miller, B. L.; Fauchet, P. M. "Biosensing with one-dimensional photonic bandgap structure." Proc. SPIE. 2004; 5511: 71-80.

McNaughton BR, Miller BL. "A mild and efficient one-step synthesis of quinolines." Organic letters.. 2003 Nov 13; 5(23):4257-9.

Du H, Disney MD, Miller BL, Krauss TD. "Hybridization-based unquenching of DNA hairpins on au surfaces: prototypical "molecular beacon" biosensors." Journal of the American Chemical Society.. 2003 Apr 9; 125(14):4012-3.

Hubbard, R. D.; Miller, B. L. "Regioselective and Diastereoselective Synthesis of Highly Substituted Cyclopentanes." Tetrahedron. 2003; 59: 8143.

Chan S, Horner SR, Fauchet PM, Miller BL. "Identification of Gram negative bacteria using nanoscale silicon microcavities." Journal of the American Chemical Society.. 2001 Nov 28; 123(47):11797-8.

Karan C, Miller BL. "RNA-selective coordination complexes identified via dynamic combinatorial chemistry." Journal of the American Chemical Society.. 2001 Aug 1; 123(30):7455-6.

Hubbard RD, Horner SR, Miller BL. "Highly substituted ter-cyclopentanes as receptors for lipid A." Journal of the American Chemical Society.. 2001 Jun 20; 123(24):5810-1.

Hari A, Karan C, Rodrigues WC, Miller BL. "Extending the scope of chromium-manganese redox-coupled reactions: a one-pot synthesis of benzoxazoles." The Journal of organic chemistry.. 2001 Feb 9; 66(3):991-6.

Chan, S.; Li, Y.; Rothberg, L. J.; Miller, B. L.; Fauchet, P. M. "Nanoscale Silicon Microcavities for Biosensing." Mat. Sci. & Eng. 2001; 15: 277-282.

Hari A, Miller BL. "Rapid and efficient synthesis of 2-amino-4H-benzothiazines" Organic letters.. 2000 Nov 16; 2(23):3667-70.

Hari A, Miller BL. "Segregation of separate steps in chromium-catalyzed reactions for convenience and mechanistic analysis" Organic letters.. 2000 Mar 9; 2(5):691-3.

Karan I, Miller BL. "Dynamic diversity in drug discovery: Putting small-molecule evolution to work." Drug discovery today.. 2000 Feb; 5(2):67-75.

Chan, S.; Fauchet, P. M.; Li, Y.; Rothberg, L. J.; Miller, B. L. "Porous Silicon Microcavities for Biosensing Applications" . Physica Status Solidi A. 2000; 182: 541-546.

Chan, S.; Horner, S. R.; Miller, B. L.; Fauchet, P. M. "Nanoscale Silicon Microcavity Optical Sensors for Biological Applications." Mat. Res. Soc. Symp. Proc. 2000; 638: F10.

Hari A, Miller BL. "Transfer Catalysis Between Two Solids: Application to the Reduction of Nitroarenes." Angewandte Chemie.. 1999 Sep; 38(18):2777-2779.

Klekota B, Miller BL. "Dynamic diversity and small-molecule evolution: a new paradigm for ligand identification." Trends in biotechnology.. 1999 May; 17(5):205-9.

Klekota, B.; Miller, B. L. "Selection of DNA-Binding Compounds via Multistage Molecular Evolution" . Tetrahedron (Combinatorial Chemistry Symposium in Print). 1999; 55: 11687.

Hari, A.; Miller, B. L. "A New Method for the Mild and Selective Reduction of Aryl Nitro Groups on Solid Support" . Tetrahedron Lett. 1999; 40: 245-248.

Hari, A.; Miller, B. L. "Exploiting Differences in Solution vs. Solid-Supported Reactivity for the Synthesis of Sulfonic Acid Derivatives." Org. Lett. 1999; 1: 2109-2111.

Hubbard, R. D.; Miller, B. L. "Lewis Acid Catalyzed Diels-Alder Reactions of Highly Hindered Dienophiles" . J. Org. Chem. 1998; 63: 4143.

Klekota, B.; Hammond, M. H.; Miller, B. L. "Generation of Novel DNA-Binding Compounds by Selection and Amplification from Self-Assembled Combinatorial Libraries" . Tetrahedron Lett. 1997; 38: 8639-8643.

Irie, K.; Yanai, Y.; Ohigashi, H.; Wender, P. A.; Miller, B. L. "Synthesis and Characterization of the Second Cysteine-Rich Region of Mouse Skin PKCn" . Bioorg. Med. Chem. Lett. 1996; 6: 353.

Irie, K.; Ishii, T.; Ohigashi, H.; Wender, P. A.; Miller, B. L.; Takeda, N. "Synthesis and Characterization of New Photolabile Phorbol Esters for Affinity Labeling of Protein Kinase C" . J. Org. Chem. 1996; 61: 2164.

Miller BL, Bonner WA. "Enantioselective autocatalysis. III. Configurational and conformational studies on a 1,4-benzodiazepinooxazole derivative." Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life.. 1995 Dec; 25(6):539-47.

Wender PA, Irie K, Miller BL. "Identification, activity, and structural studies of peptides incorporating the phorbol ester-binding domain of protein kinase C." Proceedings of the National Academy of Sciences of the United States of America.. 1995 Jan 3; 92(1):239-43.

Irie, K.; Koizumi, F.; Iwata, Y.; Ishii, T.; Yanai, Y.; Nakamura, Y.; Ohigashi, H.; Wender, P. A.; Miller, B. L. "Active Conformation of Tumor-Promoting (-)-Indolactam-V" . Tennen Yuki Kagobutsu Toronkai Koen Yoshishu. 1995; 37: 25-30.

Wender, P. A.; Irie, K.; Miller, B. L. "Synthesis and Binding of Photoaffinity Ligand Candidates for Protein Kinase C" . J Org Chem. 1993; 58: 4179.

Wender, P. A.; Kelly, R.; Beckham, S.; Miller, B. L. "Studies on DNA-cleaving agents: Computer modeling analysis of the mechanism of activation and cleavage of dynemicin-oligonucleotide complexes" . Proc. Natl. Acad. Sci. USA. 1991; 88: 8839.

Wender, P. A.; Miller, B. L. "Chiroptical Molecular Switch" . Chemtracts. 1991; 4: 358.

Paquette, L. A.; O'Doherty, G. A.; Miller, B. L.; Rogers, R. D.; Rheingold, A. L.; Geib, S. L. "Stereochemically Uniform Mode of Iron Carbonyl Complexation to Spirocyclic Isodicyclopentadienes" . Organometallics. 1989; 8: 2167.

Miller, B. L.; Hershberger, J. W. "Preparation of a Highly Functionalized Polystyrene-bound Tin Hydride" . J. Poly. Sci. Poly. Lett. 1987; 25: 219.

Books & Chapters

Chapter Title: Nanostructured Silicon Optical Sensors
Book Title: Optical Guided-wave Chemical and Biosensors II
Author List: Miller, B. L.
Edited By: Zourob, M.; Lakhtakia, A.
Published By: Springer-Verlag2010

Book Title: Dynamic Combinatorial Chemistry
Author List: Miller, B. L. (Ed.)
Published By: Wiley & Sons2009

Chapter Title: Porous and Planar Silicon Technologies for Biomolecular Sensing
Book Title: Principles of Bacterial Detection: Biosensors, Recognition...
Author List: Mace, C. R.; Miller, B. L.
Edited By: Zourob, M.; Elwary, S.; Turner, A.
Published By: Springer-Verlag2008 in Berlin, Germany

Chapter Title: Biodetection using Silicon Photonic Crystal Microcavities
Book Title: Biophotonics
Author List: Fauchet, P. M.; Miller, B. L.; DeLouise, L. A.; Lee, M. R.; Ouyang, H.
Edited By: Fauchet, P. M.; Pavesi, L.
Published By: Springer-Verlag2008

Chapter Title: Porous Silicon in Biosensing Applications
Book Title: Smart Biosensor Technology
Author List: Miller, B.L.
Edited By: Knopf, G. K.; Bassi, A. S.
Published By: CRC Press2007

Chapter Title: Combinatorial Chemistry in the Drug Discovery Process.
Book Title: Wiley Handbook of Drug Discovery
Author List: Ross, N. T.; McNaughton, B. R.; Miller, B. L.
Edited By: Gad, S.C.
Published By: Wiley2005 in New York

Chapter Title: Porous Silicon Microcavities for Biosensing Applications
Book Title: Encyclopedia of Nanotechnology
Author List: Miller, B. L.; Fauchet, P. M.; Horner, S. R.; Chan, S.
Edited By: Schwarz, J. A.; Contescu, C. I.; Putyera, K.
Published By: Marcel Dekker, Inc.2004 in New York

Chapter Title: Development of General Synthetic Strategies Towards Oligocycloalkanes.
Book Title: Strategies and Tactics in Organic Synthesis
Author List: Bucholtz, K. M.; Miller, B. L.
Edited By: Harmata, M.
Published By: Wiley2004

Chapter Title: Cloning as a Tool for Chemists
Book Title: Comprehensive Natural Products Chemistry
Author List: Pickert, J.D.; Miller, B.L.
Edited By: Kool, E.T.
Published By: Elsevier Press1998

Chapter Title: Toward the Ideal Synthesis: Connectivity Analysis and Multibond-Forming Processes
Book Title: Organic Synthesis: Theory and Applications
Author List: Wender, P. A.; Miller, B. L.
Edited By: Hudlicky
Published By: Elsevier Press1993