Recent Publications

• 1. Goodwin CM
  2. Ciesla JH
  3. Munger J
  Who's Driving? Human Cytomegalovirus, Interferon, and NFκB Signaling.; Viruses; Vol 10(9). 2018 Aug 21.
• 1. Zuber J
  2. Cabral BJ
  3. McFadyen I
  4. Mauger DM
  5. Mathews DH
  Analysis of RNA Nearest Neighbor Parameters Reveals Interdependencies and Quantifies the Uncertainty in RNA Secondary Structure Prediction.; RNA (New York, N.Y.). 2018 Aug 13.
• 1. Bellaousov S
  2. Kayedkhordeh M
  3. Peterson RJ
  4. Mathews DH
  Accelerated RNA Secondary Structure Design Using Pre-Selected Sequences for Helices and Loops.; RNA (New York, N.Y.). 2018 Aug 10.
• 1. Tambe A
  2. East-Seletsky A
  3. Knott GJ
  4. Doudna JA
  5. O'Connell MR
  RNA Binding and HEPN-Nuclease Activation Are Decoupled in CRISPR-Cas13a.; Cell reports; Vol 24(4). 2018 Jul 24.
• 1. Han L
  2. Phizicky EM
  A rationale for tRNA modification circuits in the anticodon loop.; RNA (New York, N.Y.). 2018 Jul 19.
• 1. Thompson JL
  2. Lai-Zhao Y
  3. Stathopulos PB
  4. Grossfield A
  5. Shuttleworth TJ
  Phosphorylation-mediated structural changes within the SOAR domain of stromal interaction molecule 1 enable specific activation of distinct Orai channels.; The Journal of biological chemistry; Vol 293(28). 2018 Jul 13.
• 1. Zimmerman SM
  2. Kon Y
  3. Hauke AC
  4. Ruiz BY
  5. Fields S
  6. Phizicky EM
  Conditional accumulation of toxic tRNAs to cause amino acid misincorporation.; Nucleic acids research. 2018 Jul 11.
• 1. Belashov IA
  2. Crawford DW
  3. Cavender CE
  4. Dai P
  5. Beardslee PC
  6. Mathews DH
  7. Pentelute BL
  8. McNaughton BR
  9. Wedekind JE
  Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs transcription.; Nucleic acids research. 2018 Jun 29.
• 1. Nadtochiy SM
  2. Wang YT
  3. Nehrke K
  4. Munger J
  5. Brookes PS
  Cardioprotection by nicotinamide mononucleotide (NMN): Involvement of glycolysis and acidic pH.; Journal of molecular and cellular cardiology. 2018 Jun 26.
• 1. O'Connell M
  Molecular Mechanisms of RNA-Targeting by Cas13-containing Type VI CRISPR-Cas Systems.; Journal of molecular biology. 2018 Jun 22.
• 1. Dutta D
  2. Belashov IA
  3. Wedekind JE
  Coupling GFP Expression with Chemical Modification to Probe Functionally Relevant Riboswitch Conformations in Live Bacteria.; Biochemistry. 2018 Jun 13.
• 1. De Zoysa MD
  2. Wu G
  3. Katz R
  4. Yu YT
  Guide-substrate base-pairing requirement for box H/ACA RNA-guided RNA pseudouridylation.; RNA (New York, N.Y.). 2018 Jun 05.
• 1. Zhang J
  2. Wang YT
  3. Miller JH
  4. Day MM
  5. Munger JC
  6. Brookes PS
  Accumulation of Succinate in Cardiac Ischemia Primarily Occurs via Canonical Krebs Cycle Activity.; Cell reports; Vol 23(9). 2018 May 29.
• 1. Salter JD
  2. Smith HC
  Modeling the Embrace of a Mutator: APOBEC Selection of Nucleic Acid Ligands.; Trends in biochemical sciences. 2018 May 23.
• 1. Bucukovski J
  2. Carter JA
  3. Striemer CC
  4. Müllner S
  5. Schulte-Pelkum J
  6. Schulz-Knappe P
  7. Miller BL
  Label-free microarray-based detection of autoantibodies in human serum.; Journal of immunological methods. 2018 May 23.
• 1. Chen W
  2. Anokhina V
  3. Dieudonne G
  4. Abramowitz MK
  5. Kashyap R
  6. Yan C
  7. Wu TT
  8. de Mesy Bentley KL
  9. Miller BL
  10. Bushinsky DA
  Patients with advanced chronic kidney disease and vascular calcification have a large hydrodynamic radius of secondary calciprotein particles.; Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2018 May 16.
• 1. Elbarbary R
  2. Maquat LE
  Evaluating the susceptibility of AGO2-loaded microRNAs to degradation by nucleases in vitro.; Methods (San Diego, Calif.). 2018 May 16.
• 1. Spasic A
  2. Berger KD
  3. Chen JL
  4. Seetin MG
  5. Turner DH
  6. Mathews DH
  Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.; Nucleic acids research. 2018 May 01.
• 1. Bottaro S
  2. Bussi G
  3. Kennedy SD
  4. Turner DH
  5. Lindorff-Larsen K
  Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations.; Science advances; Vol 4(5). 2018 May.
• 1. Yang F
  2. Zhang L
  3. Wakabayashi H
  4. Myers J
  5. Jiang Y
  6. Cao Y
  7. Jimenez-Ortigosa C
  8. Perlin DS
  9. Rustchenko E
  Correction for Yang et al., "Tolerance to Caspofungin in Candida albicans Is Associated with at Least Three Distinctive Mechanisms That Govern Expression ofFKSGenes and Cell Wall Remodeling".; Antimicrobial agents and chemotherapy; Vol 62(4). 2018 Apr.
• 1. Bennett RP
  2. Salter JD
  3. Smith HC
  A New Class of Antiretroviral Enabling Innate Immunity by Protecting APOBEC3 from HIV Vif-Dependent Degradation.; Trends in molecular medicine. 2018 Mar 30.
• 1. Han L
  2. Guy MP
  3. Kon Y
  4. Phizicky EM
  Lack of 2'-O-methylation in the tRNA anticodon loop of two phylogenetically distant yeast species activates the general amino acid control pathway.; PLoS genetics; Vol 14(3). 2018 Mar 29.
• 1. Berger KD
  2. Kennedy SD
  3. Schroeder SJ
  4. Znosko BM
  5. Sun H
  6. Mathews DH
  7. Turner DH
  Surprising Sequence Effects on GU Closure of Symmetric 2 × 2 Nucleotide RNA Internal Loops.; Biochemistry. 2018 Mar 23.
• 1. Coller J
  2. Grayhack EJ
  The analysis of translational mechanisms that modulate gene expression.; Methods (San Diego, Calif.); Vol 137. 2018 Mar 15.
• 1. Spasic A
  2. Kennedy SD
  3. Needham L
  4. Manoharan M
  5. Kierzek R
  6. Turner DH
  7. Mathews D
  Molecular Dynamics Correctly Models the Unusual Major Conformation of the GAGU RNA Internal Loop and with NMR Reveals an Unusual Minor Conformation.; RNA (New York, N.Y.). 2018 Feb 06.
• 1. Sur S
  2. Romo TD
  3. Grossfield A
  Selectivity and Mechanism of Fengycin, an Antimicrobial Lipopeptide from Molecular Dynamics.; The journal of physical chemistry. B. 2018 Jan 27.
• 1. Tucker C
  2. Bhattacharya S
  3. Wakabayashi H
  4. Bellaousov S
  5. Kravets A
  6. Welle SL
  7. Myers J
  8. Hayes JJ
  9. Bulger M
  10. Rustchenko E
  Transcriptional Regulation on Aneuploid Chromosomes in Divers Candida albicans Mutants.; Scientific reports; Vol 8(1). 2018 Jan 26.
• 1. Salas-Estrada LA
  2. Leioatts N
  3. Romo TD
  4. Grossfield A
  Lipids Alter Rhodopsin Function via Ligand-like and Solvent-like Interactions.; Biophysical journal; Vol 114(2). 2018 Jan 23.
• 1. Suwunnakorn S
  2. Wakabayashi H
  3. Kordalewska M
  4. Perlin DS
  5. Rustchenko E
  FKS2 and FKS3 genes of opportunistic human pathogen Candida albicans influence echinocandin susceptibility.; Antimicrobial agents and chemotherapy. 2018 Jan 22.
• 1. Lucas BA
  2. Lavi E
  3. Shiue L
  4. Cho H
  5. Katzman S
  6. Miyoshi K
  7. Siomi MC
  8. Carmel L
  9. Ares M
  10. Maquat LE
  Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay.; Proceedings of the National Academy of Sciences of the United States of America. 2018 Jan 16.
• 1. Thompson JL
  2. Zhao Y
  3. Stathopulos PB
  4. Grossfield A
  5. Shuttleworth TJ
  Phosphorylation-mediated structural changes within the SOAR domain of STIM1 enable specific activation of distinct Orai channels.; The Journal of biological chemistry. 2018 Jan 11.
• 1. Hardcastle T
  2. Novosjolova I
  3. Kotikam V
  4. Cheruiyot SK
  5. Mutisya D
  6. Kennedy SD
  7. Egli M
  8. Kelley ML
  9. Smith AVB
  10. Rozners E
  A Single Amide Linkage in the Passenger Strand Suppresses Its Activity and Enhances Guide Strand Targeting of siRNAs.; ACS chemical biology. 2018 Jan 03.
• 1. Zhao Y
  2. Dunker W
  3. Yu YT
  4. Karijolich J
  The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events.; Frontiers in bioengineering and biotechnology; Vol 6. 2018.
• 1. De Franco S
  2. O'Connell MR
  3. Vandevenne M
  Engineering RNA-Binding Proteins by Modular Assembly of RanBP2-Type Zinc Fingers.; Methods in molecular biology (Clifton, N.J.); Vol 1867. 2018.
• 1. Payea MJ
  2. Sloma MF
  3. Kon Y
  4. Young DL
  5. Guy MP
  6. Zhang X
  7. De Zoysa T
  8. Fields S
  9. Mathews DH
  10. Phizicky EM
  Widespread temperature sensitivity and tRNA decay due to mutations in a yeast tRNA.; RNA (New York, N.Y.). 2017 Dec 19.
• 1. Rambout X
  2. Dequiedt F
  3. Maquat LE
  Beyond Transcription: Roles of Transcription Factors in Pre-mRNA Splicing.; Chemical reviews. 2017 Dec 18.
• 1. Lai CW
  2. Ermolenko DN
  Ensemble and single-molecule FRET studies of protein synthesis.; Methods (San Diego, Calif.). 2017 Dec 13.
• 1. Spasic A
  2. Assmann SM
  3. Bevilacqua PC
  4. Mathews DH
  Modeling RNA secondary structure folding ensembles using SHAPE mapping data.; Nucleic acids research. 2017 Nov 21.
• 1. Gatchalian J
  2. Wang X
  3. Ikebe J
  4. Cox KL
  5. Tencer AH
  6. Zhang Y
  7. Burge NL
  8. Di L
  9. Gibson MD
  10. Musselman CA
  11. Poirier MG
  12. Kono H
  13. Hayes JJ
  14. Kutateladze TG
  Accessibility of the histone H3 tail in the nucleosome for binding of paired readers.; Nature communications; Vol 8(1). 2017 Nov 14.
• 1. Kielkopf CL
  Insights from structures of cancer-relevant pre-mRNA splicing factors.; Current opinion in genetics & development; Vol 48. 2017 Nov 09.
• 1. Wakabayashi H
  2. Tucker C
  3. Bethlendy G
  4. Kravets A
  5. Welle SL
  6. Bulger M
  7. Hayes JJ
  8. Rustchenko E
  Correction to: NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins.; Epigenetics & chromatin; Vol 10(1). 2017 Nov 07.
• 1. Popp MW
  2. Maquat LE
  Nonsense-mediated mRNA Decay and Cancer.; Current opinion in genetics & development; Vol 48. 2017 Nov 07.
• 1. Sloma MF
  2. Mathews DH
  Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.; PLoS computational biology; Vol 13(11). 2017 Nov 06.
• 1. Walling LR
  2. Butler JS
  Homologous VapC toxins inhibit translation and cell growth by sequence specific cleavage of tRNA(fMet).; Journal of bacteriology. 2017 Nov 06.
• 1. Ge J
  2. Karijolich J
  3. Zhai Y
  4. Zheng J
  5. Yu YT
  5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding.; Genes; Vol 8(11). 2017 Oct 31.
• 1. Wakabayashi H
  2. Tucker C
  3. Bethlendy G
  4. Kravets A
  5. Welle SL
  6. Bulger M
  7. Hayes J
  8. Rustchenko E
  NuA4 histone acetyltransferase activity is required for H4 acetylation on a dosage-compensated monosomic chromosome that confers resistance to fungal toxins.; Epigenetics & chromatin; Vol 10(1). 2017 Oct 23.
• 1. Tencer AH
  2. Cox KL
  3. Di L
  4. Bridgers JB
  5. Lyu J
  6. Wang X
  7. Sims JK
  8. Weaver TM
  9. Allen HF
  10. Zhang Y
  11. Gatchalian J
  12. Darcy MA
  13. Gibson MD
  14. Ikebe J
  15. Li W
  16. Wade PA
  17. Hayes JJ
  18. Strahl BD
  19. Kono H
  20. Poirier MG
  21. Musselman CA
  22. Kutateladze TG
  Covalent Modifications of Histone H3K9 Promote Binding of CHD3.; Cell reports; Vol 21(2). 2017 Oct 10.
• 1. Knott GJ
  2. East-Seletsky A
  3. Cofsky JC
  4. Holton JM
  5. Charles E
  6. O'Connell MR
  7. Doudna JA
  Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme.; Nature structural & molecular biology; Vol 24(10). 2017 Oct.
• 1. Murphy KJ
  2. Cutter AR
  3. Fang H
  4. Postnikov YV
  5. Bustin M
  6. Hayes JJ
  HMGN1 and 2 remodel core and linker histone tail domains within chromatin.; Nucleic acids research; Vol 45(17). 2017 Sep 29.
• 1. Tan Z
  2. Fu Y
  3. Sharma G
  4. Mathews DH
  TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs.; Nucleic acids research. 2017 Sep 28.
• 1. Glasser E
  2. Agrawal AA
  3. Jenkins JL
  4. Kielkopf CL
  Cancer-Associated Mutations Mapped on High-Resolution Structures of the U2AF2 RNA Recognition Motifs.; Biochemistry. 2017 Sep 01.
• 1. Smith LG
  2. Zhao J
  3. Mathews DH
  4. Turner DH
  Physics-based all-atom modeling of RNA energetics and structure.; Wiley interdisciplinary reviews. RNA; Vol 8(5). 2017 Sep.
• 1. Novosjolova I
  2. Kennedy SD
  3. Rozners E
  2-Methoxypyridine as Thymidine Mimic in Watson-Crick Base Pairs of DNA and PNA: Synthesis, Thermal Stability and NMR Structural Studies.; Chembiochem : a European journal of chemical biology. 2017 Aug 31.
• 1. Mutisya D
  2. Hardcastle T
  3. Cheruiyot SK
  4. Pallan PS
  5. Kennedy SD
  6. Egli M
  7. Kelley ML
  8. Smith AVB
  9. Rozners E
  Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.; Nucleic acids research; Vol 45(14). 2017 Aug 21.
• 1. Poole AR
  2. Vicino I
  3. Adachi H
  4. Yu YT
  5. Hebert MD
  Regulatory RNPs: a novel class of ribonucleoproteins that potentially contribute to ribosome heterogeneity.; Biology open. 2017 Aug 14.
• 1. Tan Z
  2. Sharma G
  3. Mathews DH
  Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.; Biophysical journal. 2017 Jul 20.
• 1. Elbarbary RA
  2. Miyoshi K
  3. Hedaya O
  4. Myers JR
  5. Maquat LE
  UPF1 helicase promotes TSN-mediated miRNA decay.; Genes & development; Vol 31(14). 2017 Jul 15.
• 1. Kauffmann AD
  2. Kennedy SD
  3. Zhao J
  4. Turner DH
  Nuclear Magnetic Resonance Structure of an 8 × 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.; Biochemistry. 2017 Jul 12.
• 1. Huang YS
  2. Delgadillo LF
  3. Cyr KH
  4. Kingsley PD
  5. An X
  6. McGrath KE
  7. Mohandas N
  8. Conboy JG
  9. Waugh RE
  10. Wan J
  11. Palis J
  Circulating primitive erythroblasts establish a functional, protein 4.1R-dependent cytoskeletal network prior to enucleating.; Scientific reports; Vol 7(1). 2017 Jul 12.
• 1. Romo TD
  2. Lewis AK
  3. Braun AR
  4. Grossfield A
  5. Sachs JN
  Minimal nucleation state of alpha-Synuclein is stabilized by dynamic threonine-water networks.; ACS chemical neuroscience. 2017 Jul 05.
• 1. Nadtochiy SM
  2. Wang YT
  3. Zhang J
  4. Nehrke K
  5. Schafer X
  6. Welle K
  7. Ghaemmaghami S
  8. Munger J
  9. Brookes PS
  Potential mechanisms linking SIRT activity and hypoxic 2-hydroxyglutarate generation: no role for direct enzyme (de)acetylation.; The Biochemical journal. 2017 Jul 03.
• 1. Ward M
  2. Datta A
  3. Wise M
  4. Mathews DH
  Advanced multi-loop algorithms for RNA secondary structure prediction reveal that the simplest model is best.; Nucleic acids research. 2017 Jun 06.
• 1. Elbarbary RA
  2. Maquat LE
  Distinct mechanisms obviate the potentially toxic effects of inverted-repeat Alu elements on cellular RNA metabolism.; Nature structural & molecular biology; Vol 24(6). 2017 Jun 06.
• 1. Bednar J
  2. Garcia-Saez I
  3. Boopathi R
  4. Cutter AR
  5. Papai G
  6. Reymer A
  7. Syed SH
  8. Lone IN
  9. Tonchev O
  10. Crucifix C
  11. Menoni H
  12. Papin C
  13. Skoufias DA
  14. Kurumizaka H
  15. Lavery R
  16. Hamiche A
  17. Hayes JJ
  18. Schultz P
  19. Angelov D
  20. Petosa C
  21. Dimitrov S
  Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.; Molecular cell; Vol 66(5). 2017 Jun 01.
• 1. Elbarbary RA
  2. Miyoshi K
  3. Myers JR
  4. Du P
  5. Ashton JM
  6. Tian B
  7. Maquat LE
  Tudor-SN-mediated endonucleolytic decay of human cell microRNAs promotes G1/S phase transition.; Science (New York, N.Y.); Vol 356(6340). 2017 May 26.
• 1. Polevoda B
  2. Joseph R
  3. Friedman AE
  4. Bennett RP
  5. Greiner R
  6. De Zoysa T
  7. Stewart RA
  8. Smith HC
  DNA mutagenic activity and capacity for HIV-1 restriction of the cytidine deaminase APOBEC3G depend on whether DNA or RNA binds to tyrosine 315.; The Journal of biological chemistry; Vol 292(21). 2017 May 26.
• 1. Yao P
  2. Wu J
  3. Lindner D
  4. Fox PL
  Interplay between miR-574-3p and hnRNP L regulates VEGFA mRNA translation and tumorigenesis.; Nucleic acids research. 2017 May 17.
• 1. Hilimire TA
  2. Chamberlain JM
  3. Anokhina V
  4. Bennett RP
  5. Swart O
  6. Myers JR
  7. Ashton JM
  8. Stewart RA
  9. Featherston AL
  10. Gates K
  11. Helms ED
  12. Smith HC
  13. Dewhurst S
  14. Miller BL
  HIV-1 Frameshift RNA-Targeted Triazoles Inhibit Propagation of Replication-Competent and Multi-Drug-Resistant HIV in Human Cells.; ACS chemical biology. 2017 May 05.
• 1. Bednar J
  2. Garcia-Saez I
  3. Boopathi R
  4. Cutter AR
  5. Papai G
  6. Reymer A
  7. Syed SH
  8. Lone IN
  9. Tonchev O
  10. Crucifix C
  11. Menoni H
  12. Papin C
  13. Skoufias DA
  14. Kurumizaka H
  15. Lavery R
  16. Hamiche A
  17. Hayes JJ
  18. Schultz P
  19. Angelov D
  20. Petosa C
  21. Dimitrov S
  Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.; Molecular cell; Vol 66(3). 2017 May 04.
• 1. East-Seletsky A
  2. O'Connell MR
  3. Burstein D
  4. Knott GJ
  5. Doudna JA
  RNA Targeting by Functionally Orthogonal Type VI-A CRISPR-Cas Enzymes.; Molecular cell; Vol 66(3). 2017 May 04.
• 1. Wedekind JE
  2. Dutta D
  3. Belashov IA
  4. Jenkins JL
  Metalloriboswitches: RNA-Based Inorganic Ion Sensors that Regulate Genes.; The Journal of biological chemistry. 2017 Apr 28.
• 1. Gamache ER
  2. Doh JH
  3. Ritz J
  4. Laederach A
  5. Bellaousov S
  6. Mathews DH
  7. Curcio MJ
  Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA.; Viruses; Vol 9(5). 2017 Apr 26.
• 1. Sun YH
  2. Xie LH
  3. Zhuo X
  4. Chen Q
  5. Ghoneim D
  6. Zhang B
  7. Jagne J
  8. Yang C
  9. Li XZ
  Domestic chickens activate a piRNA defense against avian leukosis virus.; eLife; Vol 6. 2017 Apr 06.
• 1. Vats K
  2. Marsh G
  3. Harding K
  4. Zampetakis I
  5. Waugh RE
  6. Benoit DS
  Nanoscale physicochemical properties of chain- and step-growth polymerized PEG hydrogels affect cell-material interactions.; Journal of biomedical materials research. Part A; Vol 105(4). 2017 Apr.
• 1. Cutter AR
  2. Hayes JJ
  Linker histones: novel insights into structure-specific recognition of the nucleosome.; Biochemistry and cell biology = Biochimie et biologie cellulaire; Vol 95(2). 2017 Apr.
• 1. Jenkins JL
  2. Kielkopf CL
  Splicing Factor Mutations in Myelodysplasias: Insights from Spliceosome Structures.; Trends in genetics : TIG. 2017 Mar 31.
• 1. Baker JE
  2. Sriram R
  3. Miller BL
  Recognition-mediated particle detection under microfluidic flow with waveguide-coupled 2D photonic crystals: towards integrated photonic virus detectors.; Lab on a chip. 2017 Mar 30.
• 1. Zuber J
  2. Sun H
  3. Zhang X
  4. McFadyen I
  5. Mathews DH
  A sensitivity analysis of RNA folding nearest neighbor parameters identifies a subset of free energy parameters with the greatest impact on RNA secondary structure prediction.; Nucleic acids research. 2017 Mar 15.
• 1. Brule CE
  2. Grayhack EJ
  Synonymous Codons: Choose Wisely for Expression.; Trends in genetics : TIG. 2017 Mar 11.
• 1. Murphy PS
  2. Wang J
  3. Bhagwat SP
  4. Munger JC
  5. Janssen WJ
  6. Wright TW
  7. Elliott MR
  CD73 regulates anti-inflammatory signaling between apoptotic cells and endotoxin-conditioned tissue macrophages.; Cell death and differentiation; Vol 24(3). 2017 Mar.
• 1. Yang F
  2. Zhang L
  3. Wakabayashi H
  4. Myers J
  5. Jiang Y
  6. Cao Y
  7. Jimenez-Ortigosa C
  8. Perlin DS
  9. Rustchenko E
  Tolerance to caspofungin in Candida albicans is associated with at least three distinctive mechanisms that govern expression of FKS genes and cell wall remodeling.; Antimicrobial agents and chemotherapy. 2017 Feb 21.
• 1. Aytenfisu AH
  2. Spasic A
  3. Grossfield A
  4. Stern HA
  5. Mathews DH
  Revised RNA Dihedral Parameters for the Amber Force Field Improve RNA Molecular Dynamics.; Journal of chemical theory and computation; Vol 13(2). 2017 Feb 14.
• 1. Clark KM
  2. Jenkins JL
  3. Fedoriw N
  4. Dumont ME
  Human CaaX protease ZMPSTE24 expressed in yeast: Structure and inhibition by HIV protease inhibitors.; Protein science : a publication of the Protein Society; Vol 26(2). 2017 Feb.
• 1. Balliano A
  2. Hao F
  3. Njeri C
  4. Balakrishnan L
  5. Hayes JJ
  HMGB1 Stimulates Activity of Polymerase β on Nucleosome Substrates.; Biochemistry. 2017 Jan 18.
• 1. Patra B
  2. Kon Y
  3. Yadav G
  4. Sevold AW
  5. Frumkin JP
  6. Vallabhajosyula RR
  7. Hintze A
  8. Østman B
  9. Schossau J
  10. Bhan A
  11. Marzolf B
  12. Tamashiro JK
  13. Kaur A
  14. Baliga NS
  15. Grayhack EJ
  16. Adami C
  17. Galas DJ
  18. Raval A
  19. Phizicky EM
  20. Ray A
  A genome wide dosage suppressor network reveals genomic robustness.; Nucleic acids research; Vol 45(1). 2017 Jan 09.
• 1. Hrabeta-Robinson E
  2. Marcus E
  3. Cozen AE
  4. Phizicky EM
  5. Lowe TM
  High-Throughput Small RNA Sequencing Enhanced by AlkB-Facilitated RNA de-Methylation (ARM-Seq).; Methods in molecular biology (Clifton, N.J.); Vol 1562. 2017.
• 1. De Zoysa MD
  2. Yu YT
  Posttranscriptional RNA Pseudouridylation.; The Enzymes; Vol 41. 2017.
• 1. Coudray N
  2. L Seyler S
  3. Lasala R
  4. Zhang Z
  5. Clark KM
  6. Dumont ME
  7. Rohou A
  8. Beckstein O
  9. Stokes DL
  Structure of the SLC4 transporter Bor1p in an inward-facing conformation.; Protein science : a publication of the Protein Society; Vol 26(1). 2017 Jan.
• 1. Han L
  2. Marcus E
  3. D'Silva S
  4. Phizicky EM
  S. cerevisiae Trm140 has two recognition modes for 3-methylcytidine modification of the anticodon loop of tRNA substrates.; RNA (New York, N.Y.). 2016 Dec 21.
• 1. Chatrikhi R
  2. Wang W
  3. Gupta A
  4. Loerch S
  5. Maucuer A
  6. Kielkopf CL
  SF1 Phosphorylation Enhances Specific Binding to U2AF(65) and Reduces Binding to 3'-Splice-Site RNA.; Biophysical journal; Vol 111(12). 2016 Dec 20.
• 1. Komisarof J
  2. McCall M
  3. Newman L
  4. Bshara W
  5. Mohler JL
  6. Morrison C
  7. Land H
  A four gene signature predictive of recurrent prostate cancer.; Oncotarget. 2016 Dec 09.
• 1. Ling C
  2. Ermolenko DN
  Caught on Camera: Intermediates of Ribosome Recycling.; Structure (London, England : 1993); Vol 24(12). 2016 Dec 06.
• 1. Loerch S
  2. Kielkopf CL
  Unmasking the U2AF homology motif family: a bona fide protein-protein interaction motif in disguise.; RNA (New York, N.Y.); Vol 22(12). 2016 Dec.
• 1. Suwunnakorn S
  2. Wakabayashi H
  3. Rustchenko E
  Chromosome 5 of Human Pathogen Candida albicans Carries Multiple Genes for Negative Control of Caspofungin and Anidulafungin Susceptibility.; Antimicrobial agents and chemotherapy; Vol 60(12). 2016 Dec.
• 1. Ikpeze TC
  2. Smith HC
  3. Lee DJ
  4. Elfar JC
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