Recent Publications

• 1. de Prisco N
  2. Ford C
  3. Elrod ND
  4. Lee W
  5. Tang LC
  6. Huang KL
  7. Lin A
  8. Ji P
  9. Jonnakuti VS
  10. Boyle L
  11. Cabaj M
  12. Botta S
  13. Õunap K
  14. Reinson K
  15. Wojcik MH
  16. Rosenfeld JA
  17. Bi W
  18. Tveten K
  19. Prescott T
  20. Gerstner T
  21. Schroeder A
  22. Fong CT
  23. George-Abraham JK
  24. Buchanan CA
  25. Hanson-Khan A
  26. Bernstein JA
  27. Nella AA
  28. Chung WK
  29. Brandt V
  30. Jovanovic M
  31. Targoff KL
  32. Yalamanchili HK
  33. Wagner EJ
  34. Gennarino VA
  Alternative polyadenylation alters protein dosage by switching between intronic and 3'UTR sites.; Science advances; Vol 9(7), pp. eade4814. 2023 Feb 17.
• 1. Bryan MR
  2. Butt JN
  3. Bucukovski J
  4. Miller BL
  Biosensing with Silicon Nitride Microring Resonators Integrated with an On-Chip Filter Bank Spectrometer.; ACS sensors. 2023 Feb 14.
• 1. Asantewaa G
  2. Tuttle ET
  3. Ward NP
  4. Kang YP
  5. Kim Y
  6. Kavanagh ME
  7. Girnius N
  8. Chen Y
  9. Duncan R
  10. Rodriguez K
  11. Hecht F
  12. Zocchi M
  13. Smorodintsev-Schiller L
  14. Scales TQ
  15. Taylor K
  16. Alimohammadi F
  17. Sechrist ZR
  18. Agostini-Vulaj D
  19. Schafer XL
  20. Chang H
  21. Smith Z
  22. O'Connor TN
  23. Whelan S
  24. Selfors LM
  25. Crowdis J
  26. Gray GK
  27. Bronson RT
  28. Brenner D
  29. Rufini A
  30. Dirksen RT
  31. Hezel AF
  32. Huber AR
  33. Munger J
  34. Cravatt BF
  35. Vasiliou V
  36. Cole CL
  37. DeNicola GM
  38. Harris IS
  Glutathione supports lipid abundance in vivo.; bioRxiv : the preprint server for biology. 2023 Feb 11.
• 1. Schroeder GM
  2. Akinyemi O
  3. Malik J
  4. Focht CM
  5. Pritchett EM
  6. Baker CD
  7. McSally JP
  8. Jenkins JL
  9. Mathews DH
  10. Wedekind JE
  A riboswitch separated from its ribosome-binding site still regulates translation.; Nucleic acids research. 2023 Feb 10.
• 1. Robinson EN
  2. Grossfield A
  Application of molecular dynamics to elucidate key binding interactions for the development of therapeutics against opioid overdose.; Biophysical journal; Vol 122(3S1), pp. 183a. 2023 Feb 10.
• 1. Klose AM
  2. Kosoy G
  3. Miller BL
  Arrayed Imaging Reflectometry monitoring of anti-viral antibody production throughout vaccination and breakthrough Covid-19.; PloS one; Vol 18(2), pp. e0277846. 2023 Feb 07.
• 1. Adachi H
  2. Pan Y
  3. He X
  4. Chen JL
  5. Klein B
  6. Platenburg G
  7. Morais P
  8. Boutz P
  9. Yu YT
  Targeted pseudouridylation: An approach for suppressing nonsense mutations in disease genes.; Molecular cell. 2023 Feb 03.
• 1. Poruthoor AJ
  2. Grossfield A
  Understanding the Free Energy Landscape of Phase Separation in Lipid Bilayers using Molecular Dynamics.; bioRxiv : the preprint server for biology. 2023 Feb 03.
• 1. Cui Y
  2. Arnold FJ
  3. Peng F
  4. Wang D
  5. Li JS
  6. Michels S
  7. Wagner EJ
  8. La Spada AR
  9. Li W
  Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders.; Nature communications; Vol 14(1), pp. 583. 2023 Feb 03.
• 1. Goodrum F
  2. Lowen A
  3. Lakdawala S
  4. Alwine J
  5. Casadevall A
  6. Imperiale M
  7. Atwood W
  8. Avgousti D
  9. Baines J
  10. Banfield B
  11. Banks L
  12. Bhaduri-McIntosh S
  13. Bhattacharya D
  14. Blanco-Melo D
  15. Bloom D
  16. Boon A
  17. Boulant S
  18. Brandt C
  19. Broadbent A
  20. Brooke C
  21. Cameron C
  22. Campos S
  23. Caposio P
  24. Chan G
  25. Cliffe A
  26. Coffin J
  27. Collins K
  28. Damania B
  29. Daugherty M
  30. Debbink K
  31. DeCaprio J
  32. Dermody T
  33. Dikeakos J
  34. DiMaio D
  35. Dinglasan R
  36. Duprex WP
  37. Dutch R
  38. Elde N
  39. Emerman M
  40. Enquist L
  41. Fane B
  42. Fernandez-Sesma A
  43. Flenniken M
  44. Frappier L
  45. Frieman M
  46. Frueh K
  47. Gack M
  48. Gaglia M
  49. Gallagher T
  50. Galloway D
  51. García-Sastre A
  52. Geballe A
  53. Glaunsinger B
  54. Goff S
  55. Greninger A
  56. Hancock M
  57. Harris E
  58. Heaton N
  59. Heise M
  60. Heldwein E
  61. Hogue B
  62. Horner S
  63. Hutchinson E
  64. Hyser J
  65. Jackson W
  66. Kalejta R
  67. Kamil J
  68. Karst S
  69. Kirchhoff F
  70. Knipe D
  71. Kowalik T
  72. Lagunoff M
  73. Laimins L
  74. Langlois R
  75. Lauring A
  76. Lee B
  77. Leib D
  78. Liu SL
  79. Longnecker R
  80. Lopez C
  81. Luftig M
  82. Lund J
  83. Manicassamy B
  84. McFadden G
  85. McIntosh M
  86. Mehle A
  87. Miller WA
  88. Mohr I
  89. Moody C
  90. Moorman N
  91. Moscona A
  92. Mounce B
  93. Munger J
  94. Münger K
  95. Murphy E
  96. Naghavi M
  97. Nelson J
  98. Neufeldt C
  99. Nikolich J
  100. O'Connor C
  101. Ono A
  102. Orenstein W
  103. Ornelles D
  104. Ou JH
  105. Parker J
  106. Parrish C
  107. Pekosz A
  108. Pellett P
  109. Pfeiffer J
  110. Plemper R
  111. Polyak S
  112. Purdy J
  113. Pyeon D
  114. Quinones-Mateu M
  115. Renne R
  116. Rice C
  117. Schoggins J
  118. Roller R
  119. Russell C
  120. Sandri-Goldin R
  121. Sapp M
  122. Schang L
  123. Schmid S
  124. Schultz-Cherry S
  125. Semler B
  126. Shenk T
  127. Silvestri G
  128. Simon V
  129. Smith G
  130. Smith J
  131. Spindler K
  132. Stanifer M
  133. Subbarao K
  134. Sundquist W
  135. Suthar M
  136. Sutton T
  137. Tai A
  138. Tarakanova V
  139. tenOever B
  140. Tibbetts S
  141. Tompkins S
  142. Toth Z
  143. van Doorslaer K
  144. Vignuzzi M
  145. Wallace N
  146. Walsh D
  147. Weekes M
  148. Weinberg J
  149. Weitzman M
  150. Weller S
  151. Whelan S
  152. White E
  153. Williams B
  154. Wobus C
  155. Wong S
  156. Yurochko A
  Virology under the Microscope-a Call for Rational Discourse.; mBio. 2023 Jan 26.
• 1. Jonnakuti VS
  2. Wagner EJ
  3. Maletić-Savatić M
  4. Liu Z
  5. Yalamanchili HK
  PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data.; bioRxiv : the preprint server for biology. 2023 Jan 24.
• 1. Rambout X
  2. Cho H
  3. Blanc R
  4. Lyu Q
  5. Miano JM
  6. Chakkalakal JV
  7. Nelson GM
  8. Yalamanchili HK
  9. Adelman K
  10. Maquat LE
  PGC-1α senses the CBC of pre-mRNA to dictate the fate of promoter-proximally paused RNAPII.; Molecular cell; Vol 83(2), pp. 186-202.e11. 2023 Jan 19.
• 1. Liu S
  2. Baeg GH
  3. Yang Y
  4. Goh FG
  5. Bao H
  6. Wagner EJ
  7. Yang X
  8. Cai Y
  The Integrator complex desensitizes cellular response to TGF-β/BMP signaling.; Cell reports; Vol 42(1), pp. 112007. 2023 Jan 14.
• 1. Kumar A
  2. Maurya P
  3. Hayes JJ
  Post-Translation Modifications and Mutations of Human Linker Histone Subtypes: Their Manifestation in Disease.; International journal of molecular sciences; Vol 24(2). 2023 Jan 11.
• 1. Wagner EJ
  2. Tong L
  3. Adelman K
  Integrator is a global promoter-proximal termination complex.; Molecular cell. 2023 Jan 04.
• 1. Cognetti JS
  2. Moen MT
  3. Brewer MG
  4. Bryan MR
  5. Tice JD
  6. McGrath JL
  7. Miller BL
  A photonic biosensor-integrated tissue chip platform for real-time sensing of lung epithelial inflammatory markers.; Lab on a chip. 2023 Jan 03.
• 1. Cavender CE
  2. Schroeder GM
  3. Mathews DH
  4. Wedekind JE
  Isothermal Titration Calorimetry Analysis of a Cooperative Riboswitch Using an Interdependent-Sites Binding Model.; Methods in molecular biology (Clifton, N.J.); Vol 2568, pp. 53-73. 2023.
• 1. Zhang H
  2. Zhang L
  3. Liu K
  4. Li S
  5. Mathews DH
  6. Huang L
  Linear-Time Algorithms for RNA Structure Prediction.; Methods in molecular biology (Clifton, N.J.); Vol 2586, pp. 15-34. 2023.
• 1. McMurray HR
  2. Stern HA
  3. Ambeskovic A
  4. Land H
  5. McCall MN
  Protocol to use TopNet for gene regulatory network modeling using gene expression data from perturbation experiments.; STAR protocols; Vol 3(4), pp. 101737. 2022 Sep 30.
• 1. Lin MH
  2. Jensen MK
  3. Elrod ND
  4. Huang KL
  5. Welle KA
  6. Wagner EJ
  7. Tong L
  Inositol hexakisphosphate is required for Integrator function.; Nature communications; Vol 13(1), pp. 5742. 2022 Sep 30.