Recent Publications

• 1. Zhao J
  2. Kennedy SD
  3. Berger KD
  4. Turner DH
  Nuclear Magnetic Resonance of Single-Stranded RNAs and DNAs of CAAU and UCAAUC as Benchmarks for Molecular Dynamics Simulations.; Journal of chemical theory and computation. 2020 Feb 17.
• 1. Marr L
  2. Clark DJ
  3. Hayes JJ
  A method for assessing histone surface accessibility genome-wide.; Methods (San Diego, Calif.). 2019 Dec 09.
• 1. Maji D
  2. Grossfield AM
  3. Kielkopf CL
  Structures of SF3b1 reveal a dynamic Achilles heel of spliceosome assembly: Implications for cancer-associated abnormalities and drug discovery.; Biochimica et biophysica acta. Gene regulatory mechanisms. 2019 Nov 07.
• 1. Bonn-Breach R
  2. Gu Y
  3. Jenkins J
  4. Fasan R
  5. Wedekind J
  Structure of Sonic Hedgehog protein in complex with zinc(II) and magnesium(II) reveals ion-coordination plasticity relevant to peptide drug design.; Acta crystallographica. Section D, Structural biology; Vol 75(Pt 11). 2019 Nov 01.
• 1. Kumpina I
  2. Brodyagin N
  3. MacKay JA
  4. Kennedy SD
  5. Katkevics M
  6. Rozners E
  Synthesis and RNA-Binding Properties of Extended Nucleobases for Triplex-Forming Peptide Nucleic Acids.; The Journal of organic chemistry; Vol 84(21). 2019 Nov 01.
• 1. Farrar CS
  2. Rouin GT
  3. Miller BL
  4. Raeman CH
  5. Mooney NA
  6. Hocking DC
  A Matricryptic Conformation of the Integrin-Binding Domain of Fibronectin Regulates Platelet-Derived Growth Factor-Induced Intracellular Calcium Release.; Cells; Vol 8(11). 2019 Oct 30.
• 1. Dutta D
  2. Wedekind JE
  Nucleobase mutants of a bacterial preQ1-II riboswitch that uncouple metabolite sensing from gene regulation.; The Journal of biological chemistry. 2019 Oct 28.
• 1. Payea MJ
  2. Hauke AC
  3. De Zoysa T
  4. Phizicky EM
  Mutations in the anticodon stem of tRNA cause accumulation and Met22-dependent decay of pre-tRNA in yeast.; RNA (New York, N.Y.). 2019 Oct 16.
• 1. Goodwin CM
  2. Schafer X
  3. Munger J
  UL26 attenuates IKKβ-mediated induction of ISG expression and enhanced protein ISGylation during HCMV infection.; Journal of virology. 2019 Sep 18.
• 1. Sparks RP
  2. Arango AS
  3. Starr ML
  4. Aboff ZL
  5. Hurst LR
  6. Rivera-Kohr DA
  7. Zhang C
  8. Harden KA
  9. Jenkins JL
  10. Guida WC
  11. Tajkhorshid E
  12. Fratti RA
  A small-molecule competitive inhibitor of phosphatidic acid binding by the AAA+ protein NSF/Sec18 blocks the SNARE-priming stage of vacuole fusion.; The Journal of biological chemistry. 2019 Sep 12.
• 1. Tuladhar R
  2. Yeu Y
  3. Tyler Piazza J
  4. Tan Z
  5. Rene Clemenceau J
  6. Wu X
  7. Barrett Q
  8. Herbert J
  9. Mathews DH
  10. Kim J
  11. Hyun Hwang T
  12. Lum L
  CRISPR-Cas9-based mutagenesis frequently provokes on-target mRNA misregulation.; Nature communications; Vol 10(1). 2019 Sep 06.
• 1. Brewer MG
  2. Anderson EA
  3. Pandya RP
  4. De Benedetto A
  5. Yoshida T
  6. Hilimire TA
  7. Martinez-Sobrido L
  8. Beck LA
  9. Miller BL
  Peptides Derived from the Tight Junction Protein, Claudin-1, Disrupt Skin Barrier and Promote Responsiveness to an Epicutaneous Vaccine.; The Journal of investigative dermatology. 2019 Aug 02.
• 1. Meade N
  2. King M
  3. Munger J
  4. Walsh D
  mTOR Dysregulation by Vaccinia Virus F17 Controls Multiple Processes with Varying Roles in Infection.; Journal of virology; Vol 93(15). 2019 Aug 01.
• 1. Huang L
  2. Zhang H
  3. Deng D
  4. Zhao K
  5. Liu K
  6. Hendrix DA
  7. Mathews DH
  LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search.; Bioinformatics (Oxford, England); Vol 35(14). 2019 Jul 15.
• 1. Tucker C
  2. Bhattacharya S
  3. Wakabayashi H
  4. Bellaousov S
  5. Kravets A
  6. Welle SL
  7. Myers J
  8. Hayes JJ
  9. Bulger M
  10. Rustchenko E
  Author Correction: Transcriptional Regulation on Aneuploid Chromosomes in Diverse Candida albicans Mutants.; Scientific reports; Vol 9(1). 2019 Jul 05.
• 1. Ramos J
  2. Han L
  3. Li Y
  4. Hagelskamp F
  5. Kellner SM
  6. Alkuraya FS
  7. Phizicky EM
  8. Fu D
  Formation of tRNA wobble inosine in humans is disrupted by a millennia-old mutation causing intellectual disability.; Molecular and cellular biology. 2019 Jul 01.
• 1. Zhang H
  2. Miller BL
  Immunosensor-based label-free and multiplex detection of influenza viruses: State of the art.; Biosensors & bioelectronics; Vol 141. 2019 Jun 25.
• 1. Kurosaki T
  2. Popp MW
  3. Maquat LE
  Publisher Correction: Quality and quantity control of gene expression by nonsense-mediated mRNA decay.; Nature reviews. Molecular cell biology; Vol 20(6). 2019 Jun.
• 1. Mathews DH
  How to benchmark RNA secondary structure prediction accuracy.; Methods (San Diego, Calif.); Vol 162-163. 2019 Jun 01.
• 1. Zuber J
  2. Mathews DH
  Estimating uncertainty in predicted folding free energy changes of RNA secondary structures.; RNA (New York, N.Y.); Vol 25(6). 2019 Jun.