Recent Publications

• 1. Kayedkhordeh M
  2. Yamagami R
  3. Bevilacqua PC
  4. Mathews DH
  Inverse RNA Folding Workflow to Design and Test Ribozymes that Include Pseudoknots.; Methods in molecular biology (Clifton, N.J.); Vol 2167. 2021.
• 1. Chavali SS
  2. Cavender CE
  3. Mathews DH
  4. Wedekind JE
  Arginine Forks Are a Widespread Motif to Recognize Phosphate Backbones and Guanine Nucleobases in the RNA Major Groove.; Journal of the American Chemical Society. 2020 Nov 10.
• 1. Sparks RP
  2. Arango AS
  3. Jenkins JL
  4. Guida WC
  5. Tajkhorshid E
  6. Sparks CE
  7. Sparks JD
  8. Fratti RA
  An Allosteric Binding Site on Sortilin Regulates the Trafficking of VLDL, PCSK9, and LDLR in Hepatocytes.; Biochemistry. 2020 Nov 05.
• 1. Hao F
  2. Murphy KJ
  3. Kujirai T
  4. Kamo N
  5. Kato J
  6. Koyama M
  7. Okamato A
  8. Hayashi G
  9. Kurumizaka H
  10. Hayes JJ
  Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain.; Nucleic acids research. 2020 Oct 30.
• 1. Romo TD
  2. Grossfield A
  3. Markelz AG
  Persistent Protein Motions in a Rugged Energy Landscape Revealed by Normal Mode Ensemble Analysis.; Journal of chemical information and modeling. 2020 Oct 26.
• 1. Chavali SS
  2. Mali SM
  3. Jenkins JL
  4. Fasan R
  5. Wedekind JE
  Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors.; The Journal of biological chemistry. 2020 Oct 13.
• 1. Klose AM
  2. Miller BL
  A Stable Biotin-Streptavidin Surface Enables Multiplex, Label-Free Protein Detection by Aptamer and Aptamer-Protein Arrays Using Arrayed Imaging Reflectometry.; Sensors (Basel, Switzerland); Vol 20(20). 2020 Oct 10.
• 1. Maji D
  2. Glasser E
  3. Henderson S
  4. Galardi J
  5. Pulvino MJ
  6. Jenkins JL
  7. Kielkopf CL
  Representative cancer-associated U2AF2 mutations alter RNA interactions and splicing.; The Journal of biological chemistry. 2020 Oct 05.
• 1. Rambout X
  2. Maquat LE
  NCBP3: A Multifaceted Adaptive Regulator of Gene Expression.; Trends in biochemical sciences. 2020 Oct 05.
• 1. Steiner DJ
  2. Cognetti JS
  3. Luta EP
  4. Klose AM
  5. Bucukovski J
  6. Bryan MR
  7. Schmuke JJ
  8. Nguyen-Contant P
  9. Sangster MY
  10. Topham DJ
  11. Miller BL
  Array-based analysis of SARS-CoV-2, other coronaviruses, and influenza antibodies in convalescent COVID-19 patients.; Biosensors & bioelectronics; Vol 169. 2020 Sep 21.
• 1. Rambout X
  2. Maquat LE
  The nuclear cap-binding complex as choreographer of gene transcription and pre-mRNA processing.; Genes & development; Vol 34(17-18). 2020 Sep 01.
• 1. De Zoysa T
  2. Phizicky EM
  Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences.; PLoS genetics; Vol 16(8). 2020 Aug 25.
• 1. Piekna-Przybylska D
  2. Bambara RA
  3. Maggirwar SB
  4. Dewhurst S
  G-quadruplex ligands targeting telomeres do not inhibit HIV promoter activity and cooperate with latency reversing agents in killing latently infected cells.; Cell cycle (Georgetown, Tex.). 2020 Aug 17.
• 1. Zheng D
  2. Cho H
  3. Wang W
  4. Rambout X
  5. Tian B
  6. Maquat LE
  3'READS+RIP defines differential Staufen1 binding to alternative 3'UTR isoforms and reveals structures and sequence motifs influencing binding and polysome association.; RNA (New York, N.Y.). 2020 Aug 12.
• 1. Chen W
  2. Fitzpatrick J
  3. Monroy-Trujillo JM
  4. Sozio SM
  5. Jaar BG
  6. Estrella MM
  7. Serrano J
  8. Anokhina V
  9. Miller BL
  10. Melamed ML
  11. Bushinsky DA
  12. Parekh RS
  Associations of Serum Calciprotein Particle Size and Transformation Time with Arterial Calcification, Arterial Stiffness, and Mortality in Incident Hemodialysis Patients.; American journal of kidney diseases : the official journal of the National Kidney Foundation. 2020 Aug 12.
• 1. Popp MW
  2. Cho H
  3. Maquat LE
  Viral subversion of nonsense-mediated mRNA decay.; RNA (New York, N.Y.). 2020 Jul 22.
• 1. Wu J
  2. Subbaiah KCV
  3. Xie LH
  4. Jiang F
  5. Khor ES
  6. Mickelsen DM
  7. Myers JR
  8. Tang WW
  9. Yao P
  Glutamyl-Prolyl-tRNA Synthetase Regulates Proline-Rich Pro-fibrotic Protein Synthesis During Cardiac Fibrosis.; Circulation research. 2020 Jul 01.
• 1. Zhang H
  2. Zhang L
  3. Mathews DH
  4. Huang L
  LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities.; Bioinformatics (Oxford, England); Vol 36(Supplement_1). 2020 Jul 01.
• 1. Schroeder GM
  2. Dutta D
  3. Cavender CE
  4. Jenkins JL
  5. Pritchett EM
  6. Baker CD
  7. Ashton JM
  8. Mathews DH
  9. Wedekind JE
  Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.; Nucleic acids research. 2020 Jun 29.
• 1. Ermolenko DN
  2. Mathews DH
  Making ends meet: New functions of mRNA secondary structure.; Wiley interdisciplinary reviews. RNA. 2020 Jun 29.