URMC / Biochemistry & Biophysics / Research / Recent Publications Recent Publications Zhu MMathews DH Sequence Design Using RNAstructure.; Methods in molecular biology (Clifton, N.J.); Vol 2847, pp. 17-31. 2025. Kiliushik DGoenner CLaw MSchroeder GMSrivastava YJenkins JLWedekind JE Knotty is nice: metabolite binding and RNA-mediated gene regulation by the preQ1 riboswitch family.; The Journal of biological chemistry. 2024 Oct 30. Courtney EDatta AMathews DHWard M memerna: Sparse RNA Folding Including Coaxial Stacking.; Journal of molecular biology. 2024 Oct 18. Srivastava YAkinyemi ORohe TCPritchett EMBaker CDSharma AJenkins JLMathews DHWedekind JE Two riboswitch classes that share a common ligand-binding fold show major differences in the ability to accommodate mutations.; Nucleic acids research. 2024 Oct 16. Zhu MZuber JTan ZSharma GMathews DH DecoyFinder: Identification of Contaminants in Sets of Homologous RNA Sequences.; bioRxiv : the preprint server for biology. 2024 Oct 15. Poruthoor AJStallone JJMiaro MSharma AGrossfield A System size effects on the free energy landscapes from molecular dynamics of phase-separating bilayers.; The Journal of chemical physics; Vol 161(14). 2024 Oct 14. Hecht FZocchi MTuttle ETWard NPSmith BKang YPCazarin JSoares ZGOzgurses MEZhao HSheehan CAlimohammadi FMunger LDTrivedi DAsantewaa GBlick-Nitko SKZoeller JJChen YVasiliou VTurner BMMuir AColoff JLMunger JDeNicola GMHarris IS Catabolism of extracellular glutathione supplies amino acids to support tumor growth.; bioRxiv : the preprint server for biology. 2024 Oct 11. Maji DJenkins JLBoutz PLKielkopf CL Recurrent Neurodevelopmentally Associated Variants of the Pre-mRNA Splicing Factor U2AF2 Alter RNA Binding Affinities and Interactions.; Biochemistry. 2024 Oct 10. Scales TQSmith BBlanchard LMWixom NTuttle ETAltman BJPeppone LJMunger JCampbell TMCampbell EKHarris IS A whole food, plant-based diet reduces amino acid levels in patients with metastatic breast cancer.; medRxiv : the preprint server for health sciences. 2024 Oct 09. Beard JWHunt SLEvans AGoenner CMiller BL Mimicking a Cellular Crowding Environment for Enzyme-Free Paper-Based Nucleic Acid Tests at the Point of Care.; ACS sensors. 2024 Sep 30. Oberstrass LTants JNLichtenthaeler CAli SEKoch LMathews DHSchlundt AWeigand J Comprehensive Profiling of Roquin Binding Preferences for RNA Stem-Loops.; Angewandte Chemie (International ed. in English). 2024 Sep 30. Cosler LEMidence LHayes JJGondeck JTMoy KChen MHHogan JD The Influence of State Restrictions on Opioid Prescribing: 2006-2018.; Journal of public health management and practice : JPHMP. 2024 Sep 24. Ambeskovic AMcCall MNWoodsmith JJuhl HLand H Exon Skipping-based Subtyping of Colorectal Cancers.; Gastroenterology. 2024 Aug 22. Soto CALesch MLBecker JLSharipol AKhan ASchafer XLBecker MWMunger JCFrisch BJ The Lactate Receptor GPR81 is a Mechanism of Leukemia-Associated Macrophage Polarization in the Bone Marrow Microenvironment.; bioRxiv : the preprint server for biology. 2024 Aug 16. Blick-Nitko SKTure SKSchafer XLMunger JCLivada ACLi CMaurya PRondina MTMorrell CN Platelet Ido1 expression is induced during Plasmodium yoelii infection, altering plasma tryptophan metabolites.; Blood advances. 2024 Aug 12. Casadio RMathews DHSternberg MJE Computational Resources for Molecular Biology 2024.; Journal of molecular biology. 2024 Aug 06. Thalalla Gamage SKhoogar RHowpay Manage SCrawford MCGeorgeson JPolevoda BVSanders CLee KANance KDIyer VKustanovich APerez MThu CTNance SRAmin RMiller CNHolewinski RJMeyer TKoparde VYang AJailwala PNguyen JTAndresson THunter KGu SMock BAEdmondson EFDifilippantonio SChari RSchwartz SO'Connell MRWu CCMeier JL Transfer RNA acetylation regulates in vivo mammalian stress signaling.; bioRxiv : the preprint server for biology. 2024 Jul 28. Asantewaa GTuttle ETWard NPKang YPKim YKavanagh MEGirnius NChen YRodriguez KHecht FZocchi MSmorodintsev-Schiller LScales TQTaylor KAlimohammadi FDuncan RPSechrist ZRAgostini-Vulaj DSchafer XLChang HSmith ZRO'Connor TNWhelan SSelfors LMCrowdis JGray GKBronson RTBrenner DRufini ADirksen RTHezel AFHuber ARMunger JCravatt BFVasiliou VCole CLDeNicola GMHarris IS Glutathione synthesis in the mouse liver supports lipid abundance through NRF2 repression.; Nature communications; Vol 15(1), pp. 6152. 2024 Jul 21. Lin MHJensen MKElrod NDChu HFHaseley MBeam ACHuang KLChiang WRussell WKWilliams KPröschel CWagner EJTong L Cytoplasmic binding partners of the Integrator endonuclease INTS11 and its paralog CPSF73 are required for their nuclear function.; Molecular cell. 2024 Jul 08. Malik AZhang LGautam MDai NLi SZhang HMathews DHHuang L LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments.; Journal of molecular biology. 2024 Jul 04.