URMC / Biochemistry & Biophysics / Research / Recent Publications Recent Publications de Prisco NFord CElrod NDLee WTang LCHuang KLLin AJi PJonnakuti VSBoyle LCabaj MBotta SÕunap KReinson KWojcik MHRosenfeld JABi WTveten KPrescott TGerstner TSchroeder AFong CTGeorge-Abraham JKBuchanan CAHanson-Khan ABernstein JANella AAChung WKBrandt VJovanovic MTargoff KLYalamanchili HKWagner EJGennarino VA Alternative polyadenylation alters protein dosage by switching between intronic and 3'UTR sites.; Science advances; Vol 9(7), pp. eade4814. 2023 Feb 17. Bryan MRButt JNBucukovski JMiller BL Biosensing with Silicon Nitride Microring Resonators Integrated with an On-Chip Filter Bank Spectrometer.; ACS sensors. 2023 Feb 14. Asantewaa GTuttle ETWard NPKang YPKim YKavanagh MEGirnius NChen YDuncan RRodriguez KHecht FZocchi MSmorodintsev-Schiller LScales TQTaylor KAlimohammadi FSechrist ZRAgostini-Vulaj DSchafer XLChang HSmith ZO'Connor TNWhelan SSelfors LMCrowdis JGray GKBronson RTBrenner DRufini ADirksen RTHezel AFHuber ARMunger JCravatt BFVasiliou VCole CLDeNicola GMHarris IS Glutathione supports lipid abundance in vivo.; bioRxiv : the preprint server for biology. 2023 Feb 11. Schroeder GMAkinyemi OMalik JFocht CMPritchett EMBaker CDMcSally JPJenkins JLMathews DHWedekind JE A riboswitch separated from its ribosome-binding site still regulates translation.; Nucleic acids research. 2023 Feb 10. Robinson ENGrossfield A Application of molecular dynamics to elucidate key binding interactions for the development of therapeutics against opioid overdose.; Biophysical journal; Vol 122(3S1), pp. 183a. 2023 Feb 10. Klose AMKosoy GMiller BL Arrayed Imaging Reflectometry monitoring of anti-viral antibody production throughout vaccination and breakthrough Covid-19.; PloS one; Vol 18(2), pp. e0277846. 2023 Feb 07. Adachi HPan YHe XChen JLKlein BPlatenburg GMorais PBoutz PYu YT Targeted pseudouridylation: An approach for suppressing nonsense mutations in disease genes.; Molecular cell. 2023 Feb 03. Poruthoor AJGrossfield A Understanding the Free Energy Landscape of Phase Separation in Lipid Bilayers using Molecular Dynamics.; bioRxiv : the preprint server for biology. 2023 Feb 03. Cui YArnold FJPeng FWang DLi JSMichels SWagner EJLa Spada ARLi W Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders.; Nature communications; Vol 14(1), pp. 583. 2023 Feb 03. Goodrum FLowen ALakdawala SAlwine JCasadevall AImperiale MAtwood WAvgousti DBaines JBanfield BBanks LBhaduri-McIntosh SBhattacharya DBlanco-Melo DBloom DBoon ABoulant SBrandt CBroadbent ABrooke CCameron CCampos SCaposio PChan GCliffe ACoffin JCollins KDamania BDaugherty MDebbink KDeCaprio JDermody TDikeakos JDiMaio DDinglasan RDuprex WPDutch RElde NEmerman MEnquist LFane BFernandez-Sesma AFlenniken MFrappier LFrieman MFrueh KGack MGaglia MGallagher TGalloway DGarcía-Sastre AGeballe AGlaunsinger BGoff SGreninger AHancock MHarris EHeaton NHeise MHeldwein EHogue BHorner SHutchinson EHyser JJackson WKalejta RKamil JKarst SKirchhoff FKnipe DKowalik TLagunoff MLaimins LLanglois RLauring ALee BLeib DLiu SLLongnecker RLopez CLuftig MLund JManicassamy BMcFadden GMcIntosh MMehle AMiller WAMohr IMoody CMoorman NMoscona AMounce BMunger JMünger KMurphy ENaghavi MNelson JNeufeldt CNikolich JO'Connor COno AOrenstein WOrnelles DOu JHParker JParrish CPekosz APellett PPfeiffer JPlemper RPolyak SPurdy JPyeon DQuinones-Mateu MRenne RRice CSchoggins JRoller RRussell CSandri-Goldin RSapp MSchang LSchmid SSchultz-Cherry SSemler BShenk TSilvestri GSimon VSmith GSmith JSpindler KStanifer MSubbarao KSundquist WSuthar MSutton TTai ATarakanova VtenOever BTibbetts STompkins SToth Zvan Doorslaer KVignuzzi MWallace NWalsh DWeekes MWeinberg JWeitzman MWeller SWhelan SWhite EWilliams BWobus CWong SYurochko A Virology under the Microscope-a Call for Rational Discourse.; mBio. 2023 Jan 26. Jonnakuti VSWagner EJMaletić-Savatić MLiu ZYalamanchili HK PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data.; bioRxiv : the preprint server for biology. 2023 Jan 24. Rambout XCho HBlanc RLyu QMiano JMChakkalakal JVNelson GMYalamanchili HKAdelman KMaquat LE PGC-1α senses the CBC of pre-mRNA to dictate the fate of promoter-proximally paused RNAPII.; Molecular cell; Vol 83(2), pp. 186-202.e11. 2023 Jan 19. Liu SBaeg GHYang YGoh FGBao HWagner EJYang XCai Y The Integrator complex desensitizes cellular response to TGF-β/BMP signaling.; Cell reports; Vol 42(1), pp. 112007. 2023 Jan 14. Kumar AMaurya PHayes JJ Post-Translation Modifications and Mutations of Human Linker Histone Subtypes: Their Manifestation in Disease.; International journal of molecular sciences; Vol 24(2). 2023 Jan 11. Wagner EJTong LAdelman K Integrator is a global promoter-proximal termination complex.; Molecular cell. 2023 Jan 04. Cognetti JSMoen MTBrewer MGBryan MRTice JDMcGrath JLMiller BL A photonic biosensor-integrated tissue chip platform for real-time sensing of lung epithelial inflammatory markers.; Lab on a chip. 2023 Jan 03. Cavender CESchroeder GMMathews DHWedekind JE Isothermal Titration Calorimetry Analysis of a Cooperative Riboswitch Using an Interdependent-Sites Binding Model.; Methods in molecular biology (Clifton, N.J.); Vol 2568, pp. 53-73. 2023. Zhang HZhang LLiu KLi SMathews DHHuang L Linear-Time Algorithms for RNA Structure Prediction.; Methods in molecular biology (Clifton, N.J.); Vol 2586, pp. 15-34. 2023. McMurray HRStern HAAmbeskovic ALand HMcCall MN Protocol to use TopNet for gene regulatory network modeling using gene expression data from perturbation experiments.; STAR protocols; Vol 3(4), pp. 101737. 2022 Sep 30. Lin MHJensen MKElrod NDHuang KLWelle KAWagner EJTong L Inositol hexakisphosphate is required for Integrator function.; Nature communications; Vol 13(1), pp. 5742. 2022 Sep 30.