URochester Medicine / Labs / Choe Lab / Publications

Recent Publications

1. Kasturi A
2. Proctor AR
3. Vosoughi A
4. Zhang CT
5. Hadjiyski N
6. Palka SV
7. Davis JG
8. Cardamone LM
9. Helmy S
10. Cardona J
11. Johnson TW
12. Gu Y
13. Marinescu MA
14. Selioutski O
15. Choe R
16. Khan IR
17. Wismüller A
Multimodal contrastive prognostication framework for early neurological outcome prediction in post-cardiac arrest patients.; Scientific reports. 2026 Mar 31.
1. March A
2. Castillo Aguirre SH
3. Eliseev R
4. Choe R
5. Benoit DSW
Long-term tissue engineered periosteum-mediated allograft healing is hindered due to persistent fibrosis and limited allograft remodeling.; Bone reports; Vol 26, pp. 101865. 2025 Aug 06.
1. March A
2. Wu H
3. Choe R
4. Benoit DSW
Optimizing Tissue-Engineered Periosteum Biochemical Cues to Hasten Bone Allograft Healing.; Journal of biomedical materials research. Part A; Vol 113(3), pp. e37890. 2025 Mar.
1. March A
2. Hebner TS
3. Choe R
4. Benoit DSW
Leveraging the predictive power of a 3D in vitro vascularization screening assay for hydrogel-based tissue-engineered periosteum allograft healing.; Biomaterials advances; Vol 169, pp. 214187. 2025 Jan 15.
1. Dar IA
2. Khan IR
3. Johnson TW
4. Helmy SM
5. Cardona JI
6. Escobar S
7. Selioutski O
8. Marinescu MA
9. Zhang CT
10. Proctor AR
11. AbdAllah N
12. Busch DR
13. Maddox RK
14. Choe R
Wavelet and time-based cerebral autoregulation analysis using diffuse correlation spectroscopy on adults undergoing extracorporeal membrane oxygenation therapy.; PloS one; Vol 19(10), pp. e0299752. 2024 Oct 29.
1. Majeski JB
2. Ching-Roa VD
3. Giacomelli MG
4. Choe R
Design for a low-cost heterodyne frequency domain-diffuse optical spectroscopy system.; Biomedical optics express; Vol 14(6), pp. 2873-2888. 2023 May 24.
1. Khan IR
2. Dar IA
3. Johnson TW
4. Loose E
5. Xu YY
6. Santiago E
7. Donohue KL
8. Marinescu MA
9. Gosev I
10. Schifitto G
11. Maddox RK
12. Busch DR
13. Choe R
14. Selioutski O
Correlations Between Quantitative EEG Parameters and Cortical Blood Flow in Patients Undergoing Extracorporeal Membrane Oxygenation With and Without Encephalopathy.; Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society. 2023 Jan 30.
1. Tabet M
2. Custer C
3. Khan IR
4. Sanford E
5. Sharma J
6. Choe R
7. Singh S
8. Sirsi D
9. Olson DM
10. Morriss MC
11. Raman L
12. Busch DR
Neuromonitoring of Pediatric and Adult Extracorporeal Membrane Oxygenation Patients: The Importance of Continuous Bedside Tools in Driving Neuroprotective Clinical Care.; ASAIO journal (American Society for Artificial Internal Organs : 1992). 2023 Jan 06.
1. Majeski JB
2. Dar IA
3. Choe R
Co-registered speckle contrast optical tomography and frequency domain-diffuse optical tomography for imaging of the fifth metatarsal.; Biomedical optics express; Vol 13(10), pp. 5358-5376. 2022 Sep 15.
1. Liu JTC
2. Bale G
3. Choe R
4. Elson DS
5. Oldenburg A
6. Tian L
7. Tkaczyk ER
Introduction to the Biophotonics Congress 2022 feature issue.; Biomedical optics express; Vol 14(1), pp. 385-386. 2022 Jan 20.
1. Leon S
2. Ren J
3. Choe R
4. Wu TT
Semiparametric mixed-effects model for analysis of non-invasive longitudinal hemodynamic responses during bone graft healing.; PloS one; Vol 17(4). 2022.
1. Johnson TW
2. Dar IA
3. Donohue KL
4. Xu YY
5. Santiago E
6. Selioutski O
7. Marinescu MA
8. Maddox RK
9. Wu TT
10. Schifitto G
11. Gosev I
12. Choe R
13. Khan IR
Cerebral Blood Flow Hemispheric Asymmetry in Comatose Adults Receiving Extracorporeal Membrane Oxygenation.; Frontiers in neuroscience; Vol 16. 2022.
1. Ackun-Farmmer MA
2. Overby CT
3. Haws BE
4. Choe R
5. Benoit DSW
Biomaterials for Orthopaedic Diagnostics and Theranostics.; Current opinion in biomedical engineering; Vol 19. 2021 Sep.
1. Leitgeb RA
2. Sampson D
3. Choe R
4. Hendon C
5. Eliceiri K
6. Tunnell J
Introduction to the Biophotonics Congress 2020 feature issue.; Biomedical optics express; Vol 12(1). 2021 Jan 01.
1. Dar IA
2. Khan IR
3. Maddox RK
4. Selioutski O
5. Donohue KL
6. Marinescu MA
7. Prasad SM
8. Quazi NH
9. Donlon JS
10. Loose EA
11. Ramirez GA
12. Ren J
13. Majeski JB
14. Abramson K
15. Durduran T
16. Busch DR
17. Choe R
Towards detection of brain injury using multimodal non-invasive neuromonitoring in adults undergoing extracorporeal membrane oxygenation.; Biomedical optics express; Vol 11(11). 2020 Nov 01.
1. Ren J
2. Ramirez GA
3. Proctor AR
4. Wu TT
5. Benoit DSW
6. Choe R
Spatial frequency domain imaging for the longitudinal monitoring of vascularization during mouse femoral graft healing.; Biomedical optics express; Vol 11(10). 2020 Oct 01.
1. Nugent NS
2. Majeski JB
3. Choe R
4. Rashedi E
Investigating the effect of fatigue on muscle microvasculature blood flow during intermittent isometric contraction.; Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference; Vol 2020. 2020 Jul.
1. Ren J
2. Han S
3. Proctor AR
4. Desa DE
5. Ramirez GA
6. Ching-Roa VRD
7. Majeski JB
8. Dar IA
9. Barber NE
10. Forti AM
11. Benoit DSW
12. Choe R
Longitudinal 3D Blood Flow Distribution Provided by Diffuse Correlation Tomography during Bone Healing in a Murine Fracture Model.; Photochemistry and photobiology; Vol 96(2). 2020 Mar.
1. Norris EG
2. Majeski J
3. Wayson SE
4. Coleman H
5. Choe R
6. Dalecki D
7. Hocking DC
Non-invasive acoustic fabrication methods to enhance collagen hydrogel bioactivity.; Materials research express; Vol 6(12). 2019 Dec.
1. Apiou-Sbirlea G
2. Choe R
3. Kleemann M
4. Tromberg BJ
Special Section Guest Editorial: Translational Biophotonics.; Journal of biomedical optics; Vol 24(2). 2019 Feb.
1. Proctor AR
2. Ramirez GA
3. Han S
4. Liu Z
5. Bubel TM
6. Choe R
Validation of diffuse correlation spectroscopy sensitivity to nicotinamide-induced blood flow elevation in the murine hindlimb using the fluorescent microsphere technique.; Journal of biomedical optics; Vol 23(3). 2018 Mar.
1. Han S
2. Proctor AR
3. Ren J
4. Benoit DSW
5. Choe R
Temporal blood flow changes measured by diffuse correlation tomography predict murine femoral graft healing.; PloS one; Vol 13(5). 2018.
1. Farzam P
2. Johansson J
3. Mireles M
4. Jiménez-Valerio G
5. Martínez-Lozano M
6. Choe R
7. Casanovas O
8. Durduran T
Pre-clinical longitudinal monitoring of hemodynamic response to anti-vascular chemotherapy by hybrid diffuse optics.; Biomedical optics express; Vol 8(5). 2017 May 01.
1. Han S
2. Proctor AR
3. Vella JB
4. Benoit DS
5. Choe R
Non-invasive diffuse correlation tomography reveals spatial and temporal blood flow differences in murine bone grafting approaches.; Biomedical optics express; Vol 7(9). 2016 Sep 01.
1. Ramirez G
2. Proctor AR
3. Jung KW
4. Wu TT
5. Han S
6. Adams RR
7. Ren J
8. Byun DK
9. Madden KS
10. Brown EB
11. Foster TH
12. Farzam P
13. Durduran T
14. Choe R
Chemotherapeutic drug-specific alteration of microvascular blood flow in murine breast cancer as measured by diffuse correlation spectroscopy.; Biomedical optics express; Vol 7(9). 2016 Sep 1.
1. Han S
2. Johansson J
3. Mireles M
4. Proctor AR
5. Hoffman MD
6. Vella JB
7. Benoit DS
8. Durduran T
9. Choe R
Non-contact scanning diffuse correlation tomography system for three-dimensional blood flow imaging in a murine bone graft model.; Biomedical optics express; Vol 6(7). 2015 Jul 1.
1. Chung SH
2. Feldman MD
3. Martinez D
4. Kim H
5. Putt ME
6. Busch DR
7. Tchou J
8. Czerniecki BJ
9. Schnall MD
10. Rosen MA
11. DeMichele A
12. Yodh AG
13. Choe R
Macroscopic optical physiological parameters correlate with microscopic proliferation and vessel area breast cancer signatures.; Breast cancer research : BCR; Vol 17. 2015 May 27.
1. Han S
2. Hoffman MD
3. Proctor AR
4. Vella JB
5. Mannoh EA
6. Barber NE
7. Kim HJ
8. Jung KW
9. Benoit DS
10. Choe R
Non-Invasive Monitoring of Temporal and Spatial Blood Flow during Bone Graft Healing Using Diffuse Correlation Spectroscopy.; PloS one; Vol 10(12). 2015.
1. Busch DR
2. Choe R
3. Durduran T
4. Friedman DH
5. Baker WB
6. Maidment AD
7. Rosen MA
8. Schnall MD
9. Yodh AG
Blood flow reduction in breast tissue due to mammographic compression.; Academic radiology; Vol 21(2). 2014 Feb.
1. Choe R
2. Putt ME
3. Carlile PM
4. Durduran T
5. Giammarco JM
6. Busch DR
7. Jung KW
8. Czerniecki BJ
9. Tchou J
10. Feldman MD
11. Mies C
12. Rosen MA
13. Schnall MD
14. DeMichele A
15. Yodh AG
Optically measured microvascular blood flow contrast of malignant breast tumors.; PloS one; Vol 9(6). 2014.
1. Busch DR
2. Choe R
3. Durduran T
4. Yodh AG
Towards non-invasive characterization of breast cancer and cancer metabolism with diffuse optics.; PET clinics; Vol 8(3). 2013 Jul.
1. Xu HN
2. Mir TA
3. Lee SC
4. Feng M
5. Farhad N
6. Choe R
7. Glickson JD
8. Li LZ
Mapping the redox state of CHOP-treated non-Hodgkin's lymphoma xenografts in mice.; Advances in experimental medicine and biology; Vol 789. 2013.
1. Busch DR
2. Choe R
3. Rosen MA
4. Guo W
5. Durduran T
6. Feldman MD
7. Mies C
8. Czerniecki BJ
9. Tchou J
10. Demichele A
11. Schnall MD
12. Yodh AG
Optical malignancy parameters for monitoring progression of breast cancer neoadjuvant chemotherapy.; Biomedical optics express; Vol 4(1). 2013 Jan 01.
1. Choe R
2. Durduran T
Diffuse Optical Monitoring of the Neoadjuvant Breast Cancer Therapy.; IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society; Vol 18(4). 2012 Jul.
1. Mesquita RC
2. Durduran T
3. Yu G
4. Buckley EM
5. Kim MN
6. Zhou C
7. Choe R
8. Sunar U
9. Yodh AG
Direct measurement of tissue blood flow and metabolism with diffuse optics.; Philosophical transactions. Series A, Mathematical, physical, and engineering sciences; Vol 369(1955). 2011 Nov 28.
1. Durduran T
2. Zhou C
3. Buckley EM
4. Kim MN
5. Yu G
6. Choe R
7. Gaynor JW
8. Spray TL
9. Durning SM
10. Mason SE
11. Montenegro LM
12. Nicolson SC
13. Zimmerman RA
14. Putt ME
15. Wang J
16. Greenberg JH
17. Detre JA
18. Yodh AG
19. Licht DJ
Optical measurement of cerebral hemodynamics and oxygen metabolism in neonates with congenital heart defects.; Journal of biomedical optics; Vol 15(3). 2010 May.
1. Kim MN
2. Durduran T
3. Frangos S
4. Edlow BL
5. Buckley EM
6. Moss HE
7. Zhou C
8. Yu G
9. Choe R
10. Maloney-Wilensky E
11. Wolf RL
12. Grady MS
13. Greenberg JH
14. Levine JM
15. Yodh AG
16. Detre JA
17. Kofke WA
Noninvasive measurement of cerebral blood flow and blood oxygenation using near-infrared and diffuse correlation spectroscopies in critically brain-injured adults.; Neurocritical care; Vol 12(2). 2010 Apr.
1. Busch DR
2. Guo W
3. Choe R
4. Durduran T
5. Feldman MD
6. Mies C
7. Rosen MA
8. Schnall MD
9. Czerniecki BJ
10. Tchou J
11. DeMichele A
12. Putt ME
13. Yodh AG
Computer aided automatic detection of malignant lesions in diffuse optical mammography.; Medical physics; Vol 37(4). 2010 Apr.
1. Cerniglia GJ
2. Pore N
3. Tsai JH
4. Schultz S
5. Mick R
6. Choe R
7. Xing X
8. Durduran T
9. Yodh AG
10. Evans SM
11. Koch CJ
12. Hahn SM
13. Quon H
14. Sehgal CM
15. Lee WM
16. Maity A
Epidermal growth factor receptor inhibition modulates the microenvironment by vascular normalization to improve chemotherapy and radiotherapy efficacy.; PloS one; Vol 4(8). 2009 Aug 06.
1. Buckley EM
2. Cook NM
3. Durduran T
4. Kim MN
5. Zhou C
6. Choe R
7. Yu G
8. Schultz S
9. Sehgal CM
10. Licht DJ
11. Arger PH
12. Putt ME
13. Hurt HH
14. Yodh AG
Cerebral hemodynamics in preterm infants during positional intervention measured with diffuse correlation spectroscopy and transcranial Doppler ultrasound.; Optics express; Vol 17(15). 2009 Jul 20.
1. Durduran T
2. Zhou C
3. Edlow BL
4. Yu G
5. Choe R
6. Kim MN
7. Cucchiara BL
8. Putt ME
9. Shah Q
10. Kasner SE
11. Greenberg JH
12. Yodh AG
13. Detre JA
Transcranial optical monitoring of cerebrovascular hemodynamics in acute stroke patients.; Optics express; Vol 17(5). 2009 Mar 02.
1. Choe R
2. Konecky SD
3. Corlu A
4. Lee K
5. Durduran T
6. Busch DR
7. Pathak S
8. Czerniecki BJ
9. Tchou J
10. Fraker DL
11. Demichele A
12. Chance B
13. Arridge SR
14. Schweiger M
15. Culver JP
16. Schnall MD
17. Putt ME
18. Rosen MA
19. Yodh AG
Differentiation of benign and malignant breast tumors by in-vivo three-dimensional parallel-plate diffuse optical tomography.; Journal of biomedical optics; Vol 14(2). 2009 Mar.
1. Choe R
Diffuse optical tomography & spectroscopy in breast cancer characterization & therapy monitoring at UPENN.; Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference; Vol 2009. 2009.
1. Perini R
2. Choe R
3. Yodh AG
4. Sehgal C
5. Divgi CR
6. Rosen MA
Non-invasive assessment of tumor neovasculature: techniques and clinical applications.; Cancer metastasis reviews; Vol 27(4). 2008 Dec.
1. Konecky SD
2. Choe R
3. Corlu A
4. Lee K
5. Wiener R
6. Srinivas SM
7. Saffer JR
8. Freifelder R
9. Karp JS
10. Hajjioui N
11. Azar F
12. Yodh AG
Comparison of diffuse optical tomography of human breast with whole-body and breast-only positron emission tomography.; Medical physics; Vol 35(2). 2008 Feb.
1. Azar FS
2. Lee K
3. Khamene A
4. Choe R
5. Corlu A
6. Konecky SD
7. Sauer F
8. Yodh AG
Standardized platform for coregistration of nonconcurrent diffuse optical and magnetic resonance breast images obtained in different geometries.; Journal of biomedical optics; Vol 12(5). 2007 Sep.
1. Zhou C
2. Choe R
3. Shah N
4. Durduran T
5. Yu G
6. Durkin A
7. Hsiang D
8. Mehta R
9. Butler J
10. Cerussi A
11. Tromberg BJ
12. Yodh AG
Diffuse optical monitoring of blood flow and oxygenation in human breast cancer during early stages of neoadjuvant chemotherapy.; Journal of biomedical optics; Vol 12(5). 2007 Sep.
1. Corlu A
2. Choe R
3. Durduran T
4. Rosen MA
5. Schweiger M
6. Arridge SR
7. Schnall MD
8. Yodh AG
Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans.; Optics express; Vol 15(11). 2007 May 28.
1. Sunar U
2. Quon H
3. Durduran T
4. Zhang J
5. Du J
6. Zhou C
7. Yu G
8. Choe R
9. Kilger A
10. Lustig R
11. Loevner L
12. Nioka S
13. Chance B
14. Yodh AG
Noninvasive diffuse optical measurement of blood flow and blood oxygenation for monitoring radiation therapy in patients with head and neck tumors: a pilot study.; Journal of biomedical optics; Vol 11(6). 2006 Nov.
1. Durduran T
2. Choe R
3. Yu G
4. Zhou C
5. Tchou JC
6. Czerniecki BJ
7. Yodh AG
Diffuse optical measurement of blood flow in breast tumors.; Optics letters; Vol 30(21). 2005 Nov 01.