URochester Medicine / Labs / Yu Lab / Publications

Publications from the Yi-Tao Yu Lab

1. Yan J
2. Yi T
3. Tian W
4. Wu J
5. Yu R
6. Zhang S
7. Cheng Z
8. Di X
9. Jiang H
10. Wen D
11. Zhang S
RFC5 and STAT3 form a transcriptional complex to drive NSCLC progression via c-Myc.; iScience; Vol 29(9), pp. 117246. 2026 Aug 18.
1. Price JDW
2. Vizeacoumar FS
3. Abuhussein O
4. Maranda V
5. Zhang Y
6. Adachi H
7. Nguyen K
8. Kyrylenko L
9. Rangel-Pozzo A
10. Dong H
11. Gong L
12. Materi A
13. Walke P
14. Ganapathysamy A
15. Denomy C
16. Freywald T
17. Dahiya R
18. Elhasasna H
19. Saxena A
20. Vizeacoumar JP
21. Patel H
22. Rajamanickam K
23. de Oliveira DM
24. Lazell-Wright M
25. Morales AM
26. Aggarwal A
27. Xu JL
28. Alli N
29. Munhoz EP
30. Gao P
31. Salsman J
32. Dahiya DK
33. Kola NS
34. Gonzalez-Lopez C
35. Thibault P
36. Levin M
37. Dellaire G
38. Jette N
39. Groot G
40. Köbel M
41. Lee CH
42. Hopkins L
43. Krishnan A
44. Ahmed S
45. Eskiw C
46. Barakat KH
47. Thakur A
48. Wu Y
49. DePinho RA
50. Mai S
51. Yu YT
52. Wong JMY
53. Freywald A
54. Vizeacoumar FJ
Epigenetic control of telomeric RNA maintains heterochromatin in telomerase-driven cancers.; Signal transduction and targeted therapy; Vol 11(1). 2026 Jun 04.
1. Hu F
2. Yu C
3. Wu Y
4. Yi T
5. Chen L
6. Li S
A Case of Cushing's Cardiomyopathy with a Convoluted Course of Treatment.; CJC open; Vol 8(8), pp. 1036-1040. 2026 Apr 08.
1. Guo Q
2. Lv H
3. Dong R
4. Yi W
5. Wang H
6. Liu H
7. Yu DG
8. Yi T
Fast Dissolving Resveratrol-Polyvinylpyrrolidone Nanofibrous Films Fabricated in Bulk Using a Special Hole Electrospinning Technique.; Polymers; Vol 18(7). 2026 Mar 25.
1. Liu C
2. Lei M
3. Chen J
4. Huang M
5. Lu Y
6. Chen Y
7. Wu D
8. Tan X
9. Liang Y
10. Zhao X
11. He G
12. Yu L
13. Huang M
14. He T
15. Yang C
16. Zhang G
17. Xu J
18. Liao R
19. Lu S
20. He S
21. Qiu H
22. Chen Y
23. Zhao Z
24. Liang J
25. Xu F
26. Liu S
27. He Y
28. Lv Y
29. Yuan Z
30. He H
31. Deng H
32. Jiang Y
33. Huang W
34. Zhuang X
35. Qiu X
36. Liu Q
37. Huang R
38. Yang K
39. Peng Y
40. Ye Y
41. Ke J
42. Dou Q
43. Deng W
44. Zhang H
45. Kang X
46. Liu N
47. Chen J
48. Zhu W
49. Song F
50. Liu Y
51. Xie S
52. Gu H
53. Shao W
54. Luo L
55. Huang Y
56. Wu Z
57. Liu P
58. Liao M
59. Ye S
60. Tu X
61. Wu J
62. Wu M
63. Chen Y
64. Zhang W
65. Fu H
66. Ding H
67. Shao X
68. Lou A
69. Chen Y
70. Fan Z
71. Lei Z
72. Yan J
73. Chen X
74. Peng N
75. Lv W
76. Feng Y
77. Liang Q
78. He M
79. Huang Z
80. Li T
81. Li J
82. Fan W
83. Lai Z
84. He Y
85. Zhang Y
86. Qiu H
87. Yu Y
88. Huang Y
89. Liu D
90. Quan W
91. Zhang H
92. Li J
93. Wu L
94. Yi T
95. Wu W
96. Xie S
97. Huang W
98. Yang Y
99. Wen G
100. He Y
101. Wu J
102. Chen Q
103. Liu C
104. Hua Z
105. Yang X
106. Wang K
107. Hu J
108. Mao C
109. Li J
110. Song P
111. Jiang C
112. Zhong W
113. Li X
114. Zhang J
115. Hu B
116. Tang Y
117. Lian Z
118. Liu L
119. Liu W
120. Wu Q
121. Chai Y
122. Lai X
123. Zheng Y
124. Lu Y
125. Li D
126. Zhou Z
127. Lin Q
128. Liang G
129. Zhu H
130. Zhong F
131. Du M
132. Huang Y
133. Zeng X
134. Zhan H
135. Wang F
136. Yu W
137. Wu P
138. Wang R
139. Liu B
140. Yu L
141. Chen C
142. Wu H
143. Wu Z
144. Wang L
145. Zhang L
146. Guo T
147. Xiao W
148. Li G
149. Lin S
150. Yan F
151. Gao Y
152. Chen Y
153. Wang H
154. Chen R
155. Gu D
156. Zheng W
157. Liang C
158. Zhang Y
159. Wang Y
160. Feng X
161. Xiao F
162. Huang X
163. Liao G
164. Yuan Y
165. Deng S
166. Liu Q
167. Zheng Z
168. Zhang Y
10 years trends and hospitalization outcomes of non-neonatal tetanus: a large-scale multicenter retrospective study in China.; Critical care (London, England); Vol 30(1). 2026 Mar 19.
1. Zhang W
2. Wang Q
3. Yi W
4. Wang H
5. Yu DG
6. Yi T
Electrospun PLA/PVP K90 Biphasic-Release Sublingual Film for Motion Sickness Treatment.; Biomolecules; Vol 16(3). 2026 Feb 28.
1. Chen Y
2. Gong W
3. Zhang Z
4. Zhou J
5. Yu DG
6. Yi T
Correction: Chen et al. Reverse Gradient Distributions of Drug and Polymer Molecules Within Electrospun Core-Shell Nanofibers for Sustained Release. Int. J. Mol. Sci. 2024, 25, 9524.; International journal of molecular sciences; Vol 26(19). 2025 Sep 30.
1. Pan Y
2. Kierzek E
3. Kierzek R
4. Mathews DH
5. Yu YT
A Ψ-Ψ codon-anticodon pairing in nonsense suppression and translational recoding.; Nature chemical biology. 2025 Sep 12.
1. Chen Y
2. Gong W
3. Zhang Z
4. Zhou J
5. Yu DG
6. Yi T
Reverse Gradient Distributions of Drug and Polymer Molecules within Electrospun Core-Shell Nanofibers for Sustained Release.; International journal of molecular sciences; Vol 25(17). 2024 Sep 01.
1. Morais P
2. Zhang R
3. Yu YT
Therapeutic Nonsense Suppression Modalities: From Small Molecules to Nucleic Acid-Based Approaches.; Biomedicines; Vol 12(6). 2024 Jun 10.
1. Pan Y
2. Adachi H
3. He X
4. Chen JL
5. Yu YT
6. Boutz PL
Updated Pseudo-seq Protocol for Transcriptome-Wide Detection of Pseudouridines.; Bio-protocol; Vol 14(9), pp. e4985. 2024 May 05.
1. Chen JL
2. Leeder WM
3. Morais P
4. Adachi H
5. Yu YT
Pseudouridylation-mediated gene expression modulation.; The Biochemical journal; Vol 481(1), pp. 1-16. 2024 Jan 10.
1. Zhou J
2. Dai Y
3. Fu J
4. Yan C
5. Yu DG
6. Yi T
Dual-Step Controlled Release of Berberine Hydrochloride from the Trans-Scale Hybrids of Nanofibers and Microparticles.; Biomolecules; Vol 13(6). 2023 Jun 18.
1. Sheng Y
2. Yu Q
3. Huang Y
4. Zhu Q
5. Chen Z
6. Wu W
7. Yi T
8. Lu Y
Pickering Emulsions Enhance Oral Bioavailability of Curcumin Nanocrystals: The Effect of Oil Types.; Pharmaceutics; Vol 15(5). 2023 Apr 26.
1. Adachi H
2. Pan Y
3. He X
4. Chen JL
5. Klein B
6. Platenburg G
7. Morais P
8. Boutz P
9. Yu YT
Targeted pseudouridylation: An approach for suppressing nonsense mutations in disease genes.; Molecular cell. 2023 Feb 03.
1. Adachi H
2. Chen JL
3. Yin Q
4. Morais P
5. Yu YT
In Vitro Reconstitution of Pseudouridylation Catalyzed by Human Box H/ACA Ribonucleoprotein Particles.; Methods in molecular biology (Clifton, N.J.); Vol 2666, pp. 177-191. 2023.
1. Liu Q
2. Yu G
3. Zhu C
4. Peng B
5. Li R
6. Yi T
7. Yu Y
An Integrated Droplet Manipulation Platform with Photodeformable Microfluidic Channels.; Small methods; Vol 5(12), pp. e2100969. 2021 Nov 16.
1. Adachi H
2. Hengesbach M
3. Yu YT
4. Morais P
From Antisense RNA to RNA Modification: Therapeutic Potential of RNA-Based Technologies.; Biomedicines; Vol 9(5). 2021 May 14.
1. Zhang D
2. Yu W
3. Li S
4. Xia Y
5. Li X
6. Li Y
7. Yi T
Artificial Light-Harvesting Metallacycle System with Sequential Energy Transfer for Photochemical Catalysis.; Journal of the American Chemical Society; Vol 143(3), pp. 1313-1317. 2021 Jan 15.
1. Morais P
2. Adachi H
3. Yu YT
The Critical Contribution of Pseudouridine to mRNA COVID-19 Vaccines.; Frontiers in cell and developmental biology; Vol 9. 2021.
1. Morais P
2. Adachi H
3. Yu YT
Spliceosomal snRNA Epitranscriptomics.; Frontiers in genetics; Vol 12. 2021.
1. Morais P
2. Adachi H
3. Yu YT
Suppression of Nonsense Mutations by New Emerging Technologies.; International journal of molecular sciences; Vol 21(12). 2020 Jun 20.
1. Adachi H
2. Yu YT
Pseudouridine-mediated stop codon read-through in S. cerevisiae is sequence context-independent.; RNA (New York, N.Y.). 2020 May 20.
1. Li X
2. Yao Y
3. Zhao B
4. Wu H
5. Chen B
6. Yi T
Characteristics and performances of a small-scale model of the closed-circuit multiple controlled fan wind tunnel.; The Review of scientific instruments; Vol 90(4), pp. 045104. 2019 Apr.
1. Geng L
2. Yu X
3. Li Y
4. Wang Y
5. Wu Y
6. Ren J
7. Xue F
8. Yi T
Instant hydrogel formation of terpyridine-based complexes triggered by DNA via non-covalent interaction.; Nanoscale; Vol 11(9), pp. 4044-4052. 2019 Feb 28.
1. Xu Z
2. Xia Y
3. Xiao Z
4. Jia Y
5. Li L
6. Jin Y
7. Zhao Q
8. Wan L
9. Yi T
10. Yu Y
11. Wen Q
12. Zhu Y
13. Qin B
14. Zhang F
15. Shen J
Comprehensive profiling of JMJD3 in gastric cancer and its influence on patient survival.; Scientific reports; Vol 9(1), pp. 868. 2019 Jan 29.
1. Adachi H
2. DeZoysa MD
3. Yu YT
Detection and Quantification of Pseudouridine in RNA.; Methods in molecular biology (Clifton, N.J.); Vol 1870. 2019.
1. Adachi H
2. De Zoysa MD
3. Yu YT
Post-transcriptional pseudouridylation in mRNA as well as in some major types of noncoding RNAs.; Biochimica et biophysica acta. Gene regulatory mechanisms. 2018 Nov 08.
1. De Zoysa MD
2. Wu G
3. Katz R
4. Yu YT
Guide-substrate base-pairing requirement for box H/ACA RNA-guided RNA pseudouridylation.; RNA (New York, N.Y.). 2018 Jun 05.
1. Zhao Y
2. Dunker W
3. Yu YT
4. Karijolich J
The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events.; Frontiers in bioengineering and biotechnology; Vol 6. 2018.
1. Ge J
2. Karijolich J
3. Zhai Y
4. Zheng J
5. Yu YT
5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding.; Genes; Vol 8(11). 2017 Oct 31.
1. Poole AR
2. Vicino I
3. Adachi H
4. Yu YT
5. Hebert MD
Regulatory RNPs: a novel class of ribonucleoproteins that potentially contribute to ribosome heterogeneity.; Biology open. 2017 Aug 14.
1. De Zoysa MD
2. Yu YT
Posttranscriptional RNA Pseudouridylation.; The Enzymes; Vol 41. 2017.
1. Xu C
2. Ishikawa H
3. Izumikawa K
4. Li L
5. He H
6. Nobe Y
7. Yamauchi Y
8. Shahjee HM
9. Wu XH
10. Yu YT
11. Isobe T
12. Takahashi N
13. Min J
Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly.; Genes & development; Vol 30(21). 2016 Nov 01.
1. Wu G
2. Radwan MK
3. Xiao M
4. Adachi H
5. Fan J
6. Yu YT
The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA.; RNA (New York, N.Y.). 2016 Jun 7.
1. Wu G
2. Adachi H
3. Ge J
4. Stephenson D
5. Query CC
6. Yu YT
Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly.; The EMBO journal; Vol 35(6). 2016 Mar 15.
1. Huang C
2. Karijolich J
3. Yu YT
Detection and quantification of RNA 2'-O-methylation and pseudouridylation.; Methods (San Diego, Calif.). 2016 Feb 4.
1. Huang C
2. Wu G
3. Yu YT
Purification and Functional Reconstitution of Box H/ACA Ribonucleoprotein Particles.; Methods in molecular biology (Clifton, N.J.); Vol 1421. 2016.
1. Karijolich J
2. Yi C
3. Yu YT
Transcriptome-wide dynamics of RNA pseudouridylation.; Nature reviews. Molecular cell biology; Vol 16(10). 2015 Oct.
1. Karijolich J
2. Yu YT
The new era of RNA modification.; RNA (New York, N.Y.); Vol 21(4). 2015 Apr.
1. Wu G
2. Huang C
3. Yu YT
Pseudouridine in mRNA: Incorporation, Detection, and Recoding.; Methods in enzymology; Vol 560. 2015.
1. Enwerem II
2. Wu G
3. Yu YT
4. Hebert MD
Cajal body proteins differentially affect the processing of box C/D scaRNPs.; PloS one; Vol 10(4). 2015.
1. Adachi H
2. Yu YT
Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation.; World journal of biological chemistry; Vol 5(4). 2014 Nov 26.
1. Karijolich J
2. Yu YT
Therapeutic suppression of premature termination codons: mechanisms and clinical considerations (review).; International journal of molecular medicine; Vol 34(2). 2014 Aug.
1. Lim SJ
2. Scott A
3. Xiong XP
4. Vahidpour S
5. Karijolich J
6. Guo D
7. Pei S
8. Yu YT
9. Zhou R
10. Li WX
Requirement for CRIF1 in RNA interference and Dicer-2 stability.; RNA biology; Vol 11(9). 2014.
1. Yu YT
2. Meier UT
RNA-guided isomerization of uridine to pseudouridine--pseudouridylation.; RNA biology; Vol 11(12). 2014.
1. Adachi H
2. Yu YT
Purification of radiolabeled RNA products using denaturing gel electrophoresis.; Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]; Vol 105. 2014.
1. Fernández IS
2. Ng CL
3. Kelley AC
4. Wu G
5. Yu YT
6. Ramakrishnan V
Unusual base pairing during the decoding of a stop codon by the ribosome.; Nature; Vol 500(7460). 2013 Aug 01.
1. Ge J
2. Yu YT
RNA pseudouridylation: new insights into an old modification.; Trends in biochemical sciences; Vol 38(4). 2013 Apr.
1. Huang C
2. Yu YT
Synthesis and labeling of RNA in vitro.; Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]; Vol Chapter 4. 2013 Apr.