Publications from the Yi-Tao Yu Lab
Publications from the Yi-Tao Yu Lab
- A Ψ-Ψ codon-anticodon pairing in nonsense suppression and translational recoding.; Nature chemical biology. 2025 Sep 12.
- Therapeutic Nonsense Suppression Modalities: From Small Molecules to Nucleic Acid-Based Approaches.; Biomedicines; Vol 12(6). 2024 Jun 10.
- Updated Pseudo-seq Protocol for Transcriptome-Wide Detection of Pseudouridines.; Bio-protocol; Vol 14(9), pp. e4985. 2024 May 05.
- Pseudouridylation-mediated gene expression modulation.; The Biochemical journal; Vol 481(1), pp. 1-16. 2024 Jan 10.
- Targeted pseudouridylation: An approach for suppressing nonsense mutations in disease genes.; Molecular cell. 2023 Feb 03.
- In Vitro Reconstitution of Pseudouridylation Catalyzed by Human Box H/ACA Ribonucleoprotein Particles.; Methods in molecular biology (Clifton, N.J.); Vol 2666, pp. 177-191. 2023.
- From Antisense RNA to RNA Modification: Therapeutic Potential of RNA-Based Technologies.; Biomedicines; Vol 9(5). 2021 May 14.
- Spliceosomal snRNA Epitranscriptomics.; Frontiers in genetics; Vol 12. 2021.
- The Critical Contribution of Pseudouridine to mRNA COVID-19 Vaccines.; Frontiers in cell and developmental biology; Vol 9. 2021.
- Suppression of Nonsense Mutations by New Emerging Technologies.; International journal of molecular sciences; Vol 21(12). 2020 Jun 20.
- Pseudouridine-mediated stop codon read-through in S. cerevisiae is sequence context-independent.; RNA (New York, N.Y.). 2020 May 20.
- Detection and Quantification of Pseudouridine in RNA.; Methods in molecular biology (Clifton, N.J.); Vol 1870. 2019.
- Post-transcriptional pseudouridylation in mRNA as well as in some major types of noncoding RNAs.; Biochimica et biophysica acta. Gene regulatory mechanisms. 2018 Nov 08.
- Guide-substrate base-pairing requirement for box H/ACA RNA-guided RNA pseudouridylation.; RNA (New York, N.Y.). 2018 Jun 05.
- The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events.; Frontiers in bioengineering and biotechnology; Vol 6. 2018.
- 5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding.; Genes; Vol 8(11). 2017 Oct 31.
- Regulatory RNPs: a novel class of ribonucleoproteins that potentially contribute to ribosome heterogeneity.; Biology open. 2017 Aug 14.
- Posttranscriptional RNA Pseudouridylation.; The Enzymes; Vol 41. 2017.
- Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly.; Genes & development; Vol 30(21). 2016 Nov 01.
- The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA.; RNA (New York, N.Y.). 2016 Jun 7.
- Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly.; The EMBO journal; Vol 35(6). 2016 Mar 15.
- Detection and quantification of RNA 2'-O-methylation and pseudouridylation.; Methods (San Diego, Calif.). 2016 Feb 4.
- Purification and Functional Reconstitution of Box H/ACA Ribonucleoprotein Particles.; Methods in molecular biology (Clifton, N.J.); Vol 1421. 2016.
- Transcriptome-wide dynamics of RNA pseudouridylation.; Nature reviews. Molecular cell biology; Vol 16(10). 2015 Oct.
- The new era of RNA modification.; RNA (New York, N.Y.); Vol 21(4). 2015 Apr.
- Pseudouridine in mRNA: Incorporation, Detection, and Recoding.; Methods in enzymology; Vol 560. 2015.
- Cajal body proteins differentially affect the processing of box C/D scaRNPs.; PloS one; Vol 10(4). 2015.
- Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation.; World journal of biological chemistry; Vol 5(4). 2014 Nov 26.
- Therapeutic suppression of premature termination codons: mechanisms and clinical considerations (review).; International journal of molecular medicine; Vol 34(2). 2014 Aug.
- Requirement for CRIF1 in RNA interference and Dicer-2 stability.; RNA biology; Vol 11(9). 2014.
- RNA-guided isomerization of uridine to pseudouridine--pseudouridylation.; RNA biology; Vol 11(12). 2014.
- Purification of radiolabeled RNA products using denaturing gel electrophoresis.; Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]; Vol 105. 2014.
- Unusual base pairing during the decoding of a stop codon by the ribosome.; Nature; Vol 500(7460). 2013 Aug 01.
- RNA pseudouridylation: new insights into an old modification.; Trends in biochemical sciences; Vol 38(4). 2013 Apr.
- Synthesis and labeling of RNA in vitro.; Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]; Vol Chapter 4. 2013 Apr.
- Synthesis and labeling of RNA in vitro.; Wiley Current Protocols in Molecular Biology. 2013 Jan 01.
- Inducing nonsense suppression by targeted pseudouridylation.; Nature protocols; Vol 7(4). 2012 Mar 29.
- Inducing nonsense suppression by targeted pseudouridylation.; Nature Protocols; Vol 7, pp. 789-800. 2012 Jan 01.
- Pseudouridines in spliceosomal snRNAs.; Protein & cell; Vol 2(9). 2011 Sep.
- Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation.; Wiley interdisciplinary reviews. RNA; Vol 2(4). 2011 Jul.
- Converting nonsense codons into sense codons by targeted pseudouridylation.; Nature; Vol 474(7351). 2011 Jun 16.
- U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP.; The EMBO journal; Vol 30(1). 2011 Jan 05.
- Post-transcriptional modification of RNAs by artificial Box H/ACA and Box C/D RNPs.; Methods in molecular biology (Clifton, N.J.); Vol 718. 2011.
- Functions and Mechanisms of Spliceosomal snRNA pseudouridylation.; Wiley Interdisciplinary Reviews (WIREs) RNA; Vol 2, pp. 571-581. 2011 Jan 01.
- Pseudouridines in spliceosomal snRNAs.; Protein & Cell; Vol 2, pp. 712-725. 2011 Jan 01.
- Targeted 2'-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo.; Molecular and cellular biology; Vol 30(18). 2010 Sep.
- A flexible RNA backbone within the polypyrimidine tract is required for U2AF65 binding and pre-mRNA splicing in vivo.; Molecular and cellular biology; Vol 30(17). 2010 Sep.
- Regulation of pre-mRNA splicing in Xenopus oocytes by targeted 2'-O-methylation.; RNA (New York, N.Y.); Vol 16(5). 2010 May.
- Spliceosomal snRNA modifications and their function.; RNA biology; Vol 7(2). 2010 Mar.
- RNA modifications: a mechanism that modulates gene expression.; Methods in molecular biology (Clifton, N.J.); Vol 629. 2010.