URMC / Labs / Yu Lab / Publications Publications Zhao YDunker WYu YTKarijolich J (2018). The Role of Noncoding RNA Pseudouridylation in Nuclear Gene Expression Events. Frontiers in bioengineering and biotechnology. Ge JKarijolich JZhai YZheng JYu YT (2017 Oct 31). 5-Fluorouracil Treatment Alters the Efficiency of Translational Recoding. Genes. Poole ARVicino IAdachi HYu YTHebert MD (2017 Aug 14). Regulatory RNPs: a novel class of ribonucleoproteins that potentially contribute to ribosome heterogeneity. Biology open. De Zoysa MDYu YT (2017). Posttranscriptional RNA Pseudouridylation. The Enzymes. Xu CIshikawa HIzumikawa KLi LHe HNobe YYamauchi YShahjee HMWu XHYu YTIsobe TTakahashi NMin J (2016 Nov 01). Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly. Genes & development. Wu GRadwan MKXiao MAdachi HFan JYu YT (2016 Jun 7). The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA. RNA (New York, N.Y.). Wu GAdachi HGe JStephenson DQuery CCYu YT (2016 Mar 15). Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly. The EMBO journal. Huang CKarijolich JYu YT (2016 Feb 4). Detection and quantification of RNA 2'-O-methylation and pseudouridylation. Methods (San Diego, Calif.). Huang CWu GYu YT (2016). Purification and Functional Reconstitution of Box H/ACA Ribonucleoprotein Particles. Methods in molecular biology (Clifton, N.J.). Karijolich JYi CYu YT (2015 Oct). Transcriptome-wide dynamics of RNA pseudouridylation. Nature reviews. Molecular cell biology. Karijolich JYu YT (2015 Apr). The new era of RNA modification. RNA (New York, N.Y.). Enwerem IIWu GYu YTHebert MD (2015). Cajal body proteins differentially affect the processing of box C/D scaRNPs. PloS one. Wu GHuang CYu YT (2015). Pseudouridine in mRNA: Incorporation, Detection, and Recoding. Methods in enzymology. Adachi HYu YT (2014 Nov 26). Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation. World journal of biological chemistry. Karijolich JYu YT (2014 Aug). Therapeutic suppression of premature termination codons: mechanisms and clinical considerations (review). International journal of molecular medicine. Adachi HYu YT (2014). Purification of radiolabeled RNA products using denaturing gel electrophoresis. Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]. Lim SJScott AXiong XPVahidpour SKarijolich JGuo DPei SYu YTZhou RLi WX (2014). Requirement for CRIF1 in RNA interference and Dicer-2 stability. RNA biology. Yu YTMeier UT (2014). RNA-guided isomerization of uridine to pseudouridine--pseudouridylation. RNA biology. Fernández ISNg CLKelley ACWu GYu YTRamakrishnan V (2013 Aug 01). Unusual base pairing during the decoding of a stop codon by the ribosome. Nature. Ge JYu YT (2013 Apr). RNA pseudouridylation: new insights into an old modification. Trends in biochemical sciences. Huang CYu YT (2013 Apr). Synthesis and labeling of RNA in vitro. Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]. Huang CYu YT (2013 Jan 01). Synthesis and labeling of RNA in vitro. Wiley Current Protocols in Molecular Biology. Huang CWu GYu YT (2012 Mar 29). Inducing nonsense suppression by targeted pseudouridylation. Nature protocols. Huang CWu GYu YT (2012 Jan 01). Inducing nonsense suppression by targeted pseudouridylation. Nature Protocols. Yu ATGe JYu YT (2011 Sep). Pseudouridines in spliceosomal snRNAs. Protein & cell. Wu GYu ATKantartzis AYu YT (2011 Jul). Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation. Wiley interdisciplinary reviews. RNA. Karijolich JYu YT (2011 Jun 16). Converting nonsense codons into sense codons by targeted pseudouridylation. Nature. Wu GXiao MYang CYu YT (2011 Jan 5). U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. The EMBO journal. Huang CKarijolich JYu YT (2011). Post-transcriptional modification of RNAs by artificial Box H/ACA and Box C/D RNPs. Methods in molecular biology (Clifton, N.J.). Wu GYu ATKantartzis AYu YT (2011 Jan 01). Functions and Mechanisms of Spliceosomal snRNA pseudouridylation. Wiley Interdisciplinary Reviews (WIREs) RNA. Yu ATGe JYu YT (2011 Jan 01). Pseudouridines in spliceosomal snRNAs. Protein & Cell. Huang CYu YT (2010 Sep). Targeted 2'-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo. Molecular and cellular biology. Chen CZhao XKierzek RYu YT (2010 Sep). A flexible RNA backbone within the polypyrimidine tract is required for U2AF65 binding and pre-mRNA splicing in vivo. Molecular and cellular biology. Ge JLiu HYu YT (2010 May). Regulation of pre-mRNA splicing in Xenopus oocytes by targeted 2'-O-methylation. RNA (New York, N.Y.). Karijolich JYu YT (2010 Mar). Spliceosomal snRNA modifications and their function. RNA biology. Karijolich JKantartzis AYu YT (2010). RNA modifications: a mechanism that modulates gene expression. Methods in molecular biology (Clifton, N.J.). Karijolich JKantartzis AYu YT (2010). Quantitative analysis of RNA modifications. Methods in molecular biology (Clifton, N.J.). Xiao MYang CSchattner PYu YT (2009 Jan). Functionality and substrate specificity of human box H/ACA guide RNAs. RNA (New York, N.Y.). Karijolich JHuang CYu YT (2009 Jan 01). Spliceosomal snRNA pseudouridylation. In DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution (ed. H. Grosjean). Landes Bioscience.. Karijolich JYu YT (2008 Jul 1). Insight into the Protein Components of the Box H/ACA RNP. Current proteomics. Zhao XYu YT (2008 Jan). Targeted pre-mRNA modification for gene silencing and regulation. Nature methods. Stephenson DKarijolich JYu YT (2008 Jan 01). Functional roles of spliceosomal snRNA modifications in pre-mRNA splicing. In RNA and DNA Editing: Molecular Mechanisms and Their Integration into Biological Systems (ed. H. Smith). John Wiley & Sons Press, Hoboken, New Jersey, USA.. Zhao XYu YT (2007). Incorporation of 5-fluorouracil into U2 snRNA blocks pseudouridylation and pre-mRNA splicing in vivo. Nucleic acids research. Karijolich JStephenson DYu YT (2007). Biochemical purification of box H/ACA RNPs involved in pseudouridylation. Methods in enzymology. Dai QFong RSaikia MStephenson DYu YTPan TPiccirilli JA (2007). Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic acids research. Karijolich JYu YT (2007 Jan 01). Pre-mRNA splicing Wiley Encyclopedia of Chemical Biology. (ed. TP Begley). Yu YT (2006 Feb). The most complex pseudouridylase. Structure (London, England : 1993). Moon KHZhao XYu YT (2006). Pre-mRNA splicing in the nuclei of Xenopus oocytes. Methods in molecular biology (Clifton, N.J.). Ma XYang CAlexandrov AGrayhack EJBehm-Ansmant IYu YT (2005 Jul 6). Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism. The EMBO journal. Yang CMcPheeters DSYu YT (2005 Feb 25). Psi35 in the branch site recognition region of U2 small nuclear RNA is important for pre-mRNA splicing in Saccharomyces cerevisiae. The Journal of biological chemistry.