URochester Medicine / Biochemistry & Biophysics / Research / Recent Publications

Recent Publications

1. Simpson LA
2. Dunn DM
3. Fales W
4. Moore ZJ
5. Ciesla JH
6. Waild NC
7. Raymonda MH
8. Harris IS
9. Munger J
HCMV infection depends on EGLN1-mediated mitochondrial activation to increase dNTP pools for viral DNA replication.; Cell reports; Vol 45(5), pp. 117329. 2026 Apr 29.
1. Gigas J
2. Meadow ME
3. Guo J
4. Lan C
5. Hillpot E
6. Martinez JC
7. Tombline G
8. Bellomio P
9. Almodovar VR
10. Welle KA
11. Swovick K
12. Hryhorenko JR
13. Ablaeva J
14. Ghaemmaghami S
15. Seluanov A
16. Gorbunova V
Long-lived mammals contain more phosphorylation sites in the SIRT6 C-terminus that enhance PARP1 interaction and resistance to oxidative stress.; bioRxiv : the preprint server for biology. 2026 Apr 24.
1. Ebrahim SAM
2. Talross GJS
3. Dweck HKM
4. Shepard JJ
5. Carlson JR
A phytoscreen identifies a garlic compound as a deterrent of mating and egg laying in Drosophila and mosquitoes.; Cell. 2026 Apr 17.
1. Kierzek E
2. Shabangu TS
3. Hiltke OM
4. Miaro M
5. Arteaga S
6. Znosko BM
7. Jolley EA
8. Bevilacqua PC
9. SantaLucia J
10. SantaLucia HA
11. Lin H
12. Metkar M
13. Aviran S
14. Soszyńska-Jóźwiak M
15. Kierzek R
16. Mathews DH
RNA Folding Nearest Neighbor Parameters Including the Modification 1-Methyl-Pseudouridine.; bioRxiv : the preprint server for biology. 2026 Apr 11.
1. Hsieh KL
2. Panagoda NT
3. Jenkins JL
4. Sampson NS
Kinetic Insights into Cholera Toxin B-Biomimetic Glycan Interactions.; Biomacromolecules. 2026 Apr 07.
1. Linares I
2. Creveling A
3. Osman A
4. Grandwetter N
5. Miller BL
6. McGrath JL
7. Awad HA
A human synovial tendon-on-a-chip models key features of peritendinous adhesions and offers a new approach methodology for testing anti-fibrotic drugs.; bioRxiv : the preprint server for biology. 2026 Apr 07.
1. Waild NC
2. Ciesla JH
3. Schafer XL
4. Munger J
Cellular antibody affinity-based CRISPR screening identifies JUNB as a broadly acting antiviral factor.; Proceedings of the National Academy of Sciences of the United States of America; Vol 123(14), pp. e2534154123. 2026 Mar 30.
1. Malik A
2. Zhou T
3. Tang WY
4. Mathews DH
5. Huang L
Motif Server: Web Server for Undesignable RNA Motifs and Structures.; Journal of molecular biology. 2026 Mar 25.
1. Hecht F
2. Zocchi M
3. Tuttle ET
4. Ward NP
5. Alimohammadi F
6. Khan AA
7. Gomes VC
8. Smith B
9. Twardowski JJ
10. Mills BN
11. Welle KA
12. Ghaemmaghami S
13. Zhou Z
14. Gan Y
15. Kang YP
16. Cazarin J
17. Soares ZG
18. Ozgurses ME
19. Zhao H
20. Sheehan C
21. Cognet G
22. Munger LD
23. Trivedi D
24. Asantewaa G
25. Blick-Nitko SK
26. Zoeller JJ
27. Chen Y
28. Vasiliou V
29. Turner BM
30. Mello SS
31. Altman BJ
32. Muir A
33. Coloff JL
34. Munger J
35. DeNicola GM
36. Harris IS
Catabolism of extracellular glutathione supplies cysteine to support tumours.; Nature. 2026 Mar 18.
1. Neupane R
2. Natarajan K
3. Suarez EE
4. Pownall HJ
5. Huang KL
6. Wagner EJ
7. Verma AK
8. Majji R
9. Yalamanchili HK
10. Guha A
11. Thandavarayan RA
3'UTR Mapping Reveals Alternative Polyadenylation in Right Ventricular Failure.; Circulation research. 2026 Feb 25.
1. Bruno BS
2. Platten EM
3. Houston L
4. Brule CE
5. Grayhack EJ
The Tor pathway, ribosome concentration, and wobble decoding mediate inhibitory effects of the Leu-Pro CUC-CCG codon pair in Saccharomyces cerevisiae.; bioRxiv : the preprint server for biology. 2026 Feb 21.
1. Subramaniam J
2. Jonnakuti V
3. Collum SD
4. Martineau S
5. Huang KL
6. Breuils-Bonnet S
7. Frump AL
8. Akkanti BH
9. Patel JA
10. Patel MK
11. Salas de Armas I
12. Lefebvre IN
13. Radovancevic R
14. Blanco E
15. Wagner EJ
16. Gregoric I
17. Nathan S
18. Kar B
19. Provencher S
20. Bonnet S
21. Potus F
22. Yalamanchili HK
23. Karmouty-Quintana H
Alternative Polyadenylation Signatures Distinguish Maladaptive Right Ventricular Remodeling in Pulmonary Hypertension: Implications for RNA-Based Diagnostics and Therapeutics.; British journal of biomedical science; Vol 83, pp. 15687. 2026 Feb 20.
1. Tang WY
2. Dai N
3. Zhou T
4. Mathews DH
5. Huang L
SamplingDesign: RNA design via continuous optimization with coupled variables and Monte-Carlo sampling.; Nature communications. 2026 Feb 20.
1. Rambout X
2. Maquat LE
Keeping cells fit.; Science (New York, N.Y.); Vol 391(6786), pp. 657-658. 2026 Feb 12.
1. Butt JN
2. Scott RL
3. Bryan MR
4. Steiner DJ
5. Bachmann R
6. Santonastaso B
7. Gatchell M
8. Refaai M
9. Miller BL
A multi-readout photonic sensor for rapid diagnosis of Von Willebrand disease.; Npj biosensing; Vol 3(1), pp. 7. 2026 Feb 02.
1. Zhou T
2. Malik A
3. Tang WY
4. Mathews DH
5. Huang L
Theory, Algorithms, and Applications for Identification of Undesignable RNA Secondary Structures and Motifs.; Journal of computational biology : a journal of computational molecular cell biology; Vol 33(1), pp. 134-167. 2026 Jan 30.
1. Choi EK
2. Bose R
3. Mathews DH
4. Mustoe AM
5. Lucks JB
Ubiquitous low-energy RNA fluctuations and energetic coupling measured by chemical probing.; bioRxiv : the preprint server for biology. 2026 Jan 30.
1. Shen Z
2. Siriboe MG
3. Ren X
4. Dayananda T
5. Jenkins JL
6. Khare SD
7. Fasan R
Computational design of generalist cyclopropanases with stereodivergent selectivity.; Nature communications. 2026 Jan 26.
1. Yuan B
2. Das SK
3. Wang W
4. Camacho G
5. Kumar A
6. Hayes JJ
7. Lee TH
Conformations of linker histone H1 bound to nucleosome arrays.; Journal of molecular biology. 2026 Jan 21.
1. Kirchhoff CL
2. Powell HR
3. Galardi JW
4. Loerch S
5. Pulvino MJ
6. Jenkins JL
7. Boutz PL
8. Kielkopf CL
SF3B1 Phosphorylation Prompts U2AF2 Dissociation for Widespread Control of pre-mRNA Splicing.; bioRxiv : the preprint server for biology. 2026 Jan 20.