URochester Medicine / Biochemistry & Biophysics / Research / Recent Publications

Recent Publications

1. Li S
2. Feng S
3. Liu Y
4. Qin C
5. Zhang J
6. Saito T
7. Xie X
8. Fu W
9. Wang R
10. Zheng Y
11. Shu Z
12. Yeh W
13. Sasaki S
14. Tjokro N
15. Chen L
16. Munger J
17. Yuan W
18. Jung J
19. Chen C
20. Feng P
Herpesviruses hijack ISGylation to promote viral capsid assembly.; Science advances; Vol 12(37), pp. eaeg7872. 2026 Sep 11.
1. Li T
2. Lu X
3. Alomeir N
4. Gaca A
5. Sohn M
6. Gill S
7. Smith B
8. Munger J
9. Xiao J
Longitudinal development of infant oral ecosystem: salivary metabolomic, bacteriome, and virome dynamics in early infancy.; mSystems. 2026 Aug 31.
1. Abshire ET
2. Maquat LE
Assembly of exon junction complexes on spliceosomes begins before spliceosome activation.; Nucleic acids research; Vol 54(16). 2026 Aug 24.
1. Yan J
2. Yi T
3. Tian W
4. Wu J
5. Yu R
6. Zhang S
7. Cheng Z
8. Di X
9. Jiang H
10. Wen D
11. Zhang S
RFC5 and STAT3 form a transcriptional complex to drive NSCLC progression via c-Myc.; iScience; Vol 29(9), pp. 117246. 2026 Aug 18.
1. Rugelis NR
2. Kumar A
3. Hayes JJ
Linker Histones: The Multiple Binding Modes of the Enigmatic 5th Histone.; Biomolecules; Vol 16(8). 2026 Aug 13.
1. Grant TD
2. Perera SMDC
3. Salas-Estrada LA
4. Menon CSK
5. Struts AV
6. Xu X
7. Fried SDE
8. Weerasinghe N
9. Chawla U
10. Alvarez R
11. Hu H
12. Karpos K
13. Lisova S
14. Nazari R
15. Zaare S
16. Coe J
17. Fromme R
18. Meza D
19. Singharoy A
20. Chamberlain SR
21. Moore S
22. Zatsepin NA
23. Perakis F
24. Carbajo S
25. Hunter MS
26. Liang M
27. Seaberg MD
28. Boutet S
29. Mendez D
30. Grossfield A
31. Fromme P
32. Kirian RA
33. Brown MF
Ultrafast X-Rays Capture Retinal Traversing Conical Intersection in Rhodopsin.; bioRxiv : the preprint server for biology. 2026 Jul 16.
1. Gigas J
2. Meadow ME
3. Guo J
4. Lan C
5. Hillpot E
6. Martinez JC
7. Tombline G
8. Bellomio P
9. Rivera-Almodóvar V
10. Welle KA
11. Swovick K
12. Hryhorenko JR
13. Ablaeva J
14. Ghaemmaghami S
15. Seluanov A
16. Gorbunova V
Long-lived mammals contain more phosphorylation sites in the SIRT6 C-terminus that enhance PARP1 interaction and resistance to oxidative stress.; GeroScience. 2026 Jul 08.
1. Jain A
2. Mayeen NF
3. Meadow ME
4. Kalandadze N
5. Swovick K
6. Welle KA
7. Hryhorenko JR
8. Ghaemmaghami S
Structural proteomics reveals that misfolded nascent proteins expose buried lysines for ubiquitination and rapid proteasomal degradation.; Cell reports; Vol 45(7), pp. 117620. 2026 Jul 03.
1. Zhou T
2. Mathews DH
3. Huang L
Probabilistic RNA designability via interpretable ensemble approximation and dynamic decomposition.; Bioinformatics (Oxford, England); Vol 42(Supplement_1). 2026 Jul 01.
1. Ossevoort T
2. Chernaya O
3. Browning A
4. Mathews DH
5. Ermolenko DN
40S ribosomal subunits move along the 5' UTR through an eIF4A-independent mechanism in higher eukaryotes.; bioRxiv : the preprint server for biology. 2026 Jun 24.
1. Bruno BS
2. Platten EM
3. Houston L
4. Brule CE
5. Grayhack EJ
The Tor pathway, ribosome concentration, and wobble decoding mediate inhibitory effects of the Leu-Pro CUC-CCG codon pair in Saccharomyces cerevisiae.; RNA (New York, N.Y.). 2026 Jun 16.
1. Das A
2. Grove AK
3. Ivanov AV
4. Wakabayashi H
5. Ermolenko DN
Observing intersubunit dynamics in single yeast ribosomes.; Nucleic acids research; Vol 54(11). 2026 Jun 08.
1. Casadio R
2. Lu ZJ
3. Mathews DH
4. Sternberg MJE
Computational Resources for Molecular Biology 2026.; Journal of molecular biology. 2026 Jun 08.
1. Price JDW
2. Vizeacoumar FS
3. Abuhussein O
4. Maranda V
5. Zhang Y
6. Adachi H
7. Nguyen K
8. Kyrylenko L
9. Rangel-Pozzo A
10. Dong H
11. Gong L
12. Materi A
13. Walke P
14. Ganapathysamy A
15. Denomy C
16. Freywald T
17. Dahiya R
18. Elhasasna H
19. Saxena A
20. Vizeacoumar JP
21. Patel H
22. Rajamanickam K
23. de Oliveira DM
24. Lazell-Wright M
25. Morales AM
26. Aggarwal A
27. Xu JL
28. Alli N
29. Munhoz EP
30. Gao P
31. Salsman J
32. Dahiya DK
33. Kola NS
34. Gonzalez-Lopez C
35. Thibault P
36. Levin M
37. Dellaire G
38. Jette N
39. Groot G
40. Köbel M
41. Lee CH
42. Hopkins L
43. Krishnan A
44. Ahmed S
45. Eskiw C
46. Barakat KH
47. Thakur A
48. Wu Y
49. DePinho RA
50. Mai S
51. Yu YT
52. Wong JMY
53. Freywald A
54. Vizeacoumar FJ
Epigenetic control of telomeric RNA maintains heterochromatin in telomerase-driven cancers.; Signal transduction and targeted therapy; Vol 11(1). 2026 Jun 04.
1. Boopathi R
2. Garcia-Saez I
3. Turunç S
4. Lone IN
5. Kumar A
6. Abu Alhaija AA
7. Hayes JJ
8. Bednar J
9. Diril MK
10. Iliev D
11. Gospodinov A
12. Le Roy A
13. Skoufias D
14. Angelov D
15. Hamiche A
16. Kale S
17. Dimitrov S
18. Petosa C
A Rahman Syndrome mutation in histone H1.4 disrupts chromatin compaction and phase separation.; Nature communications. 2026 May 22.
1. Puthenpeedikakkal AMK
2. Cavender CE
3. Smith LG
4. Grossfield A
5. Mathews DH
Reparameterization of the Amber RNA Force Field Non-Bonded Terms.; bioRxiv : the preprint server for biology. 2026 May 19.
1. Shabangu TS
2. Kierzek E
3. Arteaga S
4. Orf GS
5. Stone J
6. Hiltke OM
7. Miaro M
8. Jolley EA
9. Soszyńska-Jóźwiak M
10. Szabat M
11. Aviran S
12. Bevilacqua PC
13. Znosko BM
14. Kierzek R
15. Mathews DH
Nearest Neighbor Parameters for Estimating the Folding Stability of RNA Including Pseudouridine.; bioRxiv : the preprint server for biology. 2026 May 17.
1. Klose AM
2. Beck CA
3. Kates SL
4. Muthukrishnan G
5. Schwarz EM
6. Miller BL
Dual-Scale StaphAIR: Predictive Modeling for the Diagnosis of S. aureus Infection via Simultaneous Detection and Quantification of Cytokines and Antibodies.; Analytical chemistry. 2026 May 16.
1. Simpson LA
2. Dunn DM
3. Fales W
4. Moore ZJ
5. Ciesla JH
6. Waild NC
7. Raymonda MH
8. Harris IS
9. Munger J
HCMV infection depends on EGLN1-mediated mitochondrial activation to increase dNTP pools for viral DNA replication.; Cell reports; Vol 45(5), pp. 117329. 2026 Apr 29.
1. Ebrahim SAM
2. Talross GJS
3. Dweck HKM
4. Shepard JJ
5. Carlson JR
A phytoscreen identifies a garlic compound as a deterrent of mating and egg laying in Drosophila and mosquitoes.; Cell. 2026 Apr 17.