
Welcome to the Uddin Lab
Our research lies at the dynamic intersection of MRI physics, neuroscience, and artificial intelligence
We aim to transform MRI technology and methodologies to improve the diagnosis, monitoring, and treatment of a wide range of medical conditions. By pushing the boundaries of medical imaging, we seek to provide deeper insights into the anatomy and physiology of the brain.
MRI Methods Development
- Development of advanced pulse sequences and image-processing pipelines for high-precision brain imaging
- Fast CEST MRI using compressed sensing and AI to map metabolic dysfunction and neuroinflammation
- AI-driven tools for automated segmentation, classification, and feature extraction of brain arteries from time-of-flight MR angiography
- Robust estimation of extracellular free water and neurite density from single-shell diffusion MRI
Clinical and Translational MRI Applications
- Probing neuroinflammation and neurodegeneration using diffusion MRI, T2-based myelin water imaging, and other quantitative techniques
- Investigating iron-sensitive biomarkers through quantitative susceptibility mapping and relaxometry in neurodegenerative disorders
- Studying non-alcoholic fatty liver disease (NAFLD) using MR elastography and proton density fat fraction (PDFF), and assessing its influence on brain metabolism
- Integrating multimodal MRI with blood biomarkers and cognitive assessments across healthy aging and neurological conditions

Md Nasir Uddin, Ph.D.
Principal Investigator
Projects
- Advanced CEST MRI Reconstruction and Quantification for Brain Metabolism and Neuroinflammation
- Automated Brain Artery Segmentation Analysis from Time-of-Flight MRA
- Estimating Free Water and Neurite Density from Single-Shell Diffusion MRI
- Multimodal MRI Integration for Predicting Brain Disease Progression
- Advanced MRI in the Co-occurrence of Liver Disease and HIV Infection
Publications
View All Publications- Chemical Exchange Saturation Transfer Imaging in Neuroinflammation: Methods, Challenges, and Recommendations.; International journal of molecular sciences; Vol 26(22). 2025 Nov 15.
- ArteryX: Advancing Brain Artery Feature Extraction with Vessel-Fused Networks and a Robust Validation Framework; arXiv preprint arXiv:2507.07920. 2025 Jan 01.
- Impact of fatigue in Crohn's disease is negatively related to resting state functional connectivity between the superior parietal lobule and parahippocampal gyrus/hippocampus.; Frontiers in human neuroscience; Vol 19, pp. 1561421. 2025 Apr 25.
- A multisite validation of brain white matter pathways of resilience to chronic back pain.; eLife; Vol 13. 2024 Dec 24.
- Tensor-valued diffusion MRI detects brain microstructural abnormalities in HIV infected individuals with cognitive impairment.; Scientific reports; Vol 14(1), pp. 28839. 2024 Nov 21.