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Kielkopf Lab

URMC / Labs / Kielkopf Lab / Projects

 

Research Projects

Human life depends on pre-mRNA splicing for cellular viability, differentiation and responses to changing physiology or environment. A major focus of my laboratory is to understand at a molecular level how the splicing machinery identifies sites for excision from gene transcript RNAs, which in turn changes the proteins produced. We have characterized the three-dimensional shapes of human splicing proteins recognizing one another and the gene transcript RNA at high resolution by X-ray crystallography complemented by molecular biology in human cells. Through this research, we identify a network of interactions responsible for recognizing human splice sites. The broader impact of this work for human disease is emphasized by the severe defects in pre-mRNA splicing that accompany most human hematologic malignancies and many metabolic disorders, as well as the dependence of HIV-1 and other complex retroviruses on RNA splicing for infectivity. Specific projects include:

Molecular Recognition During pre-mRNA Splicing

C3The overall goal of this research is to understand how essential ternary complexes of SF1, U2AF65, and U2AF35 splicing factors recognizes 3´ splice sites and initiates the process of spliceosome assembly.

Learn more about Molecular Recognition During pre-mRNA Splicing

Molecular Actions of Prevalent U2AF1 Mutations in Myelodysplastic Syndromes

4YH8 thumbSpecific mutations in the U2AF1 proto-oncogene, which encodes the U2AF35 protein, are prevalent among patients with hematological malignancies, including 10-12% of patients with myelodysplastic syndrome (MDS) without ring sideroblasts and 8-11% of patients with chronic myelomonocytic leukemia (CMML).

Learn more about Molecular Actions of Prevalent U2AF1 Mutations in Myelodysplastic Syndromes

Structural Control of Human Co-factors for Retroviral Gene Expression

tatSF1Viruses such as HIV-1 use the human machinery to produce its RNA transcripts for protein expression and ultimately genomic replication. How viruses hijack cellular processes through interactions with host macromolecules is a fundamental question in biology and medicine.

Learn more about Structural Control of Human Co-factors for Retroviral Gene Expression