SARS-CoV-2 (COVID-19) Surveillance

Purpose

The University of Rochester Medical Center, part of the CDC's New York State Emerging Infections Program (EIP), was awarded a $1.7 million grant to extend EIP surveillance to COVID-19 and conduct several additional related studies. The surveillance team, based out of the Center for Community Health & Prevention, collects extensive data on all COVID-19 hospitalized cases to better understand risk factors, underlying conditions, clinical course and treatment.

The collected data is reported weekly on COVID-NET, a laboratory- and population-based surveillance system, initiated and funded by the CDC. 

Reports

Find more recent reports from Monroe County here.

March 7 - November 18, Weekly Cumulative Data and Graph

March 7 - October 21, Weekly Cumulative Data and Graph

March 7 - October 7, Weekly Cumulative Data and Graph

March 7 - September 23, Weekly Cumulative Data and Graph

March 7 - September 9, Weekly Cumulative Data and Graph

March 7 - August 26, Weekly Cumulative Data and Graph

March 7 - August 12, Weekly Cumulative Data and Graph

Find earlier reports here.

COVID-19 among Healthcare Personnel

The EIP team is working with the CDC on gathering information from healthcare personnel who have been tested for COVID-19 to evaluate how well COVID-19 vaccines prevent laboratory-confirmed, symptomatic COVID-19 in healthcare workers in the “real world,” outside of a clinical trial. Learn more.

• Pilishvili T; Gierke R; Fleming-Dutra KE; Farrar JL; Mohr NM; Talan DA; Krishnadasan A; Harland KK; Smithline HA; Hou PC; Lee LC; Lim SC; Moran GJ; Krebs E; Steele MT; Beiser DG; Faine B; Haran JP; Nandi U; Schrading WA; Chinnock B; Henning DJ; Lovecchio F; Lee J; Barter D; Brackney M; Fridkin SK; Marceaux-Galli K; Lim S; Phipps EC; Dumyati G; Myer C; et al; "Effectiveness of mRNA Covid-19 Vaccine among U.S. Health Care Personnel." The New England Journal of Medicine. 2021; Epub 2021 Sep 22.

• Chea N; Eure T; Penna AR; Brown CJ; Nadle J; Godine D; Frank L; Czaja CA; Johnston H; Barter D; Miller BF; Angell K; Marshall K; Meek J; Brackney M; Carswell S; Thomas S; Wilson LE; Perlmutter R; Marceaux-Galli K; Fell A; Lim S; Lynfield R; Davis SS; Phipps EC; Sievers M; Dumyati G; Concannon C; McCullough K; Woods A; Seshadri S; Myers C; et al. "Practices and Activities Among Healthcare Personnel with SARS-CoV-2 Infection Working in Different Healthcare Settings-10 Emerging Infections Program Sites, April-November 2020." Infection control and hospital epidemiology. 2021; Epub 2021 Jun 02.

• Pilishvili T, Fleming-Dutra KE, Farrar JL, ..., Dumyati G., Vaccine Effectiveness Among Healthcare Personnel Study Team. Interim Estimates of Vaccine Effectiveness of Pfizer-BioNTech and Moderna COVID-19 Vaccines Among Health Care Personnel — 33 U.S. Sites, January–March 2021. MMWR Morb Mortal Wkly Rep. ePub: 14 May 2021. DOI: http://dx.doi.org/10.15585/mmwr.mm7020e2
   
• Seshadri S, Concannon C, Woods JA, McCullough K and Dumyati G. "It's like Fighting a War with Rocks:" Nursing Home Healthcare Workers' Experiences During COVID-19." Infection Control & Hospital Epidemiol. August 2020, pp 1-7.doi:10.1017/ice.2020.393. [Epub ahead of print]

Publications

• Wortham JM, Meador SA, Hadler JL, Yousey-Hindes K, See I, Whitaker M, O'Halloran A, Milucky J, Chai SJ, Reingold A, Alden NB, Kawasaki B, Anderson EJ, Openo KP, Weigel A, Monroe ML, Ryan PA, Kim S, Reeg L, Lynfield R, McMahon M, Sosin DM, Eisenberg N, Rowe A, Barney G, Bennett NM, Bushey S, ... COVID-NET Surveillance Team. Census tract socioeconomic indicators and COVID-19-associated hospitalization rates-COVID-NET surveillance areas in 14 states, March 1-April 30, 2020. PLoS One. 2021 Sep 24;16(9):e0257622. doi: 10.1371/journal.pone.0257622. PMID: 34559838; PMCID: PMC8462704.

• Delahoy MJ, Ujamaa D, Whitaker M, O'Halloran A, Anglin O, Burns E, Cummings C, Holstein R, Kambhampati AK, Milucky J, Patel K, Pham H, Taylor CA, Chai SJ, Reingold A, Alden NB, Kawasaki B, Meek J, Yousey-Hindes K, Anderson EJ, Openo KP, Teno K, Weigel A, Kim S, Leegwater L, Bye E, Como-Sabetti K, Ropp S, Rudin D, Muse A, Spina N, Bennett NM, Popham K, ..., COVID-NET Surveillance Team; Hospitalizations Associated with COVID-19 Among Children and Adolescents - COVID-NET, 14 States, March 1, 2020-August 14, 2021. MMWR Morb Mortal Wkly Rep. 2021 Sep 10;70(36):1255-1260. doi: 10.15585/mmwr.mm7036e2. PMID: 34499627.

• Moline HL, Whitaker M, Deng L, Bennett NM, Bushney S, ..., COVID-NET Surveillance Team. Effectiveness of COVID-19 Vaccines in Preventing Hospitalization Among Adults Aged ≥65 Years — COVID-NET, 13 States, February–April 2021. MMWR Morb Mortal Wkly Rep 2021;70:1088-1093. DOI: http://dx.doi.org/10.15585/mmwr.mm7032e3external icon.

• Garg S, Patel K, Pham H, Whitaker M, O'Halloran A, Milucky J, Anglin O, Kirley PD, Reingold A, Kawasaki B, Herlihy R, Yousey-Hindes K, Maslar A, Anderson EJ, Openo KP, Weigel A, Teno K, Ryan PA, Monroe ML, Reeg L, Kim S, Como-Sabetti K, Bye E, Shrum Davis S, Eisenberg N, Muse A, Barney G, Bennett NM, Felsen CB, Billing L, Shiltz J, Sutton M, Abdullah N, Talbot HK, Schaffner W, Hill M, Chatelain R, Wortham J, Taylor C, Hall A, Fry AM, Kim L, Havers FP. Clinical Trends Among U.S. Adults Hospitalized With COVID-19, March to December 2020 : A Cross-Sectional Study. Ann Intern Med. 2021 Aug 10. doi: 10.7326/M21-1991. Epub ahead of print. PMID: 34370517.

• Havers FP, Whitaker M, Self JL,..., Bennett NM, Gaitán M,...; COVID-NET Surveillance Team. Hospitalization of Adolescents Aged 12-17 Years with Laboratory-Confirmed COVID-19 - COVID-NET, 14 States, March 1, 2020-April 24, 2021. MMWR Morb Mortal Wkly Rep. 2021 Jun 11;70(23):851-857. doi: 10.15585/mmwr.mm7023e1.

• Owusu D, Kim L, O'Halloran A, Whitaker M, Piasecki AM, Reingold A, Alden NB, Maslar A, Anderson EJ, Ryan PA, Kim S, Como-Sabetti K, Hancock EB, Muse A, Bennett NM, Billing LM, Sutton M, Talbot K, Ortega J, Brammer L, Fry AM, Hall AJ, Garg S; COVID-NET Surveillance Team. Characteristics of Adults aged 18-49 Years without Underlying Conditions Hospitalized with Laboratory-Confirmed COVID-19 in the United States, COVID-NET - March-August 2020. Clin Infect Dis. 2020 Dec 3:ciaa1806. doi: 10.1093/cid/ciaa1806. Epub ahead of print. PMID: 33270136.

• Acosta AM, Mathis AL, Budnitz DS, Geller AI, Chai SJ, Alden NB, Meek J, Anderson EJ, Ryan P, Kim S, Como-Sabetti K, Torres S, Dufort E, Bennett NM, Billing LM, Sutton M, Keipp Talbot H, George A, Pham H, Hall AJ, Fry A, Garg S, Kim L. COVID-19 Investigational Treatments in Use Among Hospitalized Patients Identified Through the US Coronavirus Disease 2019-Associated Hospitalization Surveillance Network, March 1-June 30, 2020. Open Forum Infect Dis. 2020 Nov 9;7(11):ofaa528. doi: 10.1093/ofid/ofaa528. PMID: 33274249; PMCID: PMC7686662.

• Kambhampati AK, O'Halloran, AC, Whitaker M, Felsen CB, Bennett NB, et al. COVID-19-Associated Hospitlizations Among Health Care Personnel -- COVID-NET, 13 States, March 1-May 31, 2020. MMWR Morb Mortal Wkly Rep. 2020;69(43):1576-1583. doiI: 10.15585/mmwr.mm6943e3external icon

• Delahoy MJ, Whitaker M, O'Halloran A, Chai SJ, Kirley PD, Alden N, Kawasaki B, Meek J, Yousey-Hindes K, Anderson EJ, Openo KP, Monroe ML, Ryan PA, Fox K, Kim S, Lynfield R, Siebman S, Davis SS, Sosin DM, Barney G, Muse A, Bennett NM, Felsen CB, Billing LM, Shiltz J, Sutton M, West N, Schaffner W, Talbot HK, George A, Spencer M, Ellington S, Galang RR, Gilboa SM, Tong VT, Piasecki A, Brammer L, Fry AM, Hall AJ, Wortham JM, Kim L, Garg S; COVID-NET Surveillance Team. Characteristics and Maternal and Birth Outcomes of Hospitalized Pregnant Women with Laboratory-Confirmed COVID-19 - COVID-NET, 13 States, March 1-August 22, 2020. MMWR Morb Mortal Wkly Rep. 2020 Sep 25;69(38):1347-1354. doi: 10.15585/mmwr.mm6938e1

• Ko JY, Danielson ML, Town M, Derado G, Greenlund KJ, Daily Kirley P, Alden NB, Yousey-Hindes K, Anderson EJ, Ryan PA, Kim S, Lynfield R, Torres SM, Barney GR, Bennett NM, Sutton M, Talbot HK, Hill M, Hall AJ, Fry AM, Garg S, Kim L; COVID-NET Surveillance Team. Risk Factors for COVID-19-associated hospitalization: COVID-19-Associated Hospitalization Surveillance Network and Behavioral Risk Factor Surveillance System. Clin Infect Dis. 2020 Sep 18:ciaa1419. doi: 10.1093/cid/ciaa1419. Epub ahead of print.

• Kim L, Whitaker M, O'Halloran A, Kambhampati A, Chai SJ, Reingold A, Armistead I, Kawasaki B, Meek J, Yousey-Hindes K, Anderson EJ, Openo KP, Weigel A, Ryan P, Monroe ML, Fox K, Kim S, Lynfield R, Bye E, Davis SS, Smelser C, Barney G, Spina NL, Bennett NM, et al. Hospitalization Rates and Characteristics of Children Aged <18 Years Hospitalized with Laboratory-Confirmed COVID-19 - COVID-NET, 14 States, March 1 - July 25, 2020. MMWR Morb Mortal Wkly Rep. 2020 Aug 7; 69.

• Kim L, Garg S, O'Halloran A, Whitaker M, Pham H, Anderson EJ, Armistead I, Bennett NM, Billing L, Como-Sabetti K, et al. Risk Factors for Intensive Care Unit Admission and In-hospital Mortality among Hospitalized Adults Identified through the U.S. Coronavirus Disease 2019 (COVID-19)-Associated Hospitalization Surveillance Network (COVID-NET). Clin. Infect Dis. 2020 Jul 16. doi:10.1093/cid/ciaa1012. [Epub ahead of print]
• Garg S, Kim L, Whitaker M, O’Halloran A, Cummings C, Holstein R, Prill M, Chai SJ, Kirley PD, Alden NB, Kawasaki B, Yousey-Hindes K, Niccolai L, Anderson EJ, Openo KP, Weigel A, Monroe ML, Ryan P, Hendeson J, Kim S, Como-Sabetti K, Lynfield R, Sosin D, Torres S, Muse A, Bennett NM, et al. Hospitalization Rates and Characteristics of Patients Hospitalized with Laboratory-Confirmed Coronavirus Disease 2019 — COVID-NET, 14 States, March 1–30, 2020. MMWR Morb Mortal Wkly Rep. ePub: 8 April 2020. DOI:10.15585/mmwr.mm6915e3